morexGenes - Barley RNA-seq Database

Contig contig_2547603
Source Contig contig_2547603
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_2547603 (7098 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location
Predicted Genes from contig_2547603

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_36988	1	184 bp	MLOC_36988.1	Available	Available	None
MLOC_36987	2	1359 bp	MLOC_36987.1	Available	Available	LOC_Os05g09480.1, FRAME:+1, EVALUE:4e-67, 13105.m01056 protein OsIAA16 - Auxin-responsive Aux/IAA gene family member, expressed
CDS Structure of MLOC_36988

CDS Structure of MLOC_36987

Contig Sequence (7098 bp)

>contig_2547603 7098 assembly3_WGSMorex_rbca.fasta
GGATTCATCATTGGACAGTGACCAGAGTCGACCACTGATTTTGTTGGGCGGAGACGATCC
CATTCCCACGCAGGGAAACATGTTGTCGTGGCGAGCTGATCCCCTCCCGGCCGCCGGGGA
AGGCCGGCAGGCAGGGCTGGCGGGAAACCTTGCACATTTTATAGGTGCCATTCATTTACT
AAGCATAAAAGTACTACTACTATTTCAATTTTAGAGTATTTAACTTGTTCTACAATATAC
ATTCATAATACAAGGAAAACTATTTAGGGAAATAGAAATAAAATTGCTGGACCATAACGA
ATTTGTGTAGTTTATACATATTTTGAATGGTTAGATAATTAGTTTGTGCATTCGCACGGG
TTGACGACTAGTATTACCTAATTAGGCTCAATGCTACATATTTCTGATCACATTATGTAC
AGGGGTAAAAAGGTCTTTTTACGTGTACAAAATGAACTAGAGTGTCATATAGGGAAAGAA
ATTAAGACTATAGGTCATATAGGGAAGAATTTATTTCCAGTGTCAAATAAGGAACACGAT
TTGAAGGGAGTGTCAAATAAGGAATTCTCTCATTAAAAAAGGCCGACCGCGGTCGCTGAC
GCGTGAACCCGACGATGGTGGCCGTCATAAATAATGTTGACCGCGGTGGTTAGGTGCAGA
CAGGGCGCGTATCCGCGATGGCGCATTGAAGTCTCAAATTTGAACCGAAAATAGATCGGC
GCGGACGTGAAGCGGACACGTTTTGGCAATGGATCGACGCATTGGACCATCAATTTTTTT
TTCCGTAATGGACGTAGCTGGATGAAATGGATCGTCGTTGCTCTTGTTTACTTACATGAA
CATGTTTTATTAACTTCTCAAACTTATATTTGATAAGAATTAAAGATGAGAGAGAGAGAG
AGAGAGGGGCACAGGGTTGTTGGCTGTCGTGCTTGGCTGGCTTTGCTTGCTGCGCCCTCC
TGCGTGAGCAGCGTAGATGCTTTCTCCCGTTGCCTTTCCCGGGCTCTGTCGGAGCCCTGG
AATCCCTCCCTGGCTTATTCCCGTCTCTGCACTGCACACCTACAGCTCCTTTACTGCATC
GCTAGAGAGAGGGGAAAAGGCAATGCATACAAGAGAGAGAGAGTAAGGCTGCCAGAATTT
TCAAAAGGTGATCTTACATGGAAGCATATGAAAAGATATGAAGACAGAAGGAGTTGGCGT
ATACTTCTCTCTCCTCCGCTACAGAGAGAGAGAGTGAGAGGGGTGGAGCAGGATCAACGG
GCATCGGGAGTGGAGATGGTAATCGAGTGCAGATAGTCTGTGGAGTAGAGAGAGAGCGGG
GAGGAGACCTAGAGAGAGAGTGGAAATGCAGTACTCCATCCTTGTCCCTTCTCCAAGCCT
CGGTTGGCCTTTGCGGTCTGTGCCTGCTTCTCGGGCACAGCACCAGCTTGTCCTCCCTCT
ATATATAGCTCCCCCATTTCCTGCTGCTTCAGACTCATAAAGAGAGAAAGAGAGAGAGCT
GGCTCCTGTGACTTGTGAGGCTCGTGTGATTTGTGAGGCTGTTCCTAGTAACCAGTTCCT
TCAAAGGAGGGTTGAAGGAGAGAGAGGGAGAGGGAGAGGGAGAGAGATGGCTTGGAAGGG
GTCGAGGGACGAGGAAGAGAGGGGGCTTGAGCTGAGCCTCGGCCTGCCTGGCTACTTCTC
CGGATCACCAGGCCAAGAAGGTAGCTCCTGTGCCACGCATGCTTGTTTCTTGCTCCTTAA
TTCTTCTTCTTCCTTCAAAGCTTCATGCTTTGTCTGTTGCTGTTTGTTTCAGGCTTGGAG
GAGAAGGGAGGCCGCCGTGGAGCTGCTGGTACTGGAGCTGGAGCAAAGGGAAGAAGCAAC
GGCACCAAGCCAAGGTTTTTGTTCCTCCAATCTGTTGAAGTGAATATGAGATTTTACCTT
GCTGTTCCTTGTGCTTGTCGGACCAATTTTACCTTCTTCCAAGAAACTGTTCTTGCCACT
AACAGCAGCTCTAAAATTGATCTGTTAGAACTAGTGGAGACGGCAATGTGTGGAAGTGGA
ACATAATTAAAGATTTTACTGATCCATGTTCTACTTGTCTCTGAAACGTGCAGCAGGCCG
TCGGCCGCCGCTCCGGTCGTCGGGTGGCCTCCTGTACGTTCCTTCCGGCGGAACCTCGCC
TCCTCCTCGTCCAAACCGCCGCCCGCCGAGCTACGCCATGGTGCCGGCGGCAAGGCTGAT
GGCTGCATCTACAAGGGCCAATTCGTGAAGATCAACATGGACGGCATCCCCATCGGCCGG
AAGGTGGACCTTAAGGCGCACGACAGCTACGGCAAGCTCGCCGCCGCCGTCGACCACCTC
TTCGAGGGCCTCCTCGCCGGTACGTACACACGCAAATCGGCACTTCCATGAGCAAAACTG
CATGCGTGCGTGCGCTTTGGTCGATCGTTGCTTAACTTTGCTCTGTCCACTCTGCTCGCG
CCGCAGCTCAAAGGGACGAGAGCTCCTGCGCGGGGGAGAAGCCTGCGGCGATAACAGGGC
TGCTCGACGGCAGCGGTGAGTACACTCTGGTGTACGAGGACGACGAGGGCGACCAGATGC
TGGTTGGAGACGTCCCATGGGAGTGAGTTCGATTCGATCTTCCCCTTAAAACAAACAAAT
TTCTCCCCTTGTTTCGAGCGAAACGTGACCCGTTCTGAACTCACCGGCGACGATCTCTTG
CCGTTGTTACAGCATGTTCATCGCCACCGCGAAGAGGCTGCGCGTGCTGCGGAGCTCGGA
TCTCAACGCGTCCTCGGTCAGTACAGCTGGAAACGCTGATGCTTTCTCCACATATTTCAA
GCTGATTGACCCTTGCTTATTACTGTTCCTTCTTGTTGGCAGCTACGAGCGGCGGTGAGC
CGGAAGAGGGGAGCGGCCGAGTGCTGAGCCATTTATCTAGGGAGAAATACATGTTGCTCT
CGATCGGAATGTTTTCTATCCTTTTTGCACTCTTCTTGGAGCTAGCTACTTTCTGCTATC
GATCTGTATAAATTTCCCAGATCTCTTGGCTATCATCATGTCATGTTGCTATCATCGAGC
AGGCCTGGCTTCTACTGTTAGGATCATGTATCTAGTGCAGTGTCGTAACTCGTAAGGTGT
TGATTTTTGGAACGGCGCAGGAATGCTAAGTTTGGCTTTTATCGACCACTGTTCCTGCCT
CTGTGAAGGGGAATCTTGGTCAGTGCCCATGTACAGCGATGTTGCTTGCTGAACTGGGTT
ATCATGAATGCTAGCGCCATAGTTTATCGTGATGCCTGCACCCACAGTTCCGGGCATGTT
TTGGGCCAGCGAGCAACGAGCTCACGGATGTGGATCCCTGAGCCAAAATGTTTTTGAAAT
TCAAACTATTAACAACAACTTCAACGGGCGAACCAAACGGTTTTTGTCTGTTTTTTATTC
ATTTGGTCGTCTGTCCGTGTTCGTTTTTGTAATAAGTCGGTACATGCATTCAACGGAAAG
CAAATGGTTAGCAACATTGTGGTATTAAAATAATAAAACGGAAATCAAGTGGGTAGCAAC
GCTGTGGTATTAAAATAATAAAAAGATGTGATGAGTGGATCAGTCAATTAAATAAGCACA
CACATGTGGGTGGATGACTATGTGACAAGTAGGCCATGCCAGTCTCATGCGGACACCGGG
AGGACGTTTGGATCCGCGCCGACGCATTTCAGTCCTAAATTTAAGCCTGAAATGGATCAG
AGCGGACACATTTTGACAATGGATCCGCGCGTTGGACCATCATTTTTTATTCGCTTGGAC
CCAAACGGACGACGGCAGACGAAGTGAGTCGACCCGTTGAAGTTGCTCTAAGAGCATCTA
TAACCGGACACCCCAAACAACCCTTCATACATTCGCGGACATGTCCGGTCAATAACCGGA
TAAAAGAGAAAGAAAAAACTTAACCATACCCTCATGTTATCCCTATACATCCAGGTTGCC
CGTGAACACTCATATCTAACTCAAATATAGAAAGGATAAGAGGGCTTATCATGTAGAACG
CGACCCCATACAGGACCACATCTTATTTTTCTTTGTTCATTTTCCTCTTTCTTCCTCTCA
TTAATCATGTGCAAGTGATTGTACATATGAGGAAGAAAATGAAAAATATGGTTGCGCGGA
CGGACAAATAAAGAACACGTTCGATCGCTGACCGGACGTGTCCGCACACGTGTAAGGGAT
CATATTTGTTATATTTGGTTGTAGATGTTTCAAGTATGGATATTTTCATCCATGGTAAAG
GAAATCAATACTGAGAGTATGGATTTTATATGACTCATTCTACAATTATTTTATAGGGAT
CGGAAGGATTGAAACTATACAGGAATTCCTCGTATACTAATACATTTGGCGCTATAGGAA
TGGACTAGTTTCACCCGAAAAAGGAAGAAGAGAATGGACTAGTTTCCTATGAATGAATTC
CCTTTTCTTCAAATTATAGAGGATAAATGATAGGCTTGTGTAACATGATGTATGCCATGC
TAATATAATCGTGTGTGTTCAGTTGTAAACCGGCAGGAGGTTTTTAGACATGATTCTTAT
CTTGTATAGTTTGGAGTAGGGGTTAAACTAGATAACCATGTGCTTATGATGTAATCTTGA
TCTCTATATAACACCCACGCGTCCCTACCAGGAGGTATATGCTTAACTCATTTTCTTTTA
AGGTAATTAGAGCCTACCTCAGGTACATCCATGGCGAGTTCCTCCACAAATTCCTTCCCC
TCATCTCCGTTTGCACACAATGCAACAGAGAAGCAGGGAAATAAGCTCTATGGCGTGCTA
CTGTCCTCTCCGCCATTAGAGGAGCGCAGATGGCGAACTTCCTCGACGTCGATCAGGCGG
TTCCACCCATGACCATTGAGGTCACGACCGACGACGACAAAAGCAAGACCAAGGCCCCGA
ACCCAGAGTTTGGTGTGTGGTATGAGCGAGATCAGCGGGTTTTCTCGTACATGCTGACCA
TGTTGCCGCACGAGATAGCCGTCCAAGTGGCAACTTGCCACACCGCAGCGGAGCTGTGGA
ACACCGTGCAAGGGGTGCTTCAATCGCAGACCCGAGCACAAACTGTCACCGTCAGAATTG
CCCTCGCCAACCTTCAATAGGGCAACTCCACCATCATCGAGTATGTTGGTAAGATCCGAA
CTCTCTGTGATGAACTAATTGCTTCAGGAAAGAACATGGATGAGGATTGTGAGCTCTCAC
ATCCTTGGCGGACTCGTTGAGGAATATGATCTGGTGGTGTTGGCCATGTGCTCCCGGGTC
GAACCTGTCAAGATCCCGGAGTTGTACTCACAACTCTTGAGCTTTGAGACCCGTCTGAAT
CCTCGCGGCGGGTCATCTTAGTCTTCTGCAATTGCGGTGGTGCGTGGTCGTTGCTGTAAC
AATGGCAGCGGCAATGGAGACCGTGGCCGCGGTCGTGGCAATGATTGTGGTCGCAGTCGC
GGCAACATGGGAGGACACGGCAATGGCAGTGGGAACTACAACAACAATCCCTCTGCCAGG
CCGATGTGCCAGATCTGTGGCAAACCCAGCCACCCTGCATGGAAGTGCTGGAAACGCTAC
GACTCCTCATATCAAGGGGCGAGGAGCGTTCGGCGAACATGGCTGCTCCTTGGTATGGCG
TTGACACCAACTGGTACATGGACAGTGGTGCAACCGACCATATCACCAACGACCTGGAGA
AGCTAACTGTCGAGGAGAGGTACACCGGCAACGAGAAAATCCATACTACAAACGGGTTAG
GTATGTTTATTGATCATATTGGTCATACAACTATTTCTACCCCGGATCGTGATCTCCATC
TAAACAATGTTCTTCATGTTCCAGAGCCAACCAAAGATTTGATTTCCGCAAGTAAGCTTT
CTCTTGATAATGATACTATCGTTGAGATTCACCCTCATTTTTTTCTCATCAAGGATCTGG
AAACGAGGAGGGTTCTTCTTCGAGGCAAGGGTAGAGGAGAGGAGGCCTCTACCCTGTCAA
ACACACCGGGGGAAACGTCTAGAAGCAAGTGCTCAATGTCACCAAACCTTCAATAGATTG
GTGGCACCGACGTTTAGGTCATCCTTCTTCCATTGTTGTTAGGAAGATGCTTAGTGAGAA
TAAACTCCCGTGTGTCAATAATGATGACAATAAGATTGTATGTGGCGCCTGTCAGAAAGG
CAGAAGTCACCAATTACCTTATCCTCAATCTTTGAGTGAATCAAACTTTCGTTTATAACT
TATTTTCTCTGATGTATGGGGCCCTGCTGTTGAAACAATAGGTAGAAAAAAAATACTATG
TGAGTTTCATAGATGATTTCAGTAAATTCACCTAGATTTACCTCATCAAACACAAATCTA
AAGTCTTTCAGAAGTTTCATGATTTTCAAAATCTCGTAGAATGACCCTCCGATCGAAAAA
TTCTTGCTCTTCAAACTGATTGGGAAGGGGAATATGAAAAATTGAACTCCTTCTTTACCA
GAATTGACATCTCTCATCATGTCTCATGCCCTCATGCTCATCAGCAAAATGGGTCACCTG
AGTGCAAACATCGTCATATTGTTGAAGTTGGGCTCTCTCTGCCTGCTCAAGCCTCCATGC
CCTTGAAGTTTTGGGATGAGGCATTTATCGCTGACACCTACTTAATCCATAGGATGCCAA
GTAAAGTTATAAGCATGGAACTTCACTCACTAGATTATTTGGTGAGACTCCTGATTATTC
CTCTCTTCGAGTGTTTGGATGTGCTTGTTGGCCTAACCTGCGTCGATACAATAACCACGA
ACTGCAGTTTCATTCCAAGGAGTGTGCTTTCCTTGGATATAGTAATCTACACAAAGGCTA
CAAGTGCCATGATATCTTCACAAGGCATGTCTATATTTCCACGGATGTAGTGTTTGATGA
ACATGTTTTTCCCTTCTCCACGGTGACGCCCTCGGTTTAATTGTACGCNNNNNNNNNNNN
NNNNNNNNNACGATCAAACTCAAGGACTCACGAAAAGATATCACAACACAACTCTAGACA
CACAAAAAAACATACAAGCTTCATATTACAAGCTAGGGGCCTCGAGGGCTAGAAAACAGA
AGCTCGATAAACACACGA