morexGenes - Barley RNA-seq Database

Contig contig_2547805
Source Contig contig_2547805
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_2547805 (10699 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_2547805

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_37121	1	808 bp	AK251386.1	Not available	Available	None
MLOC_37123	4	2020 bp	MLOC_37123.2	Available	Available	LOC_Os10g42750.1, FRAME:-1, EVALUE:0.0, 13110.m04029 protein CSLD1 - cellulose synthase-like family D, expressed
MLOC_37122	12	3839 bp	MLOC_37122.1	Available	Available	LOC_Os10g42760.1, FRAME:+1, EVALUE:0.0, 13110.m04031 protein PPR repeat domain containing protein, putative, expressed
CDS Structure of MLOC_37121

CDS Structure of MLOC_37123

CDS Structure of MLOC_37122

Contig Sequence (10699 bp)

>contig_2547805 10699 assembly3_WGSMorex_rbca.fasta
TTTAGGAACGGAGGGAGTATGATACAAAAAGTCAAAAAGTATATTGTTGGATTTGTATTT
GAGAGAGGTTTCCCGTAATATTTTTTCTACGACATGTAGTTTACATTTTATTATGAAGTA
CTCCTTCCGTTCCTAAATATATGTCTTTTTAGAGATTCCACTAGGGACTACATACAAAGC
AAAATGAGTGAATATACACTCTAAAGTATGTCTATATACATCCCTACTATGCAGTCTGTA
GTGGAAACTCTAAAAACACTTATATTTAGGATTGAAGGGAGTAGTTAAAATTTTTGGTCA
AACTTTAGCCCAAATCAAGAGGGGCGGCCTAATAAACCCGGACGGAGGTAGTGCTTCGCA
TCTGTTTCAGTTTCCTTCCAGATTTTGTGCATCAGTTCAAGTAGTAGTAATGCTGTCTCT
GAATGTTCTTGGGAGCCAAAATTGTGCTTCCTCTCTAGTTGAAGCGGCAGTGGAGTCCCT
GAATTGCATATCTGTTTGAGACACTCAGATATTTCTCGTCCATTGCAGGTTCATCTCATA
GAAGGAATCATCGATGAAGTCGACAGCACGGTTCACGTCTCGTGGGTCCAGCCCAGAGTA
CTCGGCATCCCACAGGTGAAGGCGTTGCGTGAGCGGCTGGACTCGTGGGTCGGCAAAGTG
CATAGCACGCTGTTGTCCATCGAGGCAGAGACCCCTGATCTCGTGGCGGCTTAGCTTCTT
CTTGGCCAGAAATGCTTCTGAATAGGCAGGCTTTGGTTCTCAGCAGGCGGCGGTGTAAAA
CGAGAGACCATCTGGCTGTGCTGCGCGTGCTAGCTGCTCTTTTCTGGATAACGAAAACCT
TGTTGCCTTGGGTGTCCTATTGATCTGGACTTGTAACTTGCTTCTGTCATCACGGATTGA
AACAGAGAAATCATACCGGCAGAGGGCGTCACTAGTTTTTTCCCAGTTGAACTTTATAAT
CTGTAATCCAGCGGTTTGCCAGTTTTTCTTTCTCTTCCATTGTGCTATGGACATGGACAC
GCAGGAAAATCTTGCTCATTTTCTTAAGTTTGTTCCAGACAGCGAGTCCTGTGAATTCTT
GCATGCTCTGTCTGCCTACGTTTCAAACCATACCACACGTATTGTTAAGCGTCCATCAAT
TTCGCTCGCGTGATAAACCCCAAAGTACTCCAGTACAAAGTTGTAAAACAGCGACAATTA
ATTTGGATTGGAGTATCAAACTCTATTTGGTAAAACTTTGACATAAATCAATACAGTATC
ATAGTTTCTGCAAGCTATGTTAGTTTGTAAAAAACGTCTTACATTATGGAACGAAAAGTA
TAGAGTATTACATATTTTTGACAGATTTAATGCATCAAATATCATGTGAAATGATCCATC
TACTCCCAGTACCCGAATTTGGGAGGTTTGCCGTTTCAGCGTCCTCCCTCCCCACGTTAC
GCAGCGCCGCCGCCGCCGTGCCCGTGCCCGTGCCGGCGGTGTTTGCTTGCTCTGCTCTCC
ATGCAACCAGGCAGAAATCACTGAGCTCCTCCCCCGCCCGTGTTCGCGCCTGCAATGCCA
GCCTCGCCGTCCCCGCCCACTCGCTGCTTCTATGCTCCACGCCGCACGGAGGCGGACACC
GCCGCTCCCTGCCAGGCTCGCCGCCGCCTACTTCGCCGCCAAGCCCCAGCAGCCCGCCCT
GTCGCCTCAGGTCGTCGAGGCCGCCATCACCCGCTGTCCCTCCGACGCCCTCGCGCTCTC
CTTCTTCCTCTGGTGCGCCCGCCGCCCCGCCTACTTCCACCCGCCCTCGTCCTTCGACCG
CGTCCTCCCCGCCGCCACGCGCCTCGCCTCCCGCCTCGGCACCGCCCCCGCGCTCCTCTG
CGACCTCCAGAGCCTCGGCTGCCCCATCAGGCCACACACCTTCCTGCTCCTGCTCAGGCT
CTACTGGCGCGGGGGCCTGTACCCGCTCGTGCTCCACCTGTTCGACCAAATGCCCCGCTG
GGGCTTCCACCACAACGCCTTCGCGCGCAATGTCGTCCTCGACGTCCTGCTCAGGACCGG
CTGCGTCGACGACGCGCTGCGCTTCGTGCAGGGCGACCCGTCGCCCAACTACCTCACCTA
TGCCATTGTCCTGACTCATCTCTCCAGGGCTGGGGATTGGTCGCGGTTGCGCGTCTGTTT
CGCAGCTATGCTGAGCCAAGGTTTTCTCCCCAGCGCCACTTCGTTCACCTCGGTGTTTGC
CTGTTGCAGTAAGGCCGGCACCATGGCCGAGCTACTGCAGTTGCTGTCGTATGCGCTTGT
CTCGGGCCAGCAGCTCACTTCGGCCATGTGGACGTGTCTCATCGCTCGTATGTGCAGCGA
GGGAAGGCTAGACGAGGCCTGTCAAACCCTGGGAAATATGGTACGTTCTGGCTCTTCTCC
CACGGTGGTGACTTACACACCGCTTGTCAGAGGTCTCTTCCGAGCTGGGAGGCATGACAT
CGCCAGTGAGCTCTTGGGATCCATGGCATCCAACGGTTGCACCCCAGACCTTGTTATGTA
TAATGTTCTGATGGACTGCATGATGAGGGAGAGGAGGTACGATGAGGCAATAGACATCTA
CCTGCATCTTCATGGGAGCCAGATAAAGCCGGATGCATACACTTTGTCTACTTTGGTTCA
GGTATTGCAGTTGTCACGGAACATAGATCTTCTCCCTAGGTTAATCCTGGGCTTGGATAT
CTCTTATGATCTTGTGGCTTGCAATTCGATGCTGAGTGCTCTGTGCAAGTCCGGGTTTCC
ATCCGAAGCCCTTCAGTTCTACATCGATATGATTGGTTTGGGCATCAGGCCGGACAGCTA
CAGTTATGTTGGATTGTTGGATAGTTTGTGTCACTTGGGAAGGATAGATCATGCAGTCAA
CCTCTACCGGAGTGTTGTCACAAGCAATCCTGATTCAGACGCCTATGTCCATGCAGCCAT
CCTCCGTGGCCTTGTTAGAAGGGGCCAGAACATAATGGCATTTAGGATTCTCAGGGAGGC
TGTGCGTCAAAATTATGCACTTGATGCCGTGTGCTACACCATTGTTCTGCATGGTCTATT
CCAAGGTCATTTTGTTCAAGAGGCTCGTGATTTGTTTGACAAGATGAAGGATTCAGGAGT
TGCTTCCAACACTTGTACATACAATGTAATGCTTCGTGGACTGTGTAGAGCCAGGGATAT
GCTTGCAGTCACGCAGTTACTAACAGAAATGGAAGGCGCCAATGTTCAGATGGATAGTAT
CTCATTCAACGTGGTAGTTGTGCTCTTGGTGAAATTGCAGCGCATCAGTTCGGCCACAGC
TTTGATCAGGGAAATGCTCAATCTAGGCATGAAACTGAGCACCAAAACTTGCTGGTTACT
TTCTCAATCAATTGGTCATAGATTCGTTTTGGAGGATTCTATCAGTGCTGAAAGTGATGG
GTCTGACTCAACATGCGATCTGCTTGTATGCTCAGCTTCATAGTCTACTTTTAGACGGAA
CAAGCATGCTGTTTCTGGTATCTCCACTTTGTGATGTAATTGATACAAAATATAAATTAC
TAAAGGCTGGAGAAATTCTAAATGCATTTCTACCACGCAGAGATCCTCGCTATAACATTT
TCCCCTTGAAGCCCCCAGCAAAAATTACCATAATTATTGAAGAGATGTTTACCTCGTAGG
TACATACCTTTTGAATATCATTCCAACATTATGTTGATAAATTTTAAAATGTATCTGTAA
CTTTGGGTTCTACTCAGGTGCAGGTTGGTGAGACATGTGCAGTTTGATCTAACACCGAGA
ATGAGGCAGTTTGTTCTTGACAATATTGGATCTTTCCATGACACAATGCTGATGTACTCT
GGCTTACACCTAAATGATTTAGCAATGCCGCCCATGGACTAGATTTGAAAGAAATTGCAG
GTATACTTTAGTTGTTTCTCTACAGCAATTTTCAAATTGTACCCTTATGCATTCTCTTCA
GAATATAGTTTAACAGTGTATCATCGTTACATAAGTTCAAACTATGCAACTATGATTTTT
TTGAACTATTTACAATTCAGGAATTTTCCAGTCCATTTTTTAGTAATTTGTGTTGATGTA
TTATACGTTTTAGCACTATCATGTCTATATATTATGTGAAATATGCACAAACATTTCTAT
GACATTGCTATCGGTCTGAATAGGAGTGGTGAGCTCCAACTCTGAACTGTAGGAAGTTGT
ATCCTGAAAGGTCAGGTACTTGTAAGCTATGTCAATCATATTTTGTCAAGAAAGAATGAC
ATTCAGCTCAAATGCGAGAGATTGTGTAATGTAAATTATTGACATACTGACAAAACATTA
CAACCAAAAATAATGATAATATACTAGAGATATCCTATGCCAATTGTTGTGACGAACTTG
ATCTGGATTCAGCTGCAGATTAACCCATCATGTAATGCAGAATGTGGTTCATAGAGTGCC
CTTTTGGCCTGCTAGGGAACCCAATATTGTACTGTTGTCTTCAGCAATCAGTATGTGAAT
CCAACAAGAGCTATGAGGCTTCAGCATGAATTTGGTCAAGGGAAAGAGAATGACCCACCT
AACTGTTGATTGGCAGCTGATGATGGAGGATTGATTGCAATCCAGAGCAGTGAAATAGTG
ATGGAAACTAATCCAGCCCAGACATACACAATGGTGGGTGTCCTGCCTCTCCTGCCCATG
AGCCCCTTTGCAAATGGATATAAATGGGCAAGCACCCAGAAGCTGAAAAACACTCCACCA
AGAAGCTTGCTCCATTGCGGGATTGTGCTGTAAATTGTGCGGCTGAAGCCAACAGCAATG
GCAACAAGGTTCACCATGATGATGGTGAGAGGTGGTATCATCAATGAAGTCCACTTTACT
TCGTAAAGTTCTGCAAATTCATCATCGATATCATCACCCACCTGCTTTGATGTGAGTGTG
AATGAGATCTCAATTCCTGCAACAACTTTCAATAGACCTTGCATCACAGCAGCTAGGTGA
GCACTAGTTCCACCAATAAGCCAGAATTGTTCATTCCGCCACCACTCTTCCAGTGCAATT
CCAGACCACTTGATCTCCAGCATGGCCAGGAGACAAAGCGTGATGGTGATGATAAGTAGG
TACGTCAGGAAGGTGACATTGAGTGTTTGCACAATGAACTGCCCTGAGAAAAGGGAGAGT
GCTGGAAGGAAGCAGTAGACAATGAGGAAGATGGATGTGAAGGGATATATGCCAACATTG
AGGTACGCGATCCTTTGTAGTACCTGTGAAGCAAAAATGGTTTGTCATATTTTTGGTTGG
TCTACTTTAGCAAGGGATAAAACTTAGAAAGTTTTGAGGGGCTTATACCTTCATTTTGGA
GCTGGCAAACAATGCATTGTTCCGAGAGAAAAAGATCTCGACAGAACCAGTAGCCCACCG
AAGCACCTGGTGAAGACGATCTGTGAGATTGATGGGGGCAGTGCCACGGAAGGCATCACG
CTGTGTGACACAGTACACTGACTTCCATCCACGGTTATGCATGCGGTACCCTGTCACAAC
ATCCTCAGTGACAGATCCATAGATCCACCCCACACGAGTGCCCCACTCTGTCTTCTCCTC
ATACCAACATGAAACTACACTGATTGCTTCTGCCACAATGGATGCATCCAGTATTTCACG
TGGAATTGTTAGAGCACCAGGTGGACGTCCATTCTTGACAGATGGATGGTCAGCCAAGGG
CCTTCCCTGAAACTCTGCTACTGGGATGGAGTCAATCAGAAAGCTGGAATTTCCAAACTT
CTTCGGGAATGTGGCGAGGTTCATGCTGTCCCCATCAAAATCACCCATACGGAGAGCCAT
TGTCTCCTCGGGATTAGCATTGGAAGCAGATGCCTTACGGCGCCGTGGGAGGCAGCAACC
ACAAAAGCCTGGGCTGTGATCCTTGGAACGAGGTGGGTCAAAGCCATATAGGGCGATTCG
CCGGAAGAGGCATCCAGTGCCGACATACACTGGTCCTTGCAGACCGTCAAGAGCACGCAT
GTTTATGTCAAAGAAAACAGTATTGTGGTTAGCATACCGGTCAGAAGGGTCAATGCCTTC
AAACCTCTGAGGGAACTGCACATAGCAGAGTCGGTCACCACCACGGTCCATCATGAAGCA
CATGCCCTCCCTGAAGGCCTTTGAGTTGTAGACATAGTGATCACAGTCCAGATTAAGAAT
GAAGGGACCATTGGACATGATGGCTGATGCACGAACCAATGCGTTCATGGCACCTGCTTT
CTTGTTGTGATCATATCCCGGGCGTTTCTCTCGTGACATGTACACCAGCATTGGAAGTCT
TGTATCCACTCCTGAAAAGTCAAGAGGTGACTTTTCAATGTTCCCATACATTGGCATGTC
ACTTGGTGGTTTCAGCATAACCTGTGATATAGAAGAAATATCATGTAAATTAGTAGGTCT
AGACCAGAAATTGTAATTACGTGATCATCATTGAATCATTACCTGTATGATTCCTGCATG
ATCACCACGTGCATGATCTTGTGACGGATGAATCCATGTACCGGGCCAGTGAGTGCTATC
AGCCATCCATGTTGCCTTGGGAATCTTCACTGGCTCAAATTGCTCATCGCCTCCAGCCTT
GATCTTTTCCCTTTGAAGATTCATTGCCTGGATTTCCTCACGGGCATGGTATGCATCAGA
GCGGCGCCGGATGGAATCTGGCAAGCCGTTAACGCGGACCTTGAACTCGTCATACTCACG
CTTGATCCTTCTTCTGTCCTTGACAAAGTCGGCCTTCACCTTATTCTTGAAAGGATCTCT
CTTCAGGTTGAAGTAGCTGTCTGGGTTCCTGGGTTCAATGTCATGCTTCCTGCAGAATGG
CACCCAGAAATTAGCAAAGCTTGCTGCCTCAGCCATCGCCTCGAAGGTTAGCAGTGCCCC
TCCATCATCTGACACATAACATGCAAGCTTATCGACAGGGTAGTCAACTGCAAGGATCGA
GAGAATTGTGTTTGCTGTCACCAGGACTGGCTCCTTTTCTGGATCAGCAGTTGACACAAA
GATATCAATTCCAGGGAGATCAGATTTGCCTGTTGGATTGCTAGGCGTTGGCGTCTCAAA
CTTTTCTTTAAGCACAGAAAGATCTGTAGCACGGTTGATAGGGCAAAGCTTTGGAAGCTG
GTCCAACACCCATGAAAGTGCGAACCAGAGCTCACAAACAATCGACATTCCCCAGAGCCA
AATGGCGTCATCATTTTGATGCTTGATACGCCACATGAGGAAGAAGGCCAGTGCAACCAA
GCGGATGAGGACAAGGAGCCTGCAAGCAAGGGGCAGTTCAGACAAGAGTAAGGTATCACA
AAATGGCAATGCACCTAAATGTTGTCATGTATTAATAAATATCAGTATATTATATATGTA
ACTGAAATTTCAACCAACAAGTAGTAGAATTCTATGCAAGTGTGACATCTTTGCATTTTC
TTTTGAACTGCTATATGTGGATTTTGGTACAGTTTTGTGACAGAGAGCACATTTAACTAC
TCCGTGTGCACATGCTATGGTCTTTGGAGGAAAATTGCAAGGTTACTTCATACAGGCACA
CTTTTTAGCTAGTCTGTGTACACATACTGTGGTCTTTGGCTGAAATTGACAACTCAGTCA
GTCACTCTATATATGCATTTGATTGGTAGTGGAACCAATTGTATAGTAGGGTTATTTATT
GGGTTCCTAGTAGCATTTCTCTTTGCTAGAATACATTTACTTGAAGATTAACAGCATCTG
GCTCTAACCACTTTTAAACAATTGAACAAGGTGATAGTTTCATACCATCAATTTTATGAG
AGGCTAATGCAAAACTGCAGTCCTTTAGTTTAATCTAAAATCGATTGATTCATTATTCTT
GTGTTAGTGGGTAAGCCAGCATACTTCTTATTTAGGCATTAACTGTATATATAACTTTTG
GTTGACAGGTAACAGTAATGGCACAGGTTTTTAAGGAAAAAAGATGGCACCTGTAAGGAC
TGATGATAGCAGCTGGAATCTGGAGCTTGCGGGTGAGTGGCCGCCATGGTTTAGACATGA
GCTCCTTGGGGTGCCCTGGTACTCCATTTCTGCCATCATCGTCCACATTGTCGTCTGGCC
AAATGGCATTACCATAGCCATATGTCCCCTTGGTCTCAAAGAGCCAGCGGTTATGGTCAA
ACTCACCGGACTGGTTGTTCATAGTGCCCTGCTTCACCAAGGAAAGACGTCTCTCCATCT
TGCCCCCTGGTCCATGTGGCAGCGACAGAGCCCGTGTCAGCTCATTGCTGGAATTGGAGA
GGACTTCCTCCCACTCGGTGTGCTTGTAAAGCTCTTTGCACCCGGGGCAGACACCGCCGC
CACCCTTGACGGCGTCGGTGAAGCAGTCGACGCAGATTTTGAAGTCACACTCACAGGGGA
GGATGTCCTCCCCACGGCCGTTGCGCATGATCTTGCTGTCACACCCCTCGACCATGCAGA
TGGAGCCCTTGGGGCCAGATCGACCCATGTCGGAGTCAGGGCCCTGCTTGTCCATGACAT
GGGCACGGGTGACGCTGTTGAAGCCGCCGGTGAAGAGCGAGCTGGAGACGTACTGCTCGT
CGGCCTTGGTGCCGTCCTCCTCCATGGGCTGGTTGTCTGGCGTCATGGGGATGTGGACAT
GGTAGTCCTGGAAGTCGACGCTGCTGATCTCTGAGTCCAGGTCATCACGCGAGTAGCTGA
TGAAGCGCCCAGACTCGGTTCGCCGACCGAAGACCACCTGCGGCGCCGATGTTGGCGCCG
TTGGTGGCTTGCTGGGACCATGAGGCGGCATGCGGCTGGAGCCGCTGTTCTTGAGGATCC
CCTTGGACCCCATGGCCTCCTCCGTACGTGCTCTTTACTTTGACTCTCTTCTTCCTCGTG
ATGTTGTTGCTATGCTGTTATCTTGTGGCTGATCTGCAGGATCAATAACGTGCCGAAACA
AAGGAAACCATTGACATGAGTCTCGGTGTAGGTTTATTTTTGCCAAAACATATTTGGAAA
GAACAGCATATAGGAAATCAAATTGTAATCGGCAGATCATAACAATCAATAAACGCAGCC
TGGGTGGCGCAAAAACGAAATTCAAATGGATGCAGGTTGTTTCCGTCTTTTTTTGTCCTC
CAGAAAAACTGGGGAGAATAAATAGCAAGAGTATTTTGCTTGGTAAGGAAAGGAAAATGA
TGAATCAGTAGATTACATACAGAGTGCATCTGCATGCAATCAGGAAGGCGAATCGGGAAT
GTAGAGCAAGAATCAAGGAAGGTTACCTTTTCCTCCTCATCTGCTGTGGTGCGGCAATGG
CGATGGAACGGAAGAAAGGTGTAGTAGTAATGAGGAAGCGCGTCCACGGCCATGGCTGTA
TTTGAATGGTTCCATTCAATCAGCCAACTGGAGTGGAATCGAAGAGGTGCGTCGAGACTG
GGGAGGCGCCAAGGAGAGGGGCGCACGACTACTCGGTGCTCATGCATGATGCTACATGCG
GTGCAATCATCAGTCCCGTTCATACCGATGGATGCCTGCTTGCTTAATTACGTATAGCTT
AATCATCCACACCTGATACCTGCCATTACTATTTTTTTTTTTGTTATACATCTGCCACTA
CTATCCTTCTTACTGTTATTGGTTTTACCTTGTCCATCAGTCAATGATGTCTTTCTCACC
TAGACACTGACCCTGCAATTTGTTTTTGTTCTTTTGCTTTGCACCAGAGGGCCCAGGTCG
TGCAGCGAAAACCAAGTCAACACCCCCAACATACGGTGGGTAGCTTGGCGCAACAAACGT
CCAGGCTCGTGGTCAAAGCATCAACCAAATGCGTCGTGCTCGCTACTCCGAGTCCTCACT
GACATCATACACCCATGCAATCCAACCGCCAAATTCCACACATAGACAAATACGTAGAAA
AGATTTCATGTATAAATAGATTCATTTTAAAGCGCTGTACATGCAAATCATGCAATTTCA
TGCCTCATGTTTCTTTTTTCTGGTGTCTGCATTATTTTTTCGTGTGCCAGACCTCCTTCA
GATTTGAGCATTTGTCATGCATACGCTCTGTTTTGGTTCGCCCATGCGCGTACACCAGTA
GGTGATGCATGCGCTAGGCCACCTCAGCAACCAACGAACGCACGGATACTGAGAATATAT
AACACCTTCCAGAGGTCAACTCTGTCGAATTTTTCAAGTATCAACAACATGCATGGCATT
ACTTCACATGCATTCTGCGAGTTGCGCACACGACCAATCTTGTTTCCAACTCACGTTTTA
TAACGTGATCAAATCTATGCAAGTTTAATTTTGTGATACACGGGGCACACTCCACATGTC
TTCGTATACCATTGGCAGACCCTCGTCCTCCACGGAGTGTGGTGGTTTCTAAGCCTGGGG
AAGTGATCTAGCTCTTCATTGATTTTCGGGTCAGATTGTAGCTACAAGGCATCGAGTTCC
ATCCATTAGCCAATATATGTCAGTATGCCTCGCTCGTTGAAGAGGCTGGGGGCTATCATT
CTTTTCGTCCATCAGAGCATTTATAGCCGGACCCCTCATATATATCTTAAATGTTTGAAC
AGATCGTCCAGTCAGTGACCAGTCACAAAAATGTGACCCAAAGTTTGGATCCCTCATACC
CGTCTCAAACGCCTGGATTGACCGGCACCCCTCATATCCAGCCCAAATATAGGATGAATA
TGGGATGGTCCGGTCACGC