Contig Data
morexGenes
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Map Locations of contig_2547806 (2829 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location No map location




Predicted Genes from contig_2547806

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_37124 3 1871 bp MLOC_37124.3 Available Available LOC_Os07g09510.1, FRAME:-2, EVALUE:3e-34, 13107.m00958 protein retrotransposon protein, putative, unclassified, expressed





CDS Structure of MLOC_37124






Contig Sequence (2829 bp)

>contig_2547806 2829 assembly3_WGSMorex_rbca.fasta
CTCTAGCCTACCCCAACTTGTTTGAGGCTAAAGGCTTTGTTGTTGCATCAGGTCATCTTT
GGTATATGTGTTTCCTTCGAATGTTATACTCAAGCCTTAGTTCATATCACCATTGTACAC
GGTTTTAATACTCTATTGTTGTATTTGAAAAAAAAATTGGAAAATAAGGAAGCGATGGCA
TTGATGCAGCAAGTTAATAGCCAGAGTAAAGAACACATACCATAGCTGTTAGTTCAGGAG
TATGTTGTGCTAATGGCCTCTTTACAACTGTTGAAGCAGCAGATTTGACGTAAGATGGCT
GCTGAGGTAACTGCGGCCTTGGGCCAAAAGCAGCAAATTCGGGTCCTGGAAAAAATGGAG
GCCTAAGCATTGTTGGTGGACCAGGAAGCACACCAAAGGGTGCCATTGGCATTTGAGCTG
GAGGTAATGCTGGAGGAGGTGGAGGGGGGCAGGCTGCAACACCAGTAACCATAAATGATG
GCCTTGAATCTGGTGGTGAAGGTGGTGGAGGAAATCTGACCATTCCTGGACTTAGAATAT
CAGGCTGTACTGGAGGCATCATTGGAGGCCTTGGAGGCAAAGGCAGTAACTGTGACGGAT
GCGGTGGAGGTGGTGGTAAGAACCTTGAAATTTTGGCATCTTCTTTCACAACAGGAGTAT
CCATAGCAGCATTGTCAGTATCCTGCATTTCATTTGAGTTCGGTGGCAACCTAGGGGGAG
GTGGAGGTGGAGGTAGAACAACTGGGGCCTGCAAAATGAAATTCAAAGTTGTAACAGGAA
CTAGCAGACAAACAATAAACCAAACGAGGAGCAACTTGGCAACTGAAATATTAATAAGGA
TTTTCAGGGAATGCATAAATAGTAACCCAAAGAACTAGCCATGGACAGGGCTGCATGGAA
GCTTTCTATCCATGTGCCAAAACTATGAGTTGGTCGCAAGATCTGATGGGTTTCACCTCT
AGCCTACCCCAACTTGTTTGGGACTAAAGGCTTTGGTGTTGCTGTTGTTGCATAAACACT
TCGGGACTAAAGGCTTTGTTGTTGTTGTCGAATAAATTTGTACTAACTTAGTACTCCTCC
GTCCCAAAATAAGTGACTCAAAAATGACTATCTTATTTTGGGACCGAGGGAGTACTAAAT
TTGCGTCACTTATTTTGGGACACAGGGAGTAGCAACATACTGGAACAGTCAGAAATATTT
CAAATAAAATTTAAGTAGCACCTGTGTAGAATCTGCCGAGCTTGCACCCTCTCCAACAGC
TTGTTTATTATTAAGCACATTTATACCAGGTAGAGGTGGTGGTTGCAAAGGCCGCTGTGG
TGGAGGTGGAGGTGGTGGCAGTAATGTATGATCTAGCACAGGTTCTCTGGGAGGTGCACC
AGGAGGAGGAGGTGGAGGTGGCAGCGGCAAGCCTGGTGCTATTGCAGAGCCAGCAGGCTT
AGGTGGGGGTGGGGGTGGTGGTGGGGGTAAAGGTAAAGAAGGGGCAGATAAATCTGAAGG
TTCTGAAGAGGCTGGCAGTGGAGGGGGCGGTGGAGGAGGGGGCATGGTGGAAGGACCTGC
TTCTTCAGATTCTGTTATGGAAGATGGAGCCCCAACACCAGCTGTAGAAGGCAGTGGAAT
CCTTGGTCCTATTGTCAATCAAGAAACAAAAGTGAGCAAAAACATTTCAGCGAACTGTAA
AAAATATTAAGAAAATATCCTACAAGTTATGCTGACCTATCGATGATTTGTACATAGGAG
GTTTGCCAGGTGGTGGTGCCCCAGATGGATTCAAGGTTGGGTGATAGTAAACAGAATCCT
GCAGTGCAAACCTAGTTAGTATCTATTCTGAACATGCTGTAACATATATCAACGCTCTCT
GAACTGTAAATACCATACCTCAGGCATAGGGTTTTTAGCTCTATCGTCTTCGTCTGCTGC
AGGCCGTCTCTTTGGTGGTCCAAGATGGCTGGTTGGAAATGAAATACAAATTTAATAAAC
AAAAACAACTGCATGAAAATTTAATGAATATGTATAACAAATAAAATCTCACCTGAACAT
AACTGGTTGCTCACCCTTTACTTTCATCTTTTCTTCATATTCCTGGCCAAGATATGAAAA
GGCAACGAGGTACCATGTACCCAAAAAAACTAATTATAGCATGTCCCGTCAAGAAGTTGT
ACAGAGATTAGAAGATTAATTCAAAGATCCAAATAGGTTTACCAAGTACCAACACATCAA
AAATCACTAGTACTGTGCCATAATGTGAGGGGTATATAACTCATGAATAAGATAATAACA
GTCCTCAGTTAGATTGCATAACAGAGTCGATACAGATGATTCTATAAAACGAATGATCCC
TTTTAGTTGTAACTTTCTGCTTGTTACCAAAACCAAATGTTTCTTGTGAACACATCAGAA
TACGCTATCATAATTCACTAACAGCATGAGACATTCAACAGAAATCCTCCAAATATCATG
TTCCTGAATCTTGAAGAAATCGTAACAAGTTTTTTTTTCTTTCTTCTTAAGCTGCCATTG
GAATTTCCTCTTAAAAAAAAGAGTTCCAGATAAACTTAAAAGAAAATACTAGCAAAAGAT
TGTACAAAAGAAAGAAAAATATGCAACCATAAATAGCAAACAAAACCTAGGGCCAGTTCT
TCTGACTCAATTCTGAAGAATTACTGCCCGGAAAATTACAATCGCAAAAGAACTCGTTTC
TTCCGAGGAATTATCTGAGAATTACCAGAATTACTAGTGCATTTCAGAATTGTGAGAACC
TGGCAATTCTGGCAATTCTAGCCAGCCCCTCAAAAGAAAACCTTTCGTTTTGAACTGCTA
CCCCTATTG