morexGenes - Barley RNA-seq Database

Contig contig_2547683
Source Contig contig_2547683
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_2547683 (6830 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location
Predicted Genes from contig_2547683

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_37044	2	1711 bp	AK369448	Available	Available	None
MLOC_37043	2	1138 bp	AK250381.1	Available	Available	None
CDS Structure of MLOC_37044

CDS Structure of MLOC_37043

Contig Sequence (6830 bp)

>contig_2547683 6830 assembly3_WGSMorex_rbca.fasta
AAAAGGGTTCTAGAGGTGAGAATGTGTCAAGTTCTGTGGACCATGATGCCCAAGTCACGA
ATCCTCTCCCAGACGAACAGCTGAAGAACATGGATAGGATCTTTGAAGGCACCACCAATC
TATCAAATGGAATTACTTTCCGAGGTCCTGGAGTGAATGGAACCAATGTTGTTGGGGACC
ATGAGGCTTCTTCAAAAACTAATGCATCGTCCGACCCAAACACGAGCACTCCCAGCATGG
TCTTGGAAAGCAAGCCTGATCTAACTCCAGTAAATATGACAAGCAACCATGCTGAACCAG
TGACAAGTAATTCAACCTCTTTGAAAGGTCAGCATGAGCAGCCAGTAAATTCAACAGCAG
CATTGGACAACCAAACAAAACCATTCACTGACCTGACTTCCGCCGAGCTGAATTCTCCAC
CAAATGGGACCACGGTGGCTTCGGGCTCAGCCGATGCCCAAAAGGCCACAACCAGAGACG
GAGACAGCAGTGGTAACAACACCGACACATTCTCCTCTCTGGTGAACAATAAAGAAGAAG
CCGGCGACACCCAGAAGGAAGACGCAGACGTCTCGACGAAAATCATGAACAAAGCGATCG
GCGAAGGTGAAGTTCTCCTGGAATGAAGATCTCCTGCCTCTCTTGTTAGCCGCTTCCGGC
ACGACCTGTAAGTTTGTAGGACTTCCATCCAGGATGAGCGCCGCGAGTGCCCCGCTTTTC
GTGTAAGTTTGGTACGTAGGGACCTGCTTTGTGTTTGCCTAGAGTACATCACGGCATGTA
TGGGGGCATGTGACGAGCAAGAAGCTTGTGTTGGAAGAGACATTATACCCCCCATTCGGT
AGCTTTGAAGCTTTGCTGCTGGAATGCCAACTGCCCAACTATTAGTGACAATGCCTGCCT
TGTCTATACTTGTGTTGCTTGCATGACTAGCATTAGCATGTTGGTTCCTGATCTTTTGTT
TGTGCAGATTGTGTGTCGAATTGAACAAAAGGCTTTGCAAGTACGCTTTCAAGACAAAAC
ATTCCGTTATGTGGTGCAGCCTGGTATGTATAGCTGTTGCTAATAAAACTCACCTGTATG
AAATCATAACCGTCTGCTGCACAAAAGTGTTCTAAGACTTTATTTGAATTCCTGGCACCC
TAGAAAATGTTATATGCATTCCCCGCAAAAATATAACACCATCCTGACTACATCCTCCGT
TCACAAATATAATGTGTTTTGCTTATTTTAGTATGGACTACGTACTGACTGAAATAAGGG
CAACTCCAACATGGCGCAAATGGTCCATGCATGTCCGGATGAAAACTTGGCCTGACGCGC
ATCTCGACACAAAACATTTTTATATACATACGATTCGCAAAAAAGGTTAGAACACATATT
CGTGACGTGTATGTGGATGTGGGCAACCTGGCAATGTCATCATCGAATCCAACACAATTT
ATGGTGTGCGGTGCCGTCCAATTCCATTGATTGTGTTCATGGTGTTAACATATCATTGCA
TCTTCTTCAGGCTCGACCCAGCGAAATCCTCTTCCGATCTCGCCACCACATGCGACGTTG
ACACCTACCCTATACTAGCATGTGTACTGTACAAAGTTTACGATGTGCCGGCGCCGTCCA
GGTTCACAGACAGCGTTCATGGTTCGGTCTTATCTTCACTCTGGGCCACTCCTAGCATGT
ACTAGTACGGGCACAGCCGACCTGTACCACGTGCGGCCACTTTCATACTCTATATTGGCA
GAGCAGGCAGCTGGAATTGCATCGAAAATTGCTCCATAATTAAGCCACTGGAATTGCAGG
CAGCTGAATATGATGAACAGCAAGCTATACTGACAGTGCAGCAAGCAGCCAATTTGGCTG
GCAGGCTGATATATTTACAGCACCCAATACAAATCCACGTTTGCACGGTAAGCTAGCTAG
CAAATGGAGCTAGCTAACCATCACGCGAATGAATCGACGTAACCCGTGCGACGAATTCTT
CCCGGCAGGCCAGCCAGGACCGAGCTAACCCGCCCATGACAAAAAACATCCGGCACACAC
ACGACACGACACAGACGCCACAAGACCAATTGCGGGCTAGCCAGCCAGGAGCTAACGCGC
GCATGAATGATGCTACCACTACTACTACTGCTACGGTTCCTTCGCCGGGCGTGTGCTTGC
AGGTTAGCGAGGAGCTAACAAGGCGAGGGGCAGACGCCGCGGCTTCTTTATTTTTGTATC
CTTGAACTGAACTTGAACGGAGTGGGGAGAGGCGAGGTCAATTAGGTATTGGCCTGGGTT
CTCTCCCCCGATGTTGTGGTCGTCTGCTTGGTTGGTTTACCCGCAGAAGCTGAGGAACCC
CATGTATTCGTGCTTGTTGATCATCGAGATGCTCTTCTCCGTCCCGACAACACCTGCGCA
AGCAACATGTCGTCAGGAAAACTAGCAAGGTTTGACTTTCCAGGCAAAAGTTATTCAAGT
TGTTTATAATCACATAAGCTATGCAGGTTTGTTCGCGAAAAAAAAATCAAGTAAGTTACT
TCCAAGGAAGACTGTTACTTCAAGAAATAAGTGGTTACATTAGTACCATAGTGAATATTT
TGTTTAGATATTTTTCAGTAAAACCTTGTAACGCCAGTTTAACTATTTATTTATTTCTTG
GCTGAATTTTGGTTATGCTGGTGAGCAATTGGTTAAATCAAAGGCAAAGTTGTAGTGATC
ATTACCCATGGTAAGAGCACTGGCGAAGATGACGGAGGAGAGGATGAAGACGATCAGCGA
CGCTCTCTTGAGCACAAGCACGATCTTCCGGACCAAGCACTGGCCCCAGAATCCAGCCAA
TATGGAGATGAAGATCAAGTAGAGAGCTGCACGAGGAAGCATAAAACATTGTTATTAAAC
AAGAATTAATTTGGCTTTTACTGCTTGCCAAATCTCTAAACAGCAACCAGGAGCATGGAT
TTACTTACCATAAGGGATTGGGAACCTTCCTAGAAAGTAGAATTCGACCACGGACAGAGA
CGAGGAGAACATCATCACAAACGTTGCTGTGGCACTTGCAACCTGGCAGGCACAAACAAA
GAGAACAAGTTACAGTATTTTTCTTTGCTATGTTGTTGACTATTTCCTGTTGCACATCAA
AGCAACAATAATTAATTAACAAATGAAATTTTGCATCAAAACATGGAACAACCCATCCAA
CTCAGTGGTGTCGCAAACAGTATTAAGACTATCTAAAGATGACGAAAAAATATCAGACAA
TTCTATATCCAACTTGGTTATCAAGTTCCAGCCCAAATAATCAGTATGTCACATTCAGCA
ATGAATATGAATAGATCTAGATCTAGGGGAAATTGCGTGAATAAGGTAGCTGGCCCACAC
ACCTTCCATCCATCAAAGCATCGCATGTAGGACACTAAACAACAAATAGCACATGGGGTT
CAGCACGACCCCATGGTCACTACAGCCAAGCTGAACATCTAATGCCATCGGTTTCTTTTT
GGGTGATTACAGGACCGTGTCCTCATGCAAATCATAGGGGAGAACAAGGCTAATAAGCTC
CATTCACTATGCGGTTGCTGAGAACATGCTGTTTGGTGAACGCTTTGCATGAAACCAAGT
TTGAAGGATAAAAACAGACAGGCTCTTGATGACAAAAAATACAAGGACAATCATGGAATG
GACCATGTCAAAACAAGCAAAGGACTGCAATCTACTGTATTGAAGAACTCCTGCCTACTT
GCTAGAGTTAACCACTTAGGTCAGACCTAACTTAGATCTACAGTACACCTAATACATATA
TTTTCTGAATTCAATATCTTAGAGATGAGTGACAATCATATAAATAGGTACAGACGGGAG
ACGACTACCACTAGTTAACTGGAGGATAGTACCGCTCTTCTGAATCAAAGAGGTATACGG
GAAGAATTATATGGAAATATTTTAGAAATTGAAGAACTGCTGAGATGATGCAGCCTTGCT
TTTTTACAAGTCCAAAACTGATGTTTTATATCACAAACATATAATTTTATGTAGCCTGCT
GAAATAATACTGTAATAATTTGTTTTGTCATGCTTTAAGCCTATATTACTGAGATCAAAT
TAGAAAAAATAAAAATTGCATTTTGATGCTAATACAGACATGGGATCTAATCTCTTTGGT
AGGAATACACGAAAAGATATATTCTTATCTTTCTTCCCCAGTCTTGTTCACTGATACCAA
AATGGCAAAATGCATTTAGCTCTTTCCTGAATGTCTTGCAGCACTATACACAATAAATTC
ACCTACAGTGCCTATCTGGTGTTCCAAAGTATCATGCAGTACTGGTAGAGATAAAACATA
TGGTTATGACACTTGTACTATGCCTCTTTGGGAGGCTAACTACGCTCTCTCAAGTTTCAC
ATTTGCGTCAGTGCATGACAAGCAAATAAGATCCAACACAAACACATGAATGCAAGGCCA
TATTTGAAAGTGAACCGCAAGAAAAGAAACATTAACACACGAAATGATTCAAATACCTGA
GGGATGCACCCTAACTCAAGAAGTAGTGGGCCGAGGATGAAACCGCCTCCAGAGCCGAGA
AGACCACCAACTGTACCGCCCAGGAGGCCGCAGAAGGCGCAGAAGATGAGCTGTGTTGGT
GACCACTCGATATTGGCCTCACAGACACACTCCAGGTTACCATTCATGCGTCTAGCACGG
CTCTCCCTGCACAGCTGAACCGCTTTCCACACGAATACACTTACTGCAGCTGGGATCTGT
ATCAATCGACACACGTGGTTAGACTGTATCAGGTAGAAAAAGGTTGCATTGCAACACCCA
ATTTGTGCAGTGTACAACCGACGGAATAGTTAAGGTTTGGTGGAAGTTAAGAGGTCCTTA
AAAACAGCTGATGGATGGTCTAAACATGCAAGTCCACCAAACTTTTCATGAGTTTTGAAA
AGACATATGCATGTCCATTGCAATGATATGCTCTCAAACGTAAACAGAACGTTGAGCATA
ATGTACAACTTAAGTGAAAAGGCAAGATTGGATCTAATTGTTCAACTATAAAGTAGTGGC
AGGCTGCATCGTGATTCTCACCTGGAAAATATTGATCACCCAGTAGAAAGTGCTGCATGT
TTTGGAGTTATTCTGCATAGGAGTGAAAAATTACAGAAATTAGCAACAACTTTTAGCCAA
CATATGTCTGAAAAGGTTAAGGCACAAATGGCAACAGAAGAGCAGGAGCCTCGCTGTGCC
ACGAGGTAGTAATATAAACTGAAGAAGTTAGTAGTAAAAGCTGACAAATAGAACCACATG
TACATGTGCTGAAGAGCTATAATTGACCGTGGACACTTCATACACAGCACATGTAAGATG
TGCTTTGCTACTGTACTTATGGCTTATGTGAGAAAGGGGGTGACAAACAACCATGTCACT
GTCAAATCCAATCAGTTTATGTTCCTAAAGGTTATCAACTAGACAACATTAAAAGTATGG
AACTACTGCCATGATGCATATGAAAGAGACCTTCAGTATCTGCAGCACCAAGAAAGATGA
CCAAACAGCCAGTAGCACTAGGATATGCTTCCACCTCAAGTTGAACATCAAAGTCTCCTG
GAATAAAAAAAACATGGACTCAATTATTAGGGCACAAATTGACAAGCTGTACTTTTGGGG
TTTTGTTGTGCTGTTGCATGTTAAGGGCATCCGCCAAAGTTACTCTAAACCAGAGAATCA
TAAAAAATACTGTGTTAACTTCGCTAATCATGTCACCCTCGGAAGATAAACTATCCTAAT
CATATGGTTGCTTCGAAAGGTGTATCTAACAGCAACCAATCGATCTTAGTTATATGTTCA
GGTCAGAAAAGCCTCAGAGTTCAAAGTGGCAAGTATTTGTGGCTTACCAGGCCAGACTTC
TGCGTGGGCTTAGACTGGGGCAGGAGAGGCTCTGCATAACTCGGGTCAAGAACCACTGCA
GATATTGAGTAAAAAAATTACAGCATGTTAAAAATGAGAAAAATGGATACTGACTGGAAA
CTTCGATGCAAGTAAAAAGTTAGTAGTACCATCGTTGGTAGCACTGGCACCAGAAGACTT
GGACTGGGTTTCTCGCTCCCGTGTCTCCATCTGCAATCATTCACACAAGGATGTTCACAA
CACAATCCTATTAATGTTAAGGCAGGTAACAGGGGCAGGGCCAATGTGACAAGAACTAAC
CAGGATCCTTGTCTCCTCCCTCCACATGAGGATGCCTTTGTAGAAGGACCGCGAGGAGGT
TCCTGCAAGGAGTTGATCACGCGCCAAAAAAAACGTCCACTTTAGTGATCTGACTGACAA
GGCACACAAAGGAGCTAGGCCGCCAGCACGAAAGTCAGGGCATGGCTTTATTATTAACGG
CACGTTGTGGCAGCACGATCGATCGAGCGAGGACACCAACCTACGAAGAGGATGATGATG
AGGACGGTGATGAGCCAGTAGGGGAAGACGACGCTGAGCTCGACGCCGATGGTGATCCCG
AGCATGAGCATGGGCTGGAAGAGCAGCGCGAGCTTGTAGTCGAGCACCGGCGCCTCCTTG
GTCGGGTGCGACACCTGCAGGTTGTACCAGACCGACGACGCCGACGCCCCCATGATCATG
CCTGCGCGCAAGCAAGACAAAAATTCCACGCGTGTGAGCAGAATCGACCCGTCGGACGGT
CGAGACGGGTGGTAGAGCGGGCGGCTTACATTTGGAGAGCGCGGCGGCGGACTTGGTGTC
GAAGCCGAGGACGAGGTTGAGGAGGGGCACGAAGATGCCGCCGCCGGCGACGCCGCCGCG
GGGGGATGGTCGGCAGACCCGCGGCTCGCCGGCGTCTCGCTCTCGCCCCG