| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
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Predicted Genes from contig_2547429
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_36869 |
1 |
3192 bp |
None |
Available |
Available |
LOC_Os10g04074.1, FRAME:+2, EVALUE:2e-139, 13110.m00327 protein retrotransposon protein, putative, unclassified, expressed |
| MLOC_36870 |
3 |
750 bp |
MLOC_36870.2 |
Available |
Available |
LOC_Os08g30710.1, FRAME:-1, EVALUE:1e-19, 13108.m03178 protein retrotransposon protein, putative, unclassified |
CDS Structure of MLOC_36869
CDS Structure of MLOC_36870
Contig Sequence (7599 bp)
>contig_2547429 7599 assembly3_WGSMorex_rbca.fasta
GGAGCCGGGGCAGCGGCGTGGAACTGATGAGATGGGGTGGCGGCGACTGGCGCACGAGAT
GGGGTGGCGGCGGCTGGCGCACAAGAAGAGCTATCGTGTGTATGATCCAACCAGCAAAAA
GGTAAAGTAACACGTGATGTTTTATTTAAGGAGAGCAGGCCTTGGAACTGGAGTGCCCAG
GATGCGGTCACTACGCCCACACCGACGATATTCACTGTGGTCTACACCATTGACCATGGT
GTACATGAGCTGGATACGGGCGGCTCGCCCGCGTCTACACCAAGGAGCGCGGTGCCACCA
CCCTCTACACCACCAATGGGATCGCCGCTGAACTCCGCCGACATGCCGACCCAGTCGGCG
GTCGGCATGCCGCAGACCGAGCCACGCACACCTGCGCTGATGCGAGAAATGCGCTGGGCT
ACGCCGCCCACACATGATGATGTGCGACGCTGACTCCGGACCTATACGGTGCTGGCGCTT
GTCGTGCGTCTTCGACGAGACTGAAGATGAGGCCGTCTGAGAAGAGCTCGAGCGCTGCCT
GCTCACGATGGAGGAGCTGCGCAGCATCACGAAGGCTCTGAACGACGGAGCCTGGAAGGC
TGCGATGGACACGGAGATGGCATCTATTGGCGAAAATAACACGTGGGAGCACGCCTACTT
GCTGGCTGGTCACAAAGCCATCGGTTTGAAGTGGGTGTATCGTGTGAAGCGTGACCCAGA
TGGCAGCATAGTCAAGTACAAGGCTCGCTTAGTGGCGAAAGGCTATGTGGAACGAGAAGC
GTGGACAACGAGGAAGTTTTTGCGCCAGTGGCATAGATGGAGACCGTACGGCTGCTTCTC
GCGCTCACCGCGCACTCCGGCTGGGAGGTGCACCATATGGATGTAAAATCCGCATTTCTC
AACGATGACCTCGTCGAGGAAGTGTATGTGGCGCAGCCGCCAGGGTACGTCACCGCCGGC
AAGGAGGAGCAAGTTTTGCGGCTTCGGAAAGCACTCTATGGGCTTCGGAAAGCACTCTAT
GGGCTGCGGCAAGCTTCAAGGGCCTGGTACGCGAAGCTGGACAAGACTCTGGGCACGTTG
GGGTTCACGCGCAGTCCATTGAAGCCTGCCGTGTATCGCTGCGGGAATGCACACTCCTTT
CTGCTAGTGGGAGTGTATGTTGATGACCTCATCATCACCGGCACCTATGAGGCATCCATC
AAGAGTTTAAAGGGCAGATGCAAGAGCTGTTTAAAATGACAGATCTCGGCCTGCTGAGCT
ACCGCTTGGGCACTGAGGTAATCCAATCCAAAGATTCAATTACACTGTCAAAAAAGCTAT
GCAGAGAAGGTGTTGGAAGTGGCTGGGATGACCGGGTGCGATGGCTGCCAAACTCTCATG
GAGTGCCGGCTCAAGCTCTGGAAAGATGATGAGGCAAAATCTGCTGATCCTTCATTGTAT
CGTAGTGCTATTGACAGCCTAAGATACTTGGTTCATACCAGGCCGGACATCACTCACACG
GTCGGGATAGTAAGCAGGTTTATGGAGAAGCCCACCGTTACTCACTGGACAGCCGTGTAG
CAAATTCTTCGGTATGTGAGAAGTACATTGAGCTGTGGCTGTTGCTACCCGCGGGGATCC
GGCAAGGCTCAACTTGTCGGATTCAATGACAGTGATCACGCCGGAGAAGTCGGAGATCGC
AAGAGCACTTCGAGTCGGATCTTCTTTCTTGGTGAGAACCCTGTGTCATGGACCTCTCAG
AACCAAAAGATTGTGGCTATCAGTTCTTGTGAGGCGGAGTACGTGGCAGCAGCGGCGGCA
ACATGCCAAGGTCTCTGGCTGAGTCGTCTTCTTGCAGAAATGAGAGGGGAAGAAGCCAAC
ACTTTCAAGCTTCTGATGGACAAGTTTGCTACTGCACTGGCGAAGAATTCCGTTCATCAC
GACCGCAACAAATATATTGATGTCAAGTTCCATTTTATCTAAGATTGTGTTGAAAAGAAA
GAGGTGCAGATTGATCATGTTGGCATTAATGATCGGCTGATGTGTTGACGAAGGCAATGG
GTCGGGTGAAGTTCGTCGAGCTACGACACATACTTGGAATGAAGGAGGTCGGCAAAGGAT
GCTGAGCTGAGGGGGTGAAATGTAGCTCAGGTCATTAGGCTAGTTTTCTGCTTAAAATAA
ATAGTGCATGGCTGCCGATGTGACATCCATGCAGCATGCATGTAGCAGATGGAAACGTGC
TGCATGCACGATCTCTCTCCCATTTTTTCTGTTATTGTTAACCCGATCAGCCTGACGTGC
TTGTGCATCCGAAGGTCGTGGGATGGCGCGGCAAATCCGGATCACAGCGAGCTGGCCGGG
GTAGTTGATAGTTTCCTAATTTGTAACAGATAAAAGATTATGAAAAGAGCAAAAAACGCT
GTGCAGTTACGGCAGCACAAAAGACTCGCAAGATCGTTCGTGTTCATCACGAGGATATAG
ACATGACCATTACTAACTGAACGTCGTTCTTTCTTGCCACGTGATGTTCTAATCCTGATC
TTTAAAACATTCTTCAGGTTCGGGCTTTCCAGGGAGAGGGTGAGGCAAGTAGGGCTTATC
GCAATGGAGAAGCTGAAGCATGCTGCGAGGCGGAAAAAGCTGGATGCGTTGCTCCAGGAT
TACTGAGCTGAGGTGTTTTCCATGTTGTGCTGGGGCTAAATCCAGACACACAGTGGTTGT
ATATAGTCGAATCCAGACACACAGTGGTAGTATATAGTCGAAAAGAGAGAGTGACACATA
GGTTACATCATTGAATGGCTTCTACTGCCACTCGTCTGCAGATAATCATACCTATACATT
TTGTGACAACAGGCATGCATGATCAACGTCTCAATGCCACATTTTCCCTGGAAGCCGTTC
AAGTATTCTGTACTGTATATATAACTAGCGTCCAATGATCCGTTGTGGGGAAGAAAGCCT
ATGGAAGAGCGGCTCACGACCCGCCCCTACAATCAACAAGATAGCCCTTCATTATTTGAG
TTCGGAAAGTCACAGGAAAAAAAAAGTCAGCATCTCAAAATGCTTTTTAAAGTAAAGTTT
TGTAGGCTTTGGAAATATTTGTTAAAGTTCATCTAAAAAATATAATTTTTATTTACTGTT
CACCCGAGCTTAAATGAGCTTAGAAGCAGAAGGATGCTTTCCCACCTTTCATTGTCTGAC
TTTGTTTCTTTTTATTTTAGGATGAATGACTTTGTATCTAGATAGAAATCTAAGATTCCT
CTCACGCATTCTTCTATTTTCCGCCCTCCAACGGCCTTGGAAATAAAGAAGAGCTCCAAG
ATTCCCGTGGCTTCTGCCGGTGCCTGAGGTGGGTGCAGAGAAATAGTCAGAGTACAAACA
TCGGATGAAGCAGTTAACAAAAACAAAGGCTTTCTTTAAAACCATAGGGATAAATGGGCT
TTCTATGAGAGACAGAGCACAATTAACCACAAGCCTCTGAATTGGCCACCAGAATAGCTA
CGTATAGAACAACCCGTTCGGTTTTGAGCATATGGCAAATCCTACGGCCAAAGACGCTCT
ACACATGACATCTGATGGTTAAAATCATTAAGTTTGTGAGAGGACATGGATTAGGCTCTG
TTTTACCGTCCTAAATGAATGCCTCATGTAGCTTGGTCAAATAGAGCAAGACCTATCTCA
TGAATCTTTCTCCTTGTTATTGGCATGACTTGCGTTCTAAATAATTGTTGTGCTGAAGTA
AGTTTTTAGACCCCGAAACCGTCGAACAATAGTTCTACGGTAATTTTTTTAATTAAAAAG
AAGTGTAAATATGTACATGCAAAGAAAAGAAAAAGGAAGATACATGTCAACTACCCAGCT
CCTGTTTTTTCTGACATGATGAAATACTATCTGATGGAGTCTGTGGGTAGGGAACTTATC
TATTGTTCTAGACATGCAATGTTCTTCTCTTTAGTTCTGTGCTTGACTAGAGAGAGATCT
TGGTATAGACCCTGCTTCCAGGCATCTAGGCTTGGGGGGATATTATTGAAGATTTTCTCA
TTTCTTTGCATCCATATGTTCCAGCATCCCATAATGACAATGTCCATGGCAATCTGGGGT
GGGAAACATTGTTTGAGGAAGATGAATCATCAAAAGCAAAGACACCTCTGTGTCTGTTTG
GAGCAATAATATCCCAACAAGAAATCGCAAATTGACAGTCCCACGGGAGATGTAGAGATG
TTTCCTCAACTTGTTCTTGGCAGAGTGCACATTCATAGTTCTGAAGCAAGAAGTTTTCCC
TTTTAAGCAGGCTTCTGGAGCTAATTTTGTCATGAAGTAGCAACCAAAAGAAAATTTGGT
GCCTTATTCTGTTGGCTACTTTCCATAGGTCTCTGAACAAGTGATGTGTTACACAAGGAC
CCATCAGGTGCTTGTACATCTTGCTGATAGAGAAAATGACAGATTTCCACTCATATGTCC
AAGTATCATTATTGTTTCCAAGCTACTGCAGAATGGGTGCAATATCATTCAATTGCTGAA
AGGCAATGGTAGAGAGTAGGGTGTTGAATTGCTCCATGATATCCAACGATTGCTTCATGT
GTATTACTGAACATTGGCGATTCATTGGAAAAGACTGTAATTCAGGTAGAGAGTAGGGTT
GTGGTGCCAATTGTTAGTCCAGAACAGAGTGGTGTCTCCACTACCCACTATAGAGTTAGA
CACTTCCATGAAGAGAGGAAGTAGTTTCAAATGTGCTTTCCACCAAAAAGAACCTTCCAG
TTTGTCTTATGGTGGGTTGGTGGTGTAATATGTTTCCCACAACAAATTAACCCGCGACAG
ATTTTGCTTGTTGAAGAATTTGTGCAGATTATTGATAAGCAAGGCTTTGTTATGCAGATG
AATATCTACCACTCCTAATCCTCGAGGGGACTTAGGTTTACAAATCGTCTCCCAGGATAT
CATTGCTTTTCCAGCTTCTTCAGAACCATATTTTCTCCAAAAGCAGTGCCTAAGGTATTT
ATTTATCTCATCAATTACTCCCAATGGCATGTCAAGGCACCTCATGAAGAAAGTTGGAAG
GGAGGAGAATACTGATTTTATTAGTTGTAGCCTTCCATCATTGTCTCCCAGGAAATAATT
GATGAAGTATGTTGCCTTATGACAAAGCAGAACAAACACATGTCATTTATTGTTTTTGAG
AAATCCAACGGTAGGGGGGGTTATAGCTAGCACGAGAAGGCAACAATATTATCAAATGGT
TTGGAGAACCGGATGGACCATAGGTCTAGGGCCTCTTTTTGCTCATATGTTAGGAATATC
ACGAGAACAGGGAACTTGTAGGAAACGGGATGCCAAGTAACTCAAATCTCATGAATAAGG
ATAGGAAAAGAGATGTCCTTTGGTTCACATCATAGGATTCCATTGAGTCTAAGCTAGGGC
CTCTTTGAGTTGCAGGAATTATAAAATGTAGCAATAAAAAAACATAGGAATGAAGTTGGA
CTCCTGGCCTGAAGAAACAACAACAGAGATAATAATTCTCCAGAGCTCAACATGATGTGA
AATTTTACGAATATTTATTTTGGAATATATAAAAAAATACTAGGAGAAAGAATTACCAAA
GAGGAGCCTCGATGGGTCCACAAGCCTGGGTGGCGCGCCCTTCTCCCCAAGGCGTGTTAC
CCTTGTTTATGGGTGTCTCACCGTGTGTTTTCCCTCTCCTGACTAAGTTAACATAACTCA
AAAGTTAGGACTAATAATTTTTTTCTATATGATTTGATGCATGAACTGATTGCTACTTGC
TTGCTTCATTGTGTTTTAAATCACAAAACTTCTCCTTCTCTCAAGAATCATCTCCTTGAT
CCAAATAATTACCCACTCACCATACCATGTGTATAGGAGTTAAAACTATATTTACAAAAT
ATTATTTTAACCAAAAAGCATTTATTCGACTTAAGCTTTAAAAAAACCTGGATTGAGGTT
TGTACTACAAGTTCTCAAATTAGGGAATTTGTTTTGCCCCAAAGATAATATTTGGACCAT
ATTATCAAAAAGACTTCCTAAAACAACAAAATTATCATTTTAAAAGTTATTTTCCTGTTT
TATTTAAATGTCTTTTTCCGAGGCCAGAAATGGTCTTTTATAAGGGAAAATATTTTTATG
CTTAAAAAATATTTGAATTTTTTAGGGAAACTGAGTGGACATATATGTTCCATATATAAG
AGTTCCAACACATGGTCATGTTAAAAATATTGGACTAAACCCTTCAAAACCCTTTGTGCC
TATTTCAAGTATTTGAAATNNTTCTATAAGAAATATTCTCAAATAATCCTAAGAAAATTC
TAGCAAGTCACACATGATATGTGTGGTGATATTGCCAAGTTTAATATCAATCCTAATTAC
GTTGTTTCATAACAATATTCCAAAATCCTGTTTGTCCAAATCCAGACTTGGGAAACTTTA
CATTGCCAAGTGTCTCCAATTATTCTCAAACTTTGCGGACATGTTCTAATCATCTCAAAA
TGCATCCGGACCAAGTGGTGCATCAAGGCGAACAAATTCACTTGACCAAATCCCCTCAAA
ACCACTTCTGTTGATTTCTAGANNNGGGAATATTTGCATTGTCAAGTTTATCCAATTGTA
CCCAAACTTTTTGGGCATGCTCTAAACCCCAAATAATGCCACCACACCAAGTGGTGCATT
GGGGGGAAGAAAATTGCATAAATGAATCTAAGAAAAACCCTTTGTGCCCCATTTTTAGGG
TTTATAGAGTTTACATTGGAAACTTTTATCACCAAATCCCAAATTTGGTGATAAACCTCA
TTTTCACCTAACATTTCATCCTGTTGAATATCAAGGAAAGTAGACTCCATTTACTTGCCC
AAAACTACATCAAACACCTTCTGGTGATTTTCCAAAGTTACTGTTTTCACCACTTTTACT
ATTTCCCTTGCTCTAAAGTTTTTACCGTAACACCTCCTAGTGTCCATTTACCTCGAGTAA
AAAGATCTAGCCCTAGTTCAATGATTGAAGGGGGTAAAACCCTACTTCACCCCTATGTTT
TTGCCATGGCAAACCACTTCTACCTCCCCTCTCACTCCTACCCCTGCCTTGCACCCTAAG
CTACCATAAAGCATCTCGAGAAGACCCTAGGAGCTAGTGGACAAGGTTAGGCGGCACAAA
GCGCGTGGGGGGCATGGACATGCCAGCCATTTGGAGCGTTTTGGAGCGCGCTACAGTGCA
CCAGAGCACTATAGCCGCGTCCTGCCTGAGGCCCCAACCACCTCGAGCGGAACTAGATTG
CCACGAGCCCCTCCTTGGCATGCGCAAGATGCCGGCTGTCTCCCCCCTCACCCCTCTCTC
TACATGGACCCCTGGTCATGCGTGCCTGATGCCACGAAGCACCGCCACTCGCTGCTTGCG
TGAGGGATCTGCCCCGAGCTCTTCCCGTTCTCTCCTTTCTTCCGCATCGTGGACTAGTCC
CACGAACACCATCAAGCCACTCTAGCCCTGTAACGCCCAAGATGTGATCGTGTCCTTATT
TTGGCATGAGGGCCTCGATAGGGATAAAAGCGCATCTCATCGTTTCGCAAGANNNNNTAT
CGTTATAAGTACATGTACTGAAGAGGTGAGTATATGGAA
