morexGenes - Barley RNA-seq Database

Contig contig_2547657
Source Contig contig_2547657
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_2547657 (5615 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location
Predicted Genes from contig_2547657

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_37019	1	677 bp	MLOC_37019.1	Available	Available	None
MLOC_37018	8	2035 bp	AK356522	Available	Available	None
CDS Structure of MLOC_37019

CDS Structure of MLOC_37018

Contig Sequence (5615 bp)

>contig_2547657 5615 assembly3_WGSMorex_rbca.fasta
CCCCCCGCCCCCGCCCCGCCCCCCCCCCGCCCCCGCGCCGCCAACGGCCGCGCGCGGGGC
CACGACGGCCACGACGACCCCTGCGCTGCCGCCTCGGTGTGCGACGGCGGTGGAGACCCG
TTCGCGTTCCTATCGGAGGACCGCCGGCCGCCGCGGCGGCCGGGCCCGTCCCCCGCCGAC
CCGTTCCGCAACAGGACGCCGGCGCTGGGCGGCCTGTACGGATGGGTCAGGACGCTGCTG
CTCGCGCCGGTCGCGGTGGTGCGGCTCGTGCTCTTCGGGCTGTCCATCGCGATCGGGTAC
GCCGCCACGTGGGTGGCGCTGCGCGGCTGGACCGACTCGCGGGAGCGCCCGCGGGAGGGC
GCCGGCCCCATGCCGGCCTGGCGCCGCCGCCTCATGTGGGTCACCCGGCTCTCCGCGCGC
TGCATCCTCTTCTCCTTCGGGTCAGTGCCTCTGCCTCAGCGTTTTGCTGTTAGCAGCGTA
GCTCTATCCGAATTGGGTTTCGATCTGATCTGAACATCTGGCGCTCGATCGATGAGCCGC
TGGGAAGCTTCGATTTTTTTTTTAGTACTAGATGATTAGGTTTCGGCCGCGAGGCGACAC
ATGCCGAAATTGCCGCAGATGGATGCCTCGATCGGCAGATGTTTGGTTCGTTTGCCGAAT
TTTGGGGGATTTGCGGCACGTGTGTGGGCAGTGATTTGTTTGGTGGGGGCGACGCCGACG
CCGTATCAGTTCGGAAGGTGAAGGACCGTGCGGGTGACTTCGTTTGTTACGACATGCACT
TAATACGGCTGACCGACAGGAGCTGGAAACTGATTTTTGCACGGTCCTTCTGGATAGCTT
TGCTTGGAATTTGTAGATCAGAACATTGCCTCGCCAATCTGATACCAGGAGCCAGTTAGG
GAGAGAGCTGCCCAAGAATTAGAAGAGGACAATCATTTCAACAAAATAAGTCCCAGAAAT
TTGGTTGCGCCCCTATTAATTAGGGGCAGAAATCAGGTGGTCCTTAATGTGTGTGACTAT
GGATAATTCAAATGGGAATAATGTGTAGATAATTCAAATGATGATGATGATAATGGGCCC
CTATTAATTAGCGCAGTTCTTGGGCTGTACGGCTTTATGCTTTACATTGCTGGGAATTGC
TCACTTGAACGTTTTGGATACAATTCATTGATGTTTTTAAAACGATGTCGAAGTGGAGAC
TGGTGAGGAAGCAGATGGATACCTTGCTTACCAACCTTCCCTGAAATAAAATGAAAAAAA
TAACTGGCGGAAATCATTTGTACAATGCTTTCTACTGCTTGTTTATACTTGAGGGTTTCT
GGTTTTGACCGCATACTTATCATATTTTACCATCTTATAATGCTATTGAGTTTTATAATG
CTTTCTACTGCATAGACATGACCGCATACTTGACTAATATTTGTCGGCCACTCGATTTGT
ACTCTCAGGTATCACTGGATCACAAGAAAAGGAAGGCCTGCGCCTAGAGAGCTTGCTCCT
ATTGTCGTTTCCAATCATGTATCATACATAGACCCCATATACTTCTTCTATGAATTGTTC
CCAACCATTGTTTCATCGGATTCCCATGATGCCATACCATTTGTTGGGACAATCATAAGA
GCAATGCAGGTATGTGCATTTGCATTTTCCTCTTAAAGCATCTCAATTGCAAGTTCCTTT
CAAGTGTCAAATTTTATGACAATTTATACCTCTCTTACAGGTTATATACGTTGATAGATT
CTCGCCAGCTTCAAGGAAGTCAGCTGTGAATGAAATAAAGGTTAGTATGCTTCCCATCAG
GCCTTGACCCAATTGCTGTTCTGCACTTACTACTGTCATCTAAAGTGCATGGCGTAACTG
ATTTTAAAAGTTGATTCCATGCAAATCATACTATAACATAAGACAAACAACTTGATTGTC
TATTAGTTATTTTGTTCATATGGTACATTTTAGGATGTGCTTTCAGAGAAAGGCAGCTGG
CAATAGCTTTCCGCGTGTCCTGTTGTTCCCCGAAGGCACAACAACAAATGGGAGATTCCT
GATTTCATTCCAACATGGAGCATTCATACCTGGCTACCCCGTTCAACCAGTTGTTGTTCG
TTACCCCCATGTGCACTTTGACCAATCCTGGTTAGTTTTCCCTAAGATCATACATTCTTA
TTTTGTTTTCTTTGCGCTGTTACCTTTCATAATTATTGTTTTGTTTCAGGGGAAACATAT
CACTAGTAGCACTCATGTTCAAGATGTTCACCCAGTTTCATAACTTCATGGAGGTCTGCA
TTTCTTGCATACCTCAGCCACTGTCTCTCATGTTTATTGGCAGCAACTCCTCACACAATA
AGCTCATTCCTTATATGAATAATTTATTTTACAGGTAGAGTACCTCCCTATTGTCTACCC
CCCTGAGATCAAGCAAGAGAATGCCCTTCATTTTGCAGAGAATGTAATACTGTTTTACTC
AAATGAATCGTCCTTTCAACACTAGTTGTTTCTGTAGCAATGTGATGATAATATTTTTAT
TCTACAGACCAGCTTTGCTATGGCACACGCCCTTAATGTTTTACCGACATCTTACTCATA
TGCTGATTCAATGATTGCATCAAGAGCAGAAGAAGCTGGAAAGGTAACAGGCCACCTACA
ACAGTCTCTATATTCTAATTTCATATGCCAGCTTTGACCTTTGTTTTCTGGAGTCCTTAC
CATATGGAATCTTCCAGAACTTCAAATGGTGACAACTGGAGACAGCCATGCGTTCTCTTG
AGTAGGAAGTAGGAATTTGACTCTAATAAGCTGAGTTTCCGTTTGCAGGCCAATTGCTCA
AGTTATATGGTGGAAATGGCTTGGGTAAAAGAAGTAAGTCTTTCTTAAATTACACTATAT
GTAGAATTTGGTGAACAAACCTATCGAAGAAACATCATAAGACTGTGAAGTTGTACTATT
ATTGAAGAAAATGTTATGGTACAACGTTGATTTCATAAATTTGCCTCTTTGTGCATCTAC
AGGTATCTCTTACTTCACTATAGTGAGACATTTTTCTTCTCTGCGAGGATAGATGAATCA
TAGTTGTAGACCTGTAGTTGATTTTTTTTCCATGATCCATGCAGCTTTTTATTTCACATG
TTGGCTCTCAGAAGTATTGTGCATACTGCTTTCAGTTATGTGGTAGTATCTAATTTTTTT
TTACATCTGTTTTTTCAGGTGTATGGTGTAAGCACAGCAGAAGCAATGGAACTCTTGGAG
CACTTTTTGGCTATGAATCCAGACAGCGAGTAAGTTCTTCATCCCTTAACTGACAACTAC
TGTATTACCTTATAGAAGATTATGAAAGTTTGGTCATTAAGGATTGCTTGCTTAAAGGAT
GTAACGTTATTTTGGTTCTCTGTTTATAAGTAGACACGCGTATTATTTTCTGCCATCTTA
CAGTTTAGTGATAAATACCATTAACCAATTCTTGCAGTGGACGTGTTAAAGCACAAGATT
TTTGGGCTCTTTTTGGCCTAGATTGCAGTCCTCTATGCAAGAAGGTACAGACACTGTCCT
TCCTGCAAATACCATCAGGCTTACTTTCCTTGAAACAAATTGACAGAAAGCTGACTTGAA
AGTATCATCTTTACTGAACTTGCATATTTGTTTCAGATATTTCACTACTTCGATTTTGAA
AATAAGGAATCCATCACATTCCGACAGGTATTGACTTAAAACGCAGTCCATCTCGTATCT
GGCATATGGTTCCTACATATATGGCCATATGTTTACCCTGTATCGTCGTAGGTTATTTGT
TGCATGTTTTCCTAACATGCTACCACGGCACTACCTGATGTGCACAGTTCTTGGTCGGGT
GTGCGCACCTCAAGAAGCAGCCATTATTTGAGGGAGTGTGCGAAACTGCCTTCGAGAAAT
GCAAGGCCCCGGGGACCTCTGACATATCCCTCGCACAGCTAGCCAATGCCCTGCGGTCGG
GCATGGTTCCTCCAGCAGACGACGGGGTGAGTTTCCCATCTTCAGGTCCGCTTGGAATGC
CGGTCTAACGCTATCAACATTACTGTGCCGACTCACCCTGTCTGTTCTCCGATTCCAGAT
GTTGAAACTGTTCGAGATGTTTGACATTGACGACGACGACAAAATAAGCAAGGACGACTT
CGTGGGATGCCTTGCGAGGTTCCCTTTCATGATCGCCCTCTTCGCCGGCCGGATCAACGG
GGAAGTTTACATCGAGATAGTTTGATGGTTGATGGAGTTGTAACCCCTCAGTTTATTGGT
TGCTGGAGTTGTTACCCCTCCTTTATTTAGGGGTGGTCAAAGTCCAGCTTATACCCCCGC
CGCTTTGCGCATCTCAGACTGGCTAACCAGTACAGCGCGGCAATTTTGTTTCATTTGTTC
TTGGAGGGGATATGTGTAGATAGGGATGTTGTGACACAATGGATTCTGCATATGGTTGTT
GAACTGGATGTGCACATAGAAAACACCTGTAACATCAAACAGTAGTTTTGGGGAAGATAT
TTCTGACTCTCTCTGCACGTTTATAAAGTAGTTCTTGGGAAGATATTTCTGACTCTCTCT
ATCACGTTTATAACTGAGGTAATGCATGCTTATACTCCCTCCGATCCAAACTAAGTGTCA
TGGTTTTAGTTGTGACACATGTTTTGAATCGGAGGGGGTAAGCGGGTTGTAGGGTGTCGG
TTACGGGTTGCTCGGGGGTCGGTGTGTTGATGATGTCCTTAACGGTTTTTATCAGGGTTT
TCATTAATTAATCTGGCAACTCTTTTCTGCTTTATGAATGGATCAAATCGTAAAGCCATG
TTTGGATTCTCGTTTTTCTCTTAAATACATTTGTAAAATATATACAGACCTCCGGTGATT
GTTTTGGTTTCCGGGTGTAAATACCTCTTGACCTGTAAATTACACCCGGAAAATATATAC
ACTTGTACTAAATTACAACCGAACCAAATGCGATATAAGGGACCGTGTTTCAAAAAAAAA
AAAAACTGAGATAAGCCTGAGAAAACAAGTCACGCGGTATCAGCATGCAACAGTGTCTTT
TATGGACGATGAGTTGAGTATATACTCAGTAGACAACATGGTTTTTCATGGACGATGAGT
CGAGTCTGGTCAATCACATTGCAAAGTAAACACATCAACTGCACCTTTGTTTTCACGTTT
TATGGCTTTTCCGAGAGGGTATTTACACAAAGGAAAACAAAAAAGAAATGAAGAGAGCTA
AAAACGAGAAACGGCTTGAAGGAGGCTGCCTACAAATTTAAGTCTGCCGTGCCGCAGCAC
GAGACAAGAAGATTCTTTTTTACAGTATATGTATGGTGCTTCTTGTCTCTTTTTTCTTTT
CTCCTGTTCTGTTCCTGGAATATCTTTACATTACAATGCACTTCTCTTTCTTCGACTCAG
TTTTCGCAGGCGGCGGGACATTTGACCTCTGCTGCAGAATTAAAACCACAAGTAATTCTC
AGACAAGTGAAATCATGAACCAGCAATGCATAAGAAATATTACTATTATGCAGCATGGAG
CATGAACAGGCCAGGCATAAGAAATATTACTCCCTCCGTTCCTAAATNNNNNNNNNNNNN
NAGATTGTACTATAAACTACATACAGATGTACATA