morexGenes - Barley RNA-seq Database

Contig contig_2547796
Source Contig contig_2547796
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_2547796 (8522 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location	No map location	No map location
Predicted Genes from contig_2547796

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_37114	4	2250 bp	AK252423.1	Available	Available	None
MLOC_37113	1	724 bp	MLOC_37113.1	Available	Available	None
CDS Structure of MLOC_37114

CDS Structure of MLOC_37113

Contig Sequence (8522 bp)

>contig_2547796 8522 assembly3_WGSMorex_rbca.fasta
ATAATAGACAAGTTGCTTTCCTAACACCCTTCTCACTTCCGTTTTCATATTTCAAAAACA
AATATGAACGCTGAATACGAATACGGAGCGGATGTTACTCGAATATGCATACGGATTGGG
TGTTTCTCAATTCAGAACCGATACAAATATCTTATAATTTAGTGGCATATTAGGTAAAGG
AAATAAGTCAGCAATTATATGTGACCTAAGATAATCAACTCGCACCATACAATAAATAAA
TGATAGACCAGTAGACGGAGAAACACTGTTGAAGCATATGGGGAATACCCAACCTTCTCC
ATTAGTTCGGACTTTTGGAGCAACTGGTTGGTGCATGAAGTGTGGTGTGCTATCAGAGAC
AGAGGCCTCGAGTTTGAGTCCTGGCTAGTGCAATTGTTTTCTACAATTGCTGCTTGCTCC
CCTCCACGTTTGACACGCAGCAAGACTGAGAGAGACTGCACACGAGTGGGGGTGTTCAAG
TATATGTGGAATGCCCAACCTTCTCCATCAATTTGGACTTTTGGAGCAACTGGTTGGTGC
GTGAAACCTAATACATACTACTATAATGCACAATAGTTTCTAAGTTAAATCATACTAAAA
AAGTAAGATTTGGCAACTTTTTAGGCTTTTAGAGCATCTCCAACGAGTGCCCTATAATAA
GGTACCAAATTATGCTTGGGAGCATAACTTGCAACCCCTAAAAGTGCTTTTTTACAACAC
CAAAAACCTCCTTCCCAGTGCTTTTTTATAACACCAAAATTGTGTGGTCCCCTGGTGTTG
CAAAATTTCCAACACTTGGTCAGCCCCGTCAATGGAGGAGGCCAAGATGGTCGACCGCAC
AGGGCCCCCCAAAATTTGGGGGCCCCAAATGACTGCTAGTGTAGTAGTAGTACATGTGTA
TGGATAGGTTCATCAGCCTGAGTTAATATCCATCGGCTCACCCAGCAAAAGCTAGAAAGA
AGAGAGCAGCCCATCTAGCACAACCAGCCCACAAGGCATCCTTTCCTTCTCTTTTCTGTC
ACGTTCCATCTATCGCCAGAGGCCCCAATACTCTGGCCTGTTCTCCTTCCACGCAATTTC
CCAATCACCCGCGCCGCCGCTGCTGGCTACCTTCTTCTGTCGATCGGCGATCAGCCGATT
GCCCAGGATGCTGACTGCTGTGCTGGCTGTCCCTGCCTCCAGGCTCTAGTCCCCGATTAC
CAGATATTGGTAATTAGTTTGCTTCTATTTCATTAGATTAAATGAGGAGAGGCAAACTGG
CAAACGGGGCTAGGTTAGGAGGACGGAATTACGGTAGTACTAGAACTTGACAGCACATCT
ATAATACAGTATACATCAATTTTTGAGGCATGATTTTTCTTTGTGGGAAGCATTATAAAA
TCGTCATGTATGTGTTGTGCGGTGCCTTAGTTTAACCTAGGTGACGGTAATTGATTTTTA
TTTTGTTCACACTAATTAGTCAACTTCATGTTTGAACAATGAATCATTAAAGTTCTTTGG
TTTATAGAAAATATGAAGACATAAAAATATACTCTCTCCGTCCGGAATTACTTGTCGCAC
AAATGAATAAAAATGGATGTATCTAGAANNNNNNNNNNNNTAGATACATCCATTCTTGTG
ACAAGTATTTCCGGACAGAGGGAGTAGTAGATTATTAAAATTAGTTCTTCTGTTATTCGA
ATATCTGGAGGCAATTTTGATTTTTGCCCCGGGACCCCGAATCTCTGGAGACGGCCATGC
ACTTGGTGTAGCTGTTGTATATTTGGAGTAAAACTTTTTGCATATATGGCACCTACTGGA
GCAGCGTTTCTGGCCCCTCGTGATGTAAAAGCGATCCTGCACTATTTTAGGGCACCTAGT
GGAGATGCTCTTATGTTGGGTACTCCTAATTAGCATATAGGGCTAGAATTGCTTAAATTG
GCTAACATATTTTTTTCGGATACGGATATATCCAATTCCATATCCACATTTGTTTCAAAA
TCCCATACAACATTTGAATTTGTAAAAAGAATCCGGATATTTTCCATATCCATTTTCATT
TTAGTTCGGATGCCAATGTTGACTTGCAATATAGGGTTTTCCCGAATATGAATATCGGAT
ATTCCAAAATTTCCACCGTCACTTTCCACCCTTCTATGCCGATAAACCTTTCTGACACCG
ACGCGCTACGCCTGCATAGTTCAAGGGTTCTTTTTGCTCCGGCGTAAGTGTTCACGTCCA
TACCGTATTCGCTCCATACCTCCTTCCCAGGGTATCTGTATTTGTTTCTGCTCCAACTAA
AAAATATGAAAACAAATGTGATATCACTCAATTCCGGCTGTTTCCGCTCCAATTTTCATC
CCTAACTCGGCATATGAACAGCAGAACATCACAGCATCTAACATTAATGAGAGAGGCACA
ATTACCTGCTGGTCATCATCATTTTCGGCATGTGTTGCTCCAAGCAACCTCCAACCTTCA
GCATTATCAGGGTTTTTTAAAACTTCAGCCTCTAGAGCAAGAGCAGCTTCACTTAAGAGG
CCCTTCCGGAAGAGCTCCTGCCCTTCCTGCATTGGATTAGGGTGGCCAACATATGGGTTC
ATCTCGGAAAAAACATAAACCCCTCGAGAAGCGCCAGAACTTTTGGAAGCTGACAGTTGG
CTCTGAAACCTACAAGCAATATACAATAATAGTTAAATGGTAAGCTGTAATTGCTATACG
TATGGGGCTTTTGTAAAACAGAAAATAACCAACCAATGGTAAAAAGAAATGACTTCTCAA
TGAATATTAACCAAACCCTAAGTTCTTTTAGTAATGTGACACAGAGATTGGTCCGATAAC
ATATCAAAGAAGCAACAGAGGTCGGCTCATCCTTAATACTATTAGCAAAGACACAGAAAC
AAGATACTTGTGCTTACTCATCTGCCCATGGATCAGCAGAGCTCTCACCAAAAGCTCCTC
CACTGAACTCCTCTGCCCAATCATCCACTTTCAATTTGGAGAACTCATCAACCCACTTCT
CGTTGAGCCCACCCTGATTCTGTTCACTAGAGAACTCACTAACCCAATTATCGGCTCCTT
GTGAAAGCTGTAGAACAAATATTAGTGAGGCAAAATCATCAGTGCCCAGCAGATATTAGT
GTGAAAGAAGGGACATCGGTGTATTTTTCCTAAATAGCTACAACCCACTACCTACTTTTC
CTACACATGCAAGCATGCCACATGAGCAAGTCCTGCATGCAAGTCATAAATTACATGTTT
TTCGCATTACTCTATGCATGCAGGGCTGCCACATCATCAATTCGTGCATGTTAGTTATAA
GTTTTTTTTTCATTAGATTTTGTATTGACAGTGTATGTTTTGGGCGATTGCAGCATACCT
ATATATTTCATCCTTCACATTTTTGTTAGAAATGATATTATGTTTACTGGAATTCATTTT
TTTATATGCTTCATGTTTTTCACCTTTTTAAGCTTACATTTGCTTTTCATTAGTGTTAGA
TGTTTTTTAAGCAACTATTTATGCATATTCTAACAAGATTCCTGTAGAAACGCTTGGGGC
ATCATCTAATATTGCTAAATGATAATACCATTATTACACCACACTGTTCCTTTTTTTTAC
ATTGCCTAGAAAAACTAGAACCCCGTTTGAGCATGCCAGCATGGCATGCATTACTTCACA
CACATCCAGCTCTCAGGTGAAAACTAAACCCCGTTTAGCACACCATACAATTAGTTAAAT
GCATCCAGCTCTCTGGTATTACCTCTTCATGCACAAACTGATCTGCCCAAGAGTTTGCAT
TAGCATTATGCTGTGTTTGAAATTCATCAGCCCAGCCACTGGATTGGGATGCTGAACCTT
GTTTTACTTGGTTATCTTCTATAATAAGTTCACCACGGCTCATCTTTGAAACAAACTGGA
AGAATTTAGAATTCTTCCAAAAAGGAAAAAAGAAAGTGTCATCAGGTGTTTAAGACAGGA
CGATCATAATGATGATCCTATAGTATAATATAAGGTTGCAAGCAATGCAGTTGATTAACT
TAATGTAAATAAACAATATTATTACTGGTGAAAGATACAGACTCAAGAAAGAGTTCTTAT
GACCCAATATCCACAAAAATTGTGTTTGAACCATGAAATATAATAGGCGGTATCTGTAGA
ATATCATATAAAAATAAATAGGATTACATATCACCCCAATTGCCACTAAAAAATAGTGTT
TTTGGCATAAACAGAAACATTGGACACGTGGGCGGTATAACATGATATATCAATAATGTG
TCGTACGCCAATATGAAGAAACAATACAACACTTATTCACAATATGTTAGTTCATTTCTG
CATATCCAATCGAGGTTCTTCTCTATCAGTTTGGAAAGCAAGATCGTATTTAGGAGGTTT
GGTCTGATTTTTGGAGGATCCATTTAGATACTTTATTTAGGCATGTTGGATCTAATCTAG
AACATTTAGGTTTAGCCTAGCATATCACGATGCAAATGCAATCACATCAATTGCAGAGAT
AACATGACTAGGATATTTCCTTATGAAGAAGAAAAATAAATTATGATGAGCTGTTGTTCA
AGCAAATTTTCACTGTGGGTAAAAACAATGTGCAACCAAAATAGGGTTACATGAATAAAC
AAGGCCATCATAAATACCTGGAACTTTGGGTCATTGTTACTTGATAATGTTTCTGCAAGC
ATACGGGATTGCTGCATAGCTGCGAGATTCGCCATGTTCGCTCCTCCCATCTGACCCATG
GCCATCTGAGACTGATGCTGAGACAACATAAAGTACATAGCATAATTTAAACCATGTATC
CAACAAATGAACATGCTCATCCAGAAGGAAACTAAATTATGATGGGTATGCAGATTTCCA
TACGAATTACAAGGATTTGTTTTTTTTTTTCACTTTAGAAGCCAACTAAAACTAGTTAAT
ATTTAAGAGATATGTTGAAAGAATGTGATCCTTTGTCACCTCATGTTCTAGAATAACTAC
ATTTAGTAGAAGTAAGAATTCTATGTTTACATAAGACTGTCTAAAAAAAACATACATATA
TAAAAAATATCTTAAACTTTATTTCTAAATACAGCATACAATTACTCATAGATATCATAA
TATCTCGCTCAATGGGTAGGGTAGGGAAACTATCAGATTACAACTGGGTAATGGCATACC
AAACCCACATATCCTTCTCAAACAAACTTTTTTATTGGATTGTGTTTCCTGCTGGATATT
GGCTATTTACTCACGAAAATGGAAAACATAATTTTCTAATGTTTACGAGAAAATTCCAGT
ACAAACAGAACACACTCAAGAATACTGCAGCGCATGGTGCAGATACAAATGAAATCCAGA
ATTGCATTTGGATACATAGATAGCCAGATATCATCATTTATTGGGCAATCAGATTATCCA
GATAAAAGGGTATCAATTGCAACATAGTTATACTGGCCTAGAAGCTAAAAAGTATCTTCA
GCATGGCTGAACTTGGTTCTAGGATGTGTTGTCTGCTCATATGATTAGTATAAATAAACA
ATGAAAAAACATGCTTCACAATTGATGGTTGTGAAAATGTCAAACAGGCTTTTACAAGGC
TCTGACCTGTTCAAACTCAGAGGCCCATCCATTGGGACCATATTGCTGCTCAAAAGAGTG
CGCCCAACCCGCAGGGTTATTATTTTGCTTGCCAAACTCAGTGATCCAACCCTCAGGGTT
ATTATTTTGCTTGCCAAACTCAGTGATCCAACCCTCAGGGTTATTATTTTGATTGCCGAA
CTCAGTAATCCAATTATTTGCAGCATTGTGCATTGGGCCTGATCTCAAAGCACTTTGGGA
TTGATTCCAGTACTCCTCCATCTCTGGGTACGGCCCATGCAGGGGATTTTTCATCCGATG
ATTATTGTCAATATCAAGAGAATGCAGCAATGTATTTACCTGATATACGGATAAAAGTGT
TACATTCATGAATGTTCTTCTAATAAACATTCATCAACGAAACATAGGCAGCACATGGAA
CTTGGAAAGTCAAGCAAGTCAACAGGAAACTACTGAGCTGAGCTAATGGAGGAAGGACAG
AAACAAGTGTTGTGAGAAAATTCGTATGGTCCATGGCAATTCCAAACACAAATGTAAGAA
AAGTTAACCTGTGCTTGTATATATTCTTCAGGTTGATCGGCCAAAATATGGCGCGCCATT
ATGCAGCTGCGATCACGTATACATTGCTTGTCGCCTTCGGACAAACCAAGAGCTGGTACT
GGGACAGGTTGAAATGGCACACCAGCTCGGCCACTTGAAAGAAAAGAATGCAGAACACCA
GATAAGACCCTTTGTGGTGGACCTGGAACAAAAGTTAGGTGTCATTGCATGTGTGGTTAA
TAGACAACCATTCACAGTAGACAGAAATGCTAAGACACAGAAATCTACCATCCAAGGCCG
GTCCCAAGGTAGGGCCTGCATTGTTATAAATTTGCTCAAACTCTGCAAAGTTTGCTTCTG
GCCCCCCAAATGCAGAATGCCCCGGAGGACGAAAAGATTCAACCCAGTCATTAGCAGGAC
CCCCACGAATGAAGTCGGCACCCTGCAAGTGTTCGACAACAGTTAGGAGTGGCCGAATGG
GACACAAAAGGACAGTTTTGGAGAATCGCCATTACCCGTGCAAATGGTCGTTGATCTTGC
TTGAACTCATTCTCAGAGCCAGGGAGAGTAGACAATGGAGCTGTGCTATAATCAGACGTA
GTTGGAACATTAACGGAGGCTCCAGGAAGTCCCTTTAGTGACTGCACAAAAGAAAATGTT
ATAACCAATATTTTCTTGGACTTCAGGTACAATTTTTCAATGCATTTCGATGTTAAACAT
CCCATATTTCCAATTTAATCCACACAAATTCTTATATAGGAACATGGAAACTGGTAGGAG
ACAAAAAAAAATATGTCTTCACATATACCTCGTACTGGTATGTTCAGAATAAGGTCAATC
AGAGATTCTCAGATAAGCTAATTCACAGAGTACTTTGACTTAAACTGGTGAAATGAGTGT
GCTAAAGGTTAGAATCCTAGCACCATGAACTCTTTTAACCCTTTACTATATTTTTTAACA
AGATAACAGCATAGGAATAGAGAAGCCTGACGATATTATAGTGAACTTGGTAGCTTATAA
TTTACAAAGCACTGACTCAAGTATCTCGCCCAGCACATTAGGAGCATGGTTTCAGAGTAA
GGTAAAAGGGAACAGATACGGAACATTGAACCAGTGATAGCTCTGGCACGTCGGGTCACA
GTCTAAACTCTAAACCAATACACCAAGCAATCAGAGACATGCGACAGCACAGCCCACGAA
TCAGACGTATTTTTCAGCGCATCTAGACCGCACGGGATACAGCACTGGCTTCGGGCAACA
GAAGCAGCATATGAGCACAAGAAACCTAAAGGGCGCCAATTGATCCAGGCCAGCGCAGAT
GCAGGGAGTAATAAGTCCTTAAGGTCGATAGTCTTGACCGACGGGGCGACGGGCTTAGGG
TTTACCTCCGCTTTGCTGGACTGGCCGAGAAGGGTGTTGGCGAGGGTGCCGAATGGGTTG
GAGGAGGAGCCCCCGTCCGGGGCGCAGTTGTTCTGGCCGGTGATGAGGTGGCGCGTCCCC
ATGTCCGCGGAAGGCCCCCGCTGGCGCCGGAAGGAGGCGCTGACGCTGCTCCGATCGCCG
GCGGCGAGAGGCGTTCAGCCCGAGGAGATGAGGAGGGAGAGGGGGGGAGGAGTCGTGCTG
CGGCGCGGTGGCTTGGCGGGCCTGGGGAGGAGTAAGCTGTTGTGGACCCGATAAGGCCAG
GACACGTGAGAGATTATTTTTTCTCTGTAGAGTACGTATGGGTGGTTGGGAACTTTATTT
TTCGTTCACACACGAGAAAAACAGGGAACCGGTTTTTTTCCTTTATAAAAAAAATCAAAT
TAAAGGTTGGCCGAAGGCTTGAAGTCTTTCCTATTCTACTAGTTCAAAGGTTCTTCTATT
TTTCTTTCACGTTCCAGTGTGAAAATAGGAAAGCTTTTCTTTTCTCTTGAAAAAACAAAT
ATCAAGTTGGTTGAAGACTTGAAGTCTTCCTTTTCTAGTCCAAAGGATCTTCCTATTTTA
TTTTGGCATTGCAGTGCGAAAACGTTGGAATTCCCCCGGTTTTGCTCTTGCAAAATTCGT
GAGCGAAAATGCTTACCCCCTGTTTGGATGTAGACAAACTGGCTCAGAATTGAATTGGAC
TGGAATACCAAATCTAAGATGGAAACGAAATGGCCTTCAATTCAAATTTTGTTGTTTGGA
TGTGCTTGGTATTTGTTGTTGAAATCAAAGGCTAGCACCTAATCTCTCCCTAATAATAAA
GCAGCGATGGCTTCTGTCGTAAGTCGTGGCAGTTTTACAAAAAAGACTTTCTATTTCCGA
GTATTCAACCCGTGGTCCTTTTGTAAGTTAAAAAACGTTTCGTTTTTACGTAAACCCCCT
CGCAGTCACCATCGGGCACCATGGCTTATCCATTCCTGTCCTTCACTGACGGGCGAGAAG
GC