Map Locations of contig_2547629 (6070 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_2547629

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_37005 1 980 bp None Available Available None
MLOC_37004 2 874 bp AK359488 Available Available None





CDS Structure of MLOC_37005






CDS Structure of MLOC_37004






Contig Sequence (6070 bp)

>contig_2547629 6070 assembly3_WGSMorex_rbca.fasta
CCCCCCCCCAAACACAATGGAAGCCCCATGTATGCAATTAATCAATTCGATGTCGTGAAA
ATTTACAGTAGTAATGAAGTGCCAAATGAATAAGAAATTGCCACACAAAAGCAACCATTG
AACATACATCAAATTAATTGAACATGTCCAAAGGACATACGATAAGGCGGGCGATTTCGC
GCAATTGCATGTTCATAACTCCATCATCCCATTCTGTAAGCAAGGAAGTAGTAGTTCTTG
TTACGTTGGTTCAGAAAATTTACTTGCATAATCTAATGTACAATGATCTTGATGTGTGGG
AGTATTAGACTGAACGAAACACCAAAATGTAGGACTTTTACTTTATATAAGAAAATAGTG
AAAATTGGAAAACACAGCTTCATAAAACTGTTTTTCGACACTTCAGTCTCCCGGAAGTCT
GAGATATGATACAATTTTGTTTATGCGCAGCCCCGGTCACCAACAATGAGTCAGATCGGA
TTCGTCAATCGTAATCATAATATTATCACAGTGGTGTTGACAGGCTAAATAAAGGCCCCA
GATCACCGTGCCAGCCTCAGCTTCAGCTTCGTTATGGTACGTAAGTGTCCCGATTCTTTT
TTTACAGGGTAGGTGCCCCGATTCATTACCTTAACTACTATAGGCTATAAAACTTGGCCG
CTCCTATAAATCAAACGACTGATTTTGATGAAAAGTCAGTCGGATTAACATCCGTTTGAT
TGCGTCGCTGACGGACATCGGATTTGTCCCCTCCCCCATCTCTATCCCTTGCGTTTCTCG
ACAACAATGTTGCCTTGCCGCAGTAAAGCTCAACCCCCGTGGGTCATAGCAGCCGCCGTC
GGTGAGGTCCATTGTGTTGCAGCTCCCATCATCGGTGAGGTCCACCAGTCTTAGGCTCCT
AGCACGACACGTTGCTCCGCAACTCCATCGCGCCAGCGATGTGTTGCATTACAACTTCCG
TCACCGATGAGGTCCACCGATTGCATCACGATGTGTTGCAAATGCAGCTCCACCAAGTGT
CGACTATGAGACGACCGCAACAGCATGAACGTTGCACTGCAGCTCTGCAGCCGGTGATGG
CGGTGAGGTCCGCCAGCGAGTACAACATCACATATTGCACTGCATCTCCGCCACATCCGC
CTTGTCGCGTTGTGCTGCATCTCCCCGCCAACCGGTGTGTTGTACGACAACTCTACCACT
CGTCGAGGTCTGCAGAGGAAGCAACACCAAGCGCAATGTGCAACGCTACTTCGTCAGCAG
CACCGCCGACACTACACCGACATGCTTGGCAACACCAACACATCAACAACTCGATGACCG
ACGAAGGGACGGAGCGTCAGTGCACCATCAGCGACGACAAGAGCAGTTTTGCATCGGAGC
ATGAAGCTTGGGCAGCAACACTTTGGATTGCTCGTGAGCCGCGTTGGTCGTCGGAGAGAA
ATAGGAAGAGGCGAAAGGTGAAAGACGGAAAGGGGATCAACCTAGGAAGGAAATGAGTGG
CTCGCAATTTTCAGAGTAACTGGCTTACAAAATACAAATGCATCGACGTTGCGACTGTTA
TGTTCAGGGGGGGGGGGTCGAGCTATGCCATCCTTAGGAAAGCAGTTCTTGGCTTAAGTA
CTTCACATGCACGCTGATGGCAATGCCGTTATGGGTTCCGAGATCGATCGAGTGCACAAT
GTGATTTGCAGATGTACGCTGAACCATTCGTGGGTGTATGTGTCCCACCCCGTTTGAATA
CCAAAAGATTCCTCTGTGTTCAGTTGATCCAAAGAAAAACTGGGTTATAGCACCGGAAGC
CTGGTTAAATTAGGCCCATCACCTTCCACCCCCACGGCTTAAGATTGGTTTAGTACCATC
TCGCCAATTGGAGACGGCAGGCGCCGGGAGCCATCTATACAATGAGCTTTAGGTGCGACG
TTGCAACATACTTACCTGGACGGGGTCAACAGCCGATCAAGAAAGGTTGTGGCCTAGATT
AATGACTCACATTGCACTTGGTGAGTGCGTTGGTCTATCATCTCCCCAAGTGGGAGAGTG
GACGTCATAATTTGTGATAGAGGGGGTACGCGTCCGCGCGGCCCCTGCCAATTTTTTAAA
TTAAAATGTTCAAGTTTGATCCTCCTTGCTTCTAGTACCTTCGCCTTTTGGTCTTTGTAT
AAACCTGATCCTTTTGGTCTTTGTATAAACCTCATTTGCATGTGTAGGTTCCTGGTTCTG
TGCATAAACCAACTCGTTTAGATTGTGACGAGGCTTTTCTGTGTGATTAATTTGTTGGGA
CACTTAGGTTGGCCCTTTCAGCATCTTTCTGGGCTTTGGAACGTAGAAACACACAAAAAT
CACAGCAAATTAGATGAATTTCTACATAATTCAAGCTGTTGTCTAGACTCCTAGGGAAGT
TGAGGATTCAAGCGGGGGATCACACCACCGCTATCTCTTCATCCGAGGTAATTACCCTCT
CAAGCGAAAATGACACCCAGAAACTTAGTACCAGGATCACGAGAATATAATAGGGTTCCA
AAGTTTTACTCGATGCACTTGGAACATCACCATAATGTGGCACTTAACATGATGTGGCCT
TACAATTATTTCGGTAATCGAGAAGCATGGCGATGCAGCAGTATTCTATAGATCCATCAT
GAATCGCATTGCGCATCACTTGGCGCTAAGAACTTCGATCTCGAATATCAGCTCGGAGTT
TGGTTGAATTCCCCAGGCTGGAGAGCCACCAGATCCATAAGCGTAGTCTGGGGTGCACTG
CAACACAAACACTACAATATCAGATCCATAAGCATAATTTGCGGTGCACTGCAACTGATT
CATTTGGCAAACATTTTCTTAGGCATGGACATGATATGGCACTGGAAAGACTGATTAATC
CAAATTCAGCTGTTTAGACACACTTCTGCCATGGCAAGATGCATTTAAAAAAGCCGATGC
AATGGAAATTGACAGTAATAACCAAGTGCCAAATGAATCAGTGAAGATATTGCCACACAC
AAGCAACCATGCAAACACATCAAATTGATTGAACATGTCCCAAGAACACACCTTAAGACG
GGCGACTTCACCCAATTGCATGTCCATAACTCCCTCATCCCATCCTGTAAGTAAGCAAGT
AGTTACTGTTACATTAGCTCCGGAAGTTTACTTGCACAATCTAGTGTAGCATAATCTTCA
TGTATGGCATTATATGGACAAGTCGTCAAAATGCAGGCTGTACTTTATAAGAAAATAGTG
AAAACATGACTTAGTGATCTTATGACGTTAGCAGCATGAATCAAGGCTTTATAGGAGAAC
TTCACCAAGAGAAAATACAACGGGGGTACAAATGAAAGTAAATAACATAGACAGATAATG
CAAACGGTGCATGTTTGCAGTTATATCATGACTTTCATTACATACTCTATGGTCTCAAAC
TCTCAAGTGTGCAACACAAAGCTAAGAGCATTGAGCTTGTGCACGCATCATCAGCAATTC
AAACTAATTTTAAGGGAGAATATGCTATATTTAGTTGTAAAACAATGGAGACAGCTCGAA
ATTATTCCTTTGTGCAATCTTCTGACCGAGTAAGCAGCACACACTTTGATTATTACTGAA
CTAATAACATATGAGGCAATAACACCATCAATAACAGGTCAAATGATTGTGTATAAACTG
AATAGCTCTTTGATAATGAGATCACCTTTGATCACTGAACCCAGGCCAATGTTGAAAGCG
AATGGCTGCTGCCCAGGATCCTTGGTACTGAAAAAATGAGCATAATACCATCAGATAAAT
TCCCAAAATACGAAACTTTTTCTGCAAAGTTGCATCCAAGAGTTATGGTTTGCATAGTAG
CACAATCCTTCCCGATGGAAGATTTACACACAAAACACGGAAAGAGAAATGCTGCATTTG
CTCACAACGTTTACAGCTATGGCCTTCGAATCACGAAAAGAACAAGAAAAGTCACCATGA
TTTACCTCCAAAACTTCTTGGACAGATCACCGTCCTTGCCTGCAGGGGCAACGCAGCAAG
AAGCAAAAGTTAGCCAGCCCTCATACAACACAGAGTTACAACTTACAAGGTCTAAAATCC
ATCAAAAAAGGTGGCTAGAACTGAATCAAGGTAACACTTCACTGAATCCAGGCTATTCTA
CCAGAACCAAAATTTCAAATCTAGTGAAGACCCCCTTCGCAGAAGCGAAAGTCGACGCCG
AAACGATGCCAAGGTTGCCCTTTTGGATGGATCTGGAAGCATCGGGCGCTAAACCCTAAG
TTCGTCTCGATGGATCCAGGGAAAAGAAAGAACACGCGGAGGAGGGAAGGGGCGTACCGT
AGCCGGTGCAGTGGACGGTGACCTTCTGGCCCTTGACGGGCTTGGGGCCGGTGCCGGCTC
TCAGGATCTCCTTCTGGATTCCCATCTTCCCGTCCTCCGCGTCTCCTCTCCACAGTTCGG
CGGCGGCGCAGCGTTGGTGCGGTGGTCTCTGATCGGTGGTGGTGTGAGTGCGAGTGCGAC
CTACGGAGTATATTTCAGGATATATTCTTATCAACAAAGCTTTGCAACGTGCACACGGCT
TTTGCCCCCCAACAGTTTCCCCTTTATCCTTTTTCTCGTCCCAGAAAAGAAAAGCTGTAC
CCCCACCGATGCAAATTAATTGTCACAGCTAAGTTGGATTATATATTTTTGTCAAAAAAA
AGTTAGAGTATATATTTATTTGCAGATAAATAGTCATTTTGCTAACAAACAAAAATTATT
TTTGATGATTTTTTACCTTAAACTAGATAGTTGTCGGCAAGTTGGATCATGAGCGCATTT
TTTTTACTTCAACTAGATAGGTGTCTACGCATTTGAGCACAAATATTTTACACTCCCTCC
ATCCGAAATTAATTTTACAATAATGGATAAAAATAAATAAATATATATATAGAACTAAAA
TACATCTAAATACATTCAGTCCTCAGACAAATATTTTCGAATAAAGGGAGTGCATAATAG
CCACAATTTATATGCCATTTCATTGTTAAAGGTTATTATGTATAAATAATGGATTTTAAC
AGTAAATTTAAGGCATTTTTCTCTTTGGACCTTTCCCACAAGCGCCTCCAAGCCGACTAG
GGTTTTCTCGCCTTCCGCCGGCGTGCCGCATATGTACCTCGTCGCTTCTGCCCTTAGGGC
CATGGAGGCATGGTGGATGTTGACCCTTATATGCGGGAGGGCTTCTGCTTTATTTGTAGG
TGTATTTTACAGTTTGTTTAGAGTTCGTGTTCTGCTCAACAAAGCGAGGCGACGATAACT
TCATGTAGATGGAATAAGATTCTCCTTGCCTAACCTCCGCATTGGCGGTGCATCCAATGT
CGTCGAAGGGCGTGTGAAGACGGATATCACGGGATTCAGTCGTTGTTTGTCTTTGGTGGA
TCTCTTCAGCGATGACGGTTGTTGTTCTGGATAACTGATTCTTTGGGGCCTTGGCACGAG
GACTTTCCAATTGTGTAGTATAATACAAGAAGGTTTCCAGGCGTCGGTGAGGGAGGAGCC
ATGACAACCGTGCATCTTTGGTTCATTACAATGCTCGTTGCCATGGGTCTATGAACATGA
ATGTAATTTATTTAACTTCTGGTGTTCTCTGTACTGTCACGATGTTTGATGAATATATTG
AAAGTTTTTCCTCCAAAACAAAAGTTGAATGAGTAACTATTAAACACCAAAGAAAATGTG
ATGTATTTGATAAGTCAATAGGACTTGAACGGTTGAGATGGTTTAAAAATAAAATCAGAT
GTAAAAGTTTAGCAAAACCGAAAAAACGAAGCAGGTGGGAGGGGAAGGAAGGGCCAAATA
AAGACAAACATAACCTTATGTATTTTTCAATAAAAAATAAAGGATTTTTTTAAACCAAGG
ATAGTTTAAATTATTAAGGCCCTGTTTGGAACCATTCGTATTATATAATTCAGTTTTTAT
AAATATATTCTATCTTCAAACAAGACAGATTATGATGTAGATTATAAAAACTAGATGAAT
AGATTATTAAAAACTCACAATCTACTCTGCCCCAGCTAAAATCAGATTATAGATTGCTAA
TGATCCATTA