morexGenes - Barley RNA-seq Database

Contig contig_2547484
Source Contig contig_2547484
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_2547484 (8687 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_2547484

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_36912	2	3522 bp	MLOC_36912.1	Available	Available	None
MLOC_36915	1	571 bp	None	Available	Available	LOC_Os12g35900.1, FRAME:-2, EVALUE:2e-26, 13112.m03680 protein transposon protein, putative, Pong sub-class
MLOC_36913	1	1953 bp	None	Available	Available	None
MLOC_36914	2	684 bp	MLOC_36914.1	Available	Available	None
CDS Structure of MLOC_36912

CDS Structure of MLOC_36915

CDS Structure of MLOC_36913

CDS Structure of MLOC_36914

Contig Sequence (8687 bp)

>contig_2547484 8687 assembly3_WGSMorex_rbca.fasta
GGAGACGGAGGGCGCGGCCCGGCCGCGGCGGGGGTTGCGGGAGGGTAAGGGGTCACAGGA
ACACTCTGCACAGGAACCTTTTCCTCACAGCTCATACACCCTCTGTTCTAATTGAACTGC
AAAAATGTCTTACATTTATGAATGGAGGTAGTACGCGTTACTGCTTTGAAGAAAATTGCT
TTGGCGATGCAGGCATGGAAACAAGGTTCTGAACCTACGATCTGTACAATCTCAAAACCA
CTGCCTTGCCTGTAAGCATCTACAGATGGTTTTAGTATCTTCACAAAGCTTACGACATTT
GCATCCTGAATGACCAGCAGATTTCATGTTCAGTTGAAAGAACAGGCAAAACAACCAAAT
TCTGATTGGTTTCATGAAACTGGATCCTAGCAGGGTTTTTTGAGCCAGCCTCTCGTTGTG
AGTGGGGCTCAAAAGTAGAACTGTAGAATGACAACTGCTGAATCAATCGTTCAGCTATTA
TTGTTCCAAGATGATTGGTTTTATAATAGTAGGGCAAGTTAGCACATATTGTTAAGAGTT
ATTTTCCTCTACTTGAGTGTTGAAGAATGACTAAAGAGTTTGTGCTGGATTAGGCTCAGT
TTGTGGTTGCTGAACTGTGCTTATTTTATAATCTGATGTTGAAAATTAGCCACAAAAATA
GGCACAAGCAGGTCAAACAAACACTAAAATTGGCAAAATTGGGTGGACCAAACATGATTA
TGATAATCAACCACATTGTCAAATGCAGCCTTACACTTTGGTAAGTCTGGAACGTGTAGG
CAGGAAGCTGTGTGAAATTGTTTGTCAAAGCCCAGAAGCCAGTATACCTCCATACTTTTT
TTTGAAACAATGGGAAGAGTTCTATCTAAAAGGGAAATGGAAGACAATAGTGTTGATATT
TAGGCCTATAGGTTTGAGGTCAAAGCCCAGAAGCCAGTATACCTCCATACTTTTTTTTGA
AACAATGGGAAGAGTTCTATCTAAAAGGGAAATGGAAGACAATAGTGTTGATATTTTTTT
GATAATACTGCATAACAGTATTACGAGTAAATTTTGCAGGCCTATAGGTTTGAGGACAAA
CTGTCCCAAAACTATTGATTTTAGGGTTTCCTGGATCTCCACTTTGTTTGTAGACCTGGC
TCCATGTACCATATGGTGTGACCTGGGTGGAGACTTCGGTGCACAGCACACTAATCTGTA
GCTTGTGATACAGTTGATCAGTAAACCTGTAGTTCTATGAAACTTGATATTTATATAAGT
TTGTTGGATTTTACTTTTAACAATGGTGTGCCAGACTATACATGAAAACATAGCTACTTT
GATTTACAGATGCACTACCTACTTCCTGTTAAAGTGGTTATGTGCTGATTAAAACATGCA
AGTATATATTGATAGGATTTGATCTATATTCAGTAAATGTCTGCAGCTCAATTGCTGATA
TATTTTTCTGCACCTGCCGCCACAATCTTCTGTGTCTTCCTCAACCGACCTGACCAGTTG
ATACCCCATTTTAGCTGGTAGTGTATGTTTGTAAGGGGAATGTGAATCTACCATTCGATA
TGTGCTGTCACTCTTTGTCTCTTTGCTTAAAATCAGCACACTGTTCTAAATTGCTTATAC
TTAACGACTTTTCCTGTGGTGCTACATTTCCTTCTGTTAGGAGAGACAAGGCTATCGGAT
GATGAAGAATGAAGAGATTTCCATGTTCATGTGTATAAGCTGCAGACATTTACTGAAGAA
TTTCAGTGTAAAACTTTGAAGGTAATTCTGTCAGATCTTTTTCTTTTGCTTTCAGTATCA
AATGGAAAGTGTCAATATAAATGGTATGGACTTGTAATTTGTCATGGAACCTCGTTTTGT
TAAATTTATAAATAAAGAGTCATGGTTGTCTCAATTGTTGCATTGTTTATTTAAAACGTT
ACTCGCCAAAATATATAAGCTGTGCTACGGACCAAGCTTTTGGCAAGTTGATGAAAGGTC
AACACATTAGCTGGGCCATTTTGTTGTAAATTGTAAATAGTAAGTATTCTTCCATGTGAT
TTGAGTCCGTTGCAGGTCACTGATTATATGAGCCAATCATGTAATCACTTATCCATCATT
ATCCTAGGCTAGGTCCCACAATTGTGATACCTCCTGCTGGGTTCAAGTTATTAACTTGCA
GATATATCTATCCAAGCTTCGGTTTTGATGAACGATCATTCTTGCATGAAGCTAAGAGGC
CACATTTTCGTTACTGTTCTTTTTCTTCATGTGTCCTGTAACACTTTGACGTTAAACCCA
CTGATTAATAAGGAAGCTGCACTAAGCACTAATGATTGATGCAGAAATCCCATTCAAATC
ACTCTAATCTTATGGCTGGGGTAGGTAACATGTCTTATAATACCCCGTCTGAAAGTGCAT
CAGCACAAGGTCATGCTGCCATGGATGGTCAAATCTGTGTGATCTGATTTTACTTTCCGT
TTTCTAAAAGGAAGATATTTAGCTTTCCTTATGCCTTACATTTTAGACTGAGCTGACATC
AAAGGGACCAGTTATGGAATACATGTAAGCACTTTCATTTTCTTTCAACTTCAACCTTCA
AATCTTCCGACAAAAAGAGTACTCATAGTAGGTAAGATAAAATCTCGAGGTGATTGGTCA
GTTTGTTCTTTCTCGTAGGCCTGAATTAGTCGTCAGCTGTCACAGTTCTGCACAGAGTAG
TGGCAGCCATCATTGAGATGGTGTCCACTAGCCGTTTTGCAGTCCTGAAAGACATGAAGC
ATAACTTGGGCCAGCTTCAACCACACTGGGACGCTTCATTCGTTGGATCCCATGATTTAG
TATCAATATCTTTGTTGAATACACACAACACATCACTTTTGGCCTTGCCAATTTTATTTT
GTGTGAAATTATTGAGTCCTTTTCAATGGTGTTAGTGGATATGCCCCCATTATCAAGAAC
AGCGCCGCACACTGTAACACTTCACCGTGTTTAAAAAATGTTCCAACCGTCTCCGCATTA
TTTTGTCTTCTCATGACTATATCTTGCTACTGACTATTCTATGTATGGTACTGGGTTGTG
AGTTGTGACACACACATATGTTATTGCCAGCATTGCAGTGTTATATGCTTGAAGAGTTGT
CTTGGATACTGTGTTTTTCTAGCGTTTGAAACTTAGGAGGGTGGGTTTGTATAGTTGAGG
GACCAAACAGAATGAAATATCATGGTTCCATTTAAGTGAAATGGGTTGGTTCTGTTCTTG
CTTTGGTTGGAAATCAAAAAGTAACATAATGGTTCCGTCCTTAATTTGGTTGAAGGTATT
AATACGAGGAATTTGATTCAGCTCACTTCTTCCGTAGGAACGGTGAGATTACTTCCCATA
TGCCTATGTATAAATCAGCAGGAAGTTGTAGACAGTCTTCTTTATTTTCTCCGTATTTGT
AGCATCTTTTTTCACAAAAAAACACAAATTGTAGCAATTTTTGTGAACTCATCGGTTGAA
GTCTCCAACATATTTGAAATGATGTATCCATTAGCTACTATAAGAATGATTTCTGTGATC
TGCTTTGTACTCCCTTTGTTCCTAAATATTAGACCTTTTAAACACTATAGACTACATACA
CATGCATATAGACATATTTGAGAGTGTAGATTCACTCATTTCGTCCAGTATGTAGCAAAA
TCTCTAGAAGGTCTTAGGATACAATTTGAAAAGAAACTTCCCATTGAGTCCAAACCTCAT
ACTCTCTCCATTCCCATGAATAAGACGTGCACTCATTTCAAAATTCAACTTTGATCATCA
GTCCGACAAACTAAATATGGATTGTGCGTGACAAAGATTATATCTCGGATTCGTATTCGT
ATTCAAAAGAAGTTTTCAATGATAGTATGACTTTTAAGTCTCGTAACTTATATAGCATTT
GTCCAATTCGCAGTTGAAGTTGAATGTTGGAATGCATGCATGCTTTATTCATTGGAAAGG
AAGTTGTATGAAACTTAGAGCATCTATAGCCGGACTGGGTAAATCTGTCCCCTTATATGT
TCGTGGACTCGTTTGGGCATGTCCGTGGACGCATTCGGATGGCCCCTTATATTTCGTTCC
CTGTATCCACATATAACATATATGATATATGTACTCTTAAATCCATGCAACATCATGCAT
GTTGGTTACACAAATCATCATCGCATGTAAAGTGTTGGTACTGAATCTAAATAGTGTTTA
CATAAAATTTATTTGAAGTGCACAATCAATTATTCGCTCTTTGGTTGCACTATGGGTTCA
CATATGCTTTACCAAATCATTGAGTATCTGTGCGTGCACCTGATGATCTTGGAGATTCTG
ATGCATATGCAGAAAGTTCATAAAATGAGCTGCATCTTGATCTTTTGGGATTTTAACTTC
TTCAGGTACTTTGAAATTATTGATTTGGGCTACACCATCATCCTTATCCTCGATGATCAT
ATTGTGGAAAATAACTCAACATGTCATGAGCCATCATAAAGTTTTTGATTTCTACATCAT
TGGAGCCATACGAACAATTCTTCAACGAGCTTACCATTCTGAATGCCCTCTCCACATCCT
TTTCTAGCTACTTCCTGCATTGATGCAAAGTGATTTTGTTTCTTGCCCCTTGGTTTGAAC
ATTATGTTTACAAACGCAACACACTAAGGATAGATGCCATCGGCAAGATAGTATCCCATG
TTATAGTCTTGGCCGTTGATGGTGTAGTTGCACGGCAGTGATTTCCCATTGCAAAGCCTT
CTGAACACCGGAGATCATTGAAGCATGTTGATGTCGTTGTGAGAACCCGACATCCAAAGA
AAGCATACGAAATCCAAGCCATGTGATGTCACCGCTTCTAGTATAATGGTGGCCTCTTTG
GTGTGACCTTGATACATTCCACACAAACCTTTGGGGTAGTTCTTTCGTTGCCAAAGGATG
CAATCAATTAATCCGAGCATTCCTAAAAACCCACTGACCACATCCATAGCCAACAACTTT
TCCGTGTCTTGCACTTCTACTTGACAGAGAAAGAGATTTGACCTCATCAATCCCTTGTGA
GCTTGAAGTAGTCATTGTGTGCCTTCACTTCGTCCACAATGAGCAAAAACAATGGGTTTC
ACGTACGAAAACTGTGACGAAACCATGGATCATCCAGAAAAGTTGGGTTTGAAACAAAGT
AGTCCCTCTGTAGTAGCTTTGCTTCGAATATTCTATCTCGATTGATCACTATTCTCTCTT
TGACTAAGCCCTTGCTCTTGCATGCTCATAAGCATGATCATGTTCACTTCTTCGTCCAAA
TACGACGAATCGAAGAACTGACCTTCAATCATTTGATCAAGCTTCACTGGTCCATACTCC
TCGTTGGATGAAGCATCGTAATCCATCGTTTTTCCTAAAAAAATCACAAAAAATCCGATC
AAACAATATGTCGAACACATCAGCCCAAGGCAAAGCTAGAGAGTTGCTGGATGTACCGTG
ATGGCTTCCGGGCCGGCGATGACGTCCGCCACGACGAGGGCGGGACACATGACTGCTCTG
TCGAAGCAGAGGCTAGGAACGGCTGCGGAGCACGCGCGACAGCGGAGCTGCGAGACAGAC
GGTGTGGAGCAGGAAGTAGAGAGGAAAGAGCAAATGGATCTGATAGTTTCGCAGGATGAA
TTTGATGCAATTTGCAGTGGGGTTGGGCTTTTAGGTCCAACGTGGCGGACGTGCCTGGAT
GCATATGGTAGTCCCTATATCCGTCACATAGTCAGGCTGTATATGAGGGGTGTCGGTTAG
CCCGGTCGTTTGAGGTGTCCGGTTGAGTTGAAATTTCATGACCGGATAGTAACCGGGAGT
ATGAGGCGATTTTGGAGCGTGGGCTGTAGACGCTCTTACTCTATTTTTAACGTGGTACGG
TGAAACACCATTTTCATGTTTCTAGAATCCCGTGAACCAAAGAGGGCGATCACACTCTAC
ATTCCCTTTACTACTTGGAAGTCATTTTGAAATCTGGCCACCCGGCCTGGATATGCCAAT
ACAATGAGAATAATAAGCCAGGGTCCCTGTCCAATAAGAATGCAAAGAGAAGGTGCTGAA
GCCTCGAGTAGTCGAGTCCTAGCACCAGTAAAGCCCTTGGACCGTTTGCCCCTCGTCGTC
CACTGCGCTGCCGGCCGAGAGCCGGGCAACGAGACTGCTCCGATCCTCACGCGACTGCTC
TCATCTGGTGGCTGCCTCTCGTCTCGATCGCCGCGCTCCCATGCGTGCGCTGCCCGTGGC
CTCGTCACGTACGTCCACGGCACGCACAGCGGCGCGTCCATCGGCATCGGCCGTGGCCTG
CTTCACGGACGCTTCCCCCTCGTCCGTGGTGGCGCCGCTGTTGCGTGAAAGTCTGAAAGA
CATATAGCAGGAAGATGCCACCGTCGTACCGTACGTGCTGATGGAAGAAACGGATGAAAG
AGGCGCGGGGACGCAACGCAATGCGTGCAGTAACAGTGCATGATATCGCCATATCGGGCC
CGCCGCCTTGCCTGCCTACAAGCTGGCCGGCCGCGTCGTTTCCCGGCCACCGGGGCGTTG
TCGCCGTGCGCTTGTCGGGCTCCCGGCGGCCCGTACCGCCCTGTCGTCCGGGAAGAAGCC
GCCACCGGCTCCCTCGATCCGGCCGCGCGCAATGGACGCCGCGCCCACCCCGTACGACCA
CCAGGGCGCGATCATGGCCGGGACGAGGTCGCATCAACCAAGACCCCGTCGGCGTCACGG
ATATCACCGGCGCGAGACGCCGAGCGCGTCGTGACGGCGCATCGCGTCAGGCCACTGCCG
CGCAACATGGCGGCCGATGATCGATCCCGTGGCTTTCCGCGCTGCGCCGACGGCGGGCCA
GCGGGTACGTGGAACCAACCAGACCAACCAGCAGAAGCTTCTCCGATCGAGATGCCGCAG
TGCGGTGCGTTCATCTGTGCATGCATGGCCGCTGGTCGCTACAACCCGCCTAGCTATATG
TAGAGGAGACAGCGACTCGGGTGGCGCGACCGGCTAGCCGGACAGGGACTAGCCTAGCTC
GTGCTTCGTTTCTTTGTGCCGAGCAGGTTTCTAGGCAAGACGGGCCGGTGTCAGATGCCA
GCAGCGCGTGTCCATGCCTGGATGTTGGGACTGCTCTCTCTCTCTGTGTTGGGACTGCTC
TCTCTCTCAACTGGACGAAGGAAGAAGAGGAACGAGCTGAACACGCGGTAGTTTCCGGCT
GCGCGTACAGCCTTTGATCTCAGCTCATACTGATTCACCCAGGTACAAACTCAGAGTACA
GTCGCTTTTGTAGCTCTTGAAAACGCAGCGCACACGAGCAATGCTACATCTACGTAAATG
TTTACGTACGTTTACGTAATAGTCTGACTTGACAATAACTGATTGGATTAAGAGAAGGAT
GAAGCCCACCCATCCTTAAAAATCAGGAAGGCATGTTTAAATTAGTTGGAAGGTTTAGTA
AACTTGTTATATAGGCTTTAATAAGTCTAGCATTTTTACAGCGCACACTGCCCCATCGGC
CACTAACCGCACGACGCACGACCCGTAGAAGTGTTCTACTATCACTGTCCATGCATGCAA
ACCAGCACGGAGCTCCACATGACTCGACCAAAAATAACTACGCACATAACTAACTACGGC
GCCAACTGACTGCGACTTACACTCGATCACGGACGTAGCCGCGCACTGGCGTCCGGTCTA
TACCTACACATACCCACATGACCGTGACCTAGCCCGCAGATCCGACCCAACGCACCGACG
TCGGTCGCACCGTTACGGACCCGACCTGACGCATCAACGCCGGTCGCACCGCGCTCCGTC
ACGACTTATTCCCAACACTGGAAGCTCCGTCCCGGCCGCCATGCGCAGACAGACTGCCTG
TGTCCTCACTGTAGCTACAGTGTGATGGTGCTGGCAGGGTGGAAGTTGACAAGAGAAAAC
TGGCAGTTGCTCGACATGGAAGCGTGCGCGCATTGCCCCGGGACGCTATCAGTGAGCGAT
CATGGACGATGTGTATCCAGTTGCATGCATGTGATATGTTAATTCTATCTGTTGAGATCG
TGTGCGAGTCACCATCAGGCCCGTCTCAATGCACGGTGCCTAGAGGCTAGAGCAAATGCT
TGTGCGTCAGGGATGGAGATATACATAGAGTTTTCTATTATCTGTGGCCTCTTAGTTATA
GTTACCCTGGAGGGGAACTTTGAAACCTGGGTGTATATACAATAAACTTGATCTTTCATT
ATACTTGTAAGAAGAAAATCATAATTTTTTATACTTTGACTTCTTCTAAAAAAAGTCAAA
ATTTTGATCAAAATAGTGTGAACAGTGACTTACACTAGTAATAAAACAGGGTTATAGTCC
TGATTGGGAAGGACCTTTAGTCCCGGTTCATCAGCGGGGACTAATAATTAAAGACTAAAG
CCTCCCCTTTTTTAGTCCTGATTGAACACGAACCGGGACCAAAAGTTCCACCACGTGGCA
AATAACGAGCGTCGGAGGGTGGGGACCTTTAGTCTTGGTTGGTGTCACCAACCGGGACTA
GGACTTTAGGGGTTTAGGGATTTAGGCTTTTTGGGTTTATGTTTTTTTTTTCATTTTGTG
TTTTCCATTTCTAACCTATTTTACGATACCACACCCACACACACACACACACANNNNNNN
NNNCACACACACACACACACATACAAACAAACACACTAACAAAAAAA