morexGenes - Barley RNA-seq Database

Contig contig_2547277

Source Contig contig_2547277

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_2547277 (5693 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_2547277

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_36747	1	828 bp	AK249314.1	Available	Available	None
MLOC_36746	3	1272 bp	MLOC_36746.1	Available	Available	LOC_Os06g05900.1, FRAME:+1, EVALUE:2e-159, 13106.m00585 protein methyltransferase, putative, expressed

CDS Structure of MLOC_36747

CDS Structure of MLOC_36746

Contig Sequence (5693 bp)

>contig_2547277 5693 assembly3_WGSMorex_rbca.fasta
CCCGCCGCGGCACGCGGGCGGGGGATCCGCCGCGTCCTCTCTGAACCCCGCCGAGGTGGC
CAAGTTCGCCGCCATCGCCGAGACCTGGTGAGATCCCTCCCTGACCTTGTGGGTGGGTGA
ACTCCCGTGCTTTTGTGCCGCGTGATTGATTATATATTTTGTCAACACTTTCCAGTGAAT
TGGCATGCATTTTTGTTCTGTATATATGAACATGCCTCTAGATATGTTTGATATCAAGGT
GCCTCTACATGTCAGGGAGTTGCACAAAAAGTACTACAGTCAGTGTATGGGCTACTGTGA
GTGGAGAATGCCTACTTAGTTTTGCCACGATGAACAATGGTTACTAAAATCAAATCTGGC
CTTTGGGGTCTTTGTACTATATCATCTCTGTTCTATGTAGAAGCATTCATCTGCCACTTG
GCCAGTGCAACACTTAGTATAGTCTGTATGTTATGGTGCTCGAAGCAAAGGGGCTGACAA
GTTTTTGCTTTGCATATTATTGGTTACTGATGATGATGCTGTTTCTGGAATAAATAGGTG
GGATTCTCAAGGTCCATTCAAGCCATTGCATTTGATGAATCCGACACGACTGTCTTTTAT
CCGCTCCACACTCTGTAGACATTTCAGGTACATTTAACGTACCCTGCATTTTGTTTTCTA
TAGAGCATTCTGTTGTGGTTTTTAGTTTTTTCTTTTCCCTCGAAGAGAAGACAAGTACAT
CGACTGCTTATTGTACCATTCCCTATTCCATATTGTCATTATTTTCCCATTCCTTAGTTC
TCATCATCAAGTTGCCTTTTGTTGTATTTTGCCTAAGTTCATCCTAAGGGATCCACATTT
GTTCTACTTTGACTAAAGTTAGTTCTTCCAGGAGGGATCCATATTCAGCTAAGCCACTCG
AAGGTCTTAAAGTTATTGATGTTGGATGTGGAGGTGGCATTCTCTCAGAGGTATAAAGGC
TTTTTCAGCCAATAATTTTGAAGAACTAAAACCTTCTGGTGTTTAACATACTAGATACTA
AATGCTTTTTGATGGTTTTTCGTCTGTGTGAAAGGGAGAATTAAATCATGTAGTTCACTT
GTATAGAAATGGATAATGGATATGCAATATTTGCCTTCTTACTTATCATAATTTTTTCAT
GCTAAGTGTCACATTGTAGAACGTACTCGCATTGGACTATTAGATGTAAATTCATGTTTG
CATCCAGAACTATCTTTCAGCATTTTGACTTGCTAGTCTCTATAGCCTATGATGAATGTC
TTAAACTATCCATGATGTATTCTCCTTGCCTACAATCTGAGCCGAGCTTATTGATGTGGA
CTTATTGCATTTCTAATCTAGATATATGGTAGCTAGTTGGTTTGGAATTGTGAGTCTATG
TCTCAGATCAACGTCTTTGTAGTGTTACAATGCAATTGGGACTTTAACATGTGTTTTCTT
GTTCTGTGTGATTGAACTGACGGATAAAATATTTGTTGACCTTTTGGATCATATGTGTTG
GATGACAGCCTCTTGCTCGGATGGGAGCTACAGTTACTGGCATTGATGCTGTTGAGAAGA
ATATAAAGATTGCGCACATTCATGCTGTATGTATTACTCATCTTCATGTCAATTATCATG
TAGAAATAGCTGTGATTATTTTCTTGGGACTTATTTTATGTATAATTTTGACGAGAAAGG
TGTACTTCTAAGTTTATTTATTGGCTTCCTGCTGATAACAATGAAACATATAATGCTAAT
AAATATGATCTCGTACATATTTTGCCTGATGGTATAGCACATGATCACTATTTATGCAGT
ATTAAGCTTTTGAGGACTTATGACTTCCATGTTCTTTTCCTCGACATTTACTCCTTTACT
CATGTAGACATCAAACGCCCATAAAAGTGAATCGATTGTTCATGAGTTTACACTGCCGGA
ATTGCCAGTCAGAACCATGATGGATTTATTACATTTTTAGCCAACGATTTTTGCTTCGTA
CCTTTGCAGGCATCTGATCCAACAACTGCTTCCATTGAGTATTGCTGCACAACCGCTGGT
AATCACTTTCAGGGCATATTCCAGTGACTGTTTAGTTATTTAGTTCCACTATGTGGTTAA
AACATTTGCTCTCTTGATTGAACATTTTTTTTCTCAGCAATTAACCAGACTGTAAAAGAA
GACCAGCAACTTCCAAATTTAGATAATATAGATTGAATTGAGATATATAAGTAATTTAAT
TCTTCTATTTCTTGTGGCTGAAAATAGCAGAACTTATGCAAATTATTGTTCATATGCAGA
GGATTTGGTAAAAGAGAACAAGCAATTTGATGCTGTAATTTCTCTTGAGGTATGAACATT
TTTGTCCCATCTTACACATATGCTGTCTTCCGAAGGTGCTTGATCAAGAATAGATTGCGT
CCATAGCTTATTTATCATAGTATACGCCATCCGAGAGATGTTTTGGTAATTGACTGATGC
GGGCTCCCTTTTAAAACCTTTGGGGTGATATTGAAGAATGCTTTAATTATGCATTACAGG
CATATAGCTTCTGCTAGAACCGTGTGTTAGGAGAGCTGCTGGCTCTATCCACTCAAAGAA
ATGATGCAATTCCATTAATTAGGACAGTTCGAATTATATTTTACTCCATCCGTCCCAAAA
TAAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTAT
TTTGAGACGGAGGAAGTATTTGCCAGGGGCATCTATATAAAGAAATCGGCCATCTGCGCC
ATCCAATCAATTAAGCTACACAAAGTTCATGAATCTATTCTGCCTCCTTCTGTAGTCTCC
CTCATTTTTTGTCGCCTCTCAATCCCTAGAGTCAAGTCATGTGTTCAAACAATAGGAGTC
ACCGGTGCAAAATATTGGGACAACTATCGCAACCTATGACGCAATATCACAATACACTGT
ATAAACTCTTTGTGAATAGGATGATTAAGTACCGTGTGCCTTGCACGCACGGCTATCTTA
ATTGAAACTAGTGTATTGGATCAAAAATATGAATTATCTTAATATCTTTGCAGGTGATTG
AGCACGTTGCTAATCCTTTGGAGTTCTGCGAATCTCTATCAGCTTTGACAGTTCCTAATG
GCGCCACTGTGATTTCTACAATCAACCGGTCAATGAGAGCATATGCGGCTGCCATTGTTG
GTGCTGAGTATATTCTCAGATGGGTTAGTCTCATTTTCCACCTGGCGGTTTTCTTGTTGT
TGTTGTTGTTTCAATTCCTATGGAAGATTGATTCACATAGTTGGCAGTCTGTTATGTTGG
GAGTAATATGCCATTTCACGGTCGCTAGCTTAGCAAATCTACTCCTGATATTGGAAGATG
TCCTAATTGTTAATGCTCTTGACTCATGAGCAGTCTCAAGCCAAATGAAATATGTCATTC
AATTCATCAGCCTAACATATGGCTTTGCGTACGCAATGGTAGGAAGGGCCTGTGTTATCT
TGATTTCTACTTCCTCCGTCCCACAATATAAGAGCTTTTTTCAAGCTATTGTTAGCTTGA
AAAATGTTCTTATATTGTGGGATGGAGGGAGTGCTATGCAAGGTCGCACATGTGACAGAT
AAACAAAGGTGTAGAGATATACTGATCTGTATAGCTAGTTAGCTGTGTTTGTTGGGCTAG
AATTCAATAAGGGTTCAGATCCTCCAAGGAAATAGAGTGCTATCATGTTCATTAGCAAAA
TAATCAACAAGCTGTTTCAACATATGCTCATTCCTACTAAGTTTGATGCTCCGATGAATC
TGAATCAGTGACACTGTACTCTTGAAGTCTTAATGGTTTTCTTTGTACTTTTACAGCTTC
CTATAGGCACACATGAGTGGTCGAAACTAGTCACCCCTGAGGAGCTAGTCCTAGCACTGC
AAAGAGCCTCAATCTCCGTAAGCTACTAATAACTCCCACACGATGATCTTGCTGCCACTT
TATATAACTGACAGCTTGACGCCTTATCTCCAGGTCGAAGAAATGGCAGGCTTTGTCTAC
AATCCGTTGACCAGAGAGTGGTCCCTGTCTGATGATACAAGTATAAACTACATCGCTTAC
GGCATCAAGAAGAGCGAAACACCCCCAACAATGCCACATCAGTAAGATTAGCCAGTCATG
TTTGGAGAGGATTGTCTGTGTATCACGGTAACAAATTTTGGAAGCAGAAGTCGTGCCACT
TAAGATCTTAGCAGCGGTTGCAATCAAGCAAGGCAAAGAAGAGGTTGAACTCCTGGAGTA
TTTTTGTTTTCTTTGAGAAGTTGATGGGAGAGACCAGCTAACAAGTAGGGCTAGTTAGTT
TCCACACTTTGTAATAAATGTATGCTGCATACAAGTTCATCAAGTTTGGGGTAACTCCCT
CTTATTCACATTACATAAACAGAAATATACTGCCCCTGGGCAAGCAGGAAATGGTACCAA
GTCAAGTGAAGGGTAATGTTTTTTGGTTATGTTCATATCTGCACTGGTGCGCATTCTTTA
TTTGCATTCCTTGTGCTCGGTAGGCTGACAATTTGGTATGCATAATAATACTTTCAAAAG
CTATTTTTGTGACGTGAAGAATTATATATTAGGAAAATTTTACTACACCTTAACCTACAA
GCTTATTCTCCATTGCATATTTCCGCTCAATTTCGAACATTGAAACAAGCAAGATCAGCT
TTACGAAAGGCCAACATAACTCGTCAGGCATATGAAAATACCAACCACAGACTTGAGAAG
AACTACCAACATAGCATGAGTATTAATTCTTCTCGGGTACTGAAATTAGTCCTAATCTCA
ACCATGATAACATACTGGTAGAGAACAAACCTTACACAATCTGATGGATCCATAGTTCCA
TACACACCGGACATGCAAGACTACTAGTATTAAGGTTCAAACGCAAGTACACAATATCAT
CGCTTGTTTATTAAACGAAGGATGAACTGCCTACTAACGGTTCGATCAGCCAGCACGACG
CTACTACAAACATGGCTGAAGGTGGCAGCCAATAACACCAACGCATTACAGTCATAGTAG
TAACCATCTCGTTTGGAAGCGGGACATGCTCATGGATCATCATCATCATCTCCGACAGCG
TTGACGCGCTCGCACTCATCGATCCATTCGCTGTATCTGCAGGAAAGATAATACGATCTT
CAGTTACTAGTCTCTGATGTATTTGAACCCACTCACTAGTCAGGAGTTATTTGTTGGATT
TGACTTACATATCAATAGGCTCAGTCAGCGCTGCACCAAAGAAAACAGATAATTAGTACA
ATATATACTGAATATATGTAGCTCAGCAAGGGTAAAAACTCTAGTGATCACTGTTTCATT
TACATGGCATAGTCACACAAAAACTTGTAAACATGTGGCACAACAAAGGTTAACCCTCTA
CAACACTGTTTTTTATTCAAGCAATATTATTATACAGGTTCAGTCCTGAACTTCTGATGA
TCCATGTTTGTTTCAAGCAATTCAGTTAACTCAGGTTTGGAACATGATAAAATAGGGAGC
CACATTGCCTATCTTACAAGCATGGTTGTGTGATTTAATGGCAACCAAGTACGTATATAA
CTGTACATGATTACTACTTCGGCTCTGCTCCATTATGAGCTAGTTGATTAGAATGACTAA
ATCCCCAAGAGTATATGAGATAGGCATGGCTGTAGGAAATTTATACCCCCTCC