morexGenes - Barley RNA-seq Database

Contig contig_2547265
Source Contig contig_2547265
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_2547265 (8635 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_2547265

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_36735	3	1603 bp	AK248365.1	Available	Available	None
MLOC_36734	2	1480 bp	MLOC_36734.1	Available	Available	LOC_Os06g05090.1, FRAME:+2, EVALUE:0.0, 13106.m00479 protein methyltransferase domain containing protein, expressed
MLOC_36737	1	216 bp	MLOC_36737.1	Available	Available	None
MLOC_36736	1	452 bp	None	Available	Available	None
MLOC_36738	1	366 bp	None	Available	Available	None
CDS Structure of MLOC_36735

CDS Structure of MLOC_36734

CDS Structure of MLOC_36737

CDS Structure of MLOC_36736

CDS Structure of MLOC_36738

Contig Sequence (8635 bp)

>contig_2547265 8635 assembly3_WGSMorex_rbca.fasta
CGCCGCCGCCGCCGCCGCCTCGGCCGCCGGGGGCGCGCCACCCGTCGACAAGGAGGTCGA
CTTCGCCAACTACTTCTGCACCTACGCCTACCTCTACCACCAGAAGGAGATGCTCTGCGA
CCGCGTCCGCATGGACGCCTACCACTCCGCCGTCTTCCGCAACCCCCACCACTTCCGCGG
CAAGGTGAGAACGAACGGCCCCGTCCCCGCGAATCGCCGGAGGTCCGGGGTTTGTTGTAA
TTTGTGGCTCCGGCTTGATTGGTTCGGTGGATCTGTTAGGTGGTTCTTGACGTCGGCACC
GGGAGCGGCATCCTCGCCATCTGGAGCGCTCAGGCCGGCGCCAGGAAGGTGTACGCCGTC
GAGGCCACCAACGTGGCGGAGCACGCCCGCGAGCTCGTCCGCGCCAACGGGGTCGCCGAC
ATCGTCGAGGTCATACAGGGGACCATGGAGGACATTGTGCTGCCGGAGAAAGGCGAGCCT
TTTCGTTTCTTGACCCCCTCTTACATTTGTTCGTTCCTGAATCGATGGTGAACATTTGAA
AGCACTGGTGTTGGCCGGTGGAGTCATATCAATCCCGGCAGTATTAACAGCAAAATAGTC
AAGTCTTTCATCTTGAAAGGGGATTTTTTTTACAATATGAAAGATATGATTTATATTGAG
TATTGATCAGTTTGTTGTGTGTATTGTCTTTGGAACTGCAGTTGATGTCATTATCTCTGA
GTGGATGGGCTACTATCTCCTGAGAGAGTCCATGTTTGATTCCGTCATATGCGCACGTGA
CCGTTGGTTGAATCCAGGTGGTGTAATGTGAGTAAAGAGAAGCATTCTTTAATTCTAAGT
TTGCGAAGTAACTTGTATTGTACTGGTTTGGAATTTTCTTACGCAGAACTGCGATTGTTA
TATGCAGCCTGATCAAATAATCTTTAAATCAAGTTAAATTGACAAACACATGATCATAAA
GTTTTGTTTCTGAAAGATGGCAATACCCTTTCTGATTTTGTTGTTTGCACAATCAAAACA
CAGATGTCCTGATGCACGATCAATCTTTTGCAGGTATCCTAGTCATGCTCGGATGTGGTT
AGCACCGATAAGAAGTGGGCTGGGTGACAAAAAGATGGAAGATTTTGAGCATGCCATGAA
TGACTGGAATCTGTTTGTTGAAGACACCCAGGCTTATTATGGGGTAAACATGAATGCCTT
GACAAAGGCATATCGTGCAGAACACGAGAAGTTCTATCTCAAGGTATGTCTTGGTACAAA
GGCATCATATGTTTGTTGTTTGTTGGATTGCCATGCTTTCGGTATGAAAAATGTGACACA
ATCAGACAAATAGAAATTTTATAATGGTATTTTTTGGAGTATGTACTAACAATTTATATT
CATAAAAATAGACAAAATCCTGTCAAAAGTTCTTGTAGTTCTTTGTTTCTCAAGTAACTC
CAGTCCTGGGATGCAATACTTTTTTTGGAGCTTATAAATGACTTGCTCCTAAGGCCCTGT
TCGGAGTCTCTCTCCTCCACTCCACTCTGCAGAGTTGTAGAGCTCGGTTTAAACCGCTCC
GTCAAAATAAGCAGTTGATTGCTCCGCTCCGGGAGCACAGTCAGGGAGCAGAGAGGAACA
GAACATGCACTAAATACTTCCGTCTGTAACTCTTCGAGTCTAATATGCCCTGTATTTCAC
AATTAGTCACTACATACTTCAGTAATGACCCTTGATTCTTTTTACGGGACATTTCTTACA
TCCATAACCATTCTTTGTATTCTTCTGCAGTCTTCAATTTGGAACAATCTTCATCCAAAC
CAACTTATCGGACAACCTGCTGTCGTCAAGGAAATGGATTGTTTGACAGCAACCGTTGAA
GAGATTCGAGAAGTTAGAGCACAGGTTACATTGCCAATCAACCAGGATAGAACAAGGCTA
GCTGCATTGGCTGGGTGGTTTGATGTTCACTTTAGGGTATGTCTAGCTGTATCATTACAC
AGCTCATCTCATGTTTTACTCAATGGAAGACGCTCACCGTTTTCCACTTTCAGGGTAGCA
AGCAAAACCCTGCAGTTGAGGAAGTTGAATTGAATACAGCTCCAGATGAGAATGGTGGGA
CACACTGGGGCCAGCAGGTTGGTTTTCTAGAATATGTATCAATATCTTTTTCTGCTGTTG
CAGAAATTTTATCCAGCTATAGCCACAGTATAAAACTATAAAATGCTACATCCTTTGTTC
TTCAACCTGTTAGTTGAAAATAAGAGAGATAACATGTAAAGCTCAACCTTTATCCCTTCT
GTATTGTAAGTAGGGGCAGAGAGACAAACTATTCTTGTAAATTGGGAAATTAAGTAAAAT
AGTGTCTATTTATTTAATAACATCAGACTACTTATGAGGATATGAATCCTTTTATTTGAA
ACAGTATATTCTTGTGATTATTATGTGACAAGGGAAATACATAACATTCATAGTTGCCTG
GCCTGGCACAAGTTGACTGTCGTTTGTTTTCTTTCCAAGGTATTCTTGATGACTCCATCT
CCGAGAGTAAATGAAGGGGACAGTATCAATGTTTCGTTCTCGATGGTTCGCTCGAAAGAG
AATCACCGTCTTATGGATATGGATATCACCTATGAATTGAATGAGGCATCTGGCAGGAAG
CTGCCTGCAGTCGCAACCAAGATTTTCTTAGAGTAGAGCAAGGTTTGGTTCTCCAAACTG
CAATCTGTTTTTGAATTCTTACCCATTCAATTATTTAGCTTCAAGTTGCTCGATACATTC
CAGCTATGAATCACTCTGTATTTTCATCTCGTTGCTTTGTTGTGGAATACCAGGATTCGA
CCTAACCTAACCCATCTTTATTTTTCTATTTTAACAGATTGCTGACTGGATCTGACTCGT
TCGATGGAATGTCGGGGCATCGTGTGCTATCATGTGTCATTGTGCTGCCGCATCAAAAAC
CTTGCCCGAAAACATTGGTCCCTGGTGTGTTTGGTTTTCATTGTATGGCCTAATGGCCAA
CCTTTGTGTAATACATACTATGCGGGGTGTGTAACAGTGATACCATGAGGCATGATCTGG
TGCCAGAGATTTTGTTTGTTGTATCAGTAATTTATTATTGCCATTTCATTGGTTGAGTGA
TTGGAGCTGTTGCCTCTAGATGTTGTTCTCCTTGCAATGCCTGTGCTGTGACTTTTGTGC
AACTTATGTTTTCGCGTTCACTACATTTTAAAAGTAAGATAGAACCTGCTTTTGTGCAAC
TTATGAAATTCTGAACTGTTTTTGTGGTGAGTTTTACCTGCTTGGCAATCTAGTTCCATT
TAACTTAACTGGATTGTTTGGATTTCTCGAAAAGATATTGGTTTGAATTTCCCTAAAATA
CTCCACCATTGTGAGTGCATTTCTGAAATGTTTTTGATGATGTGTATTTGCTCACTGCAT
TTTCAAGGCAAGATACTAGAAGAGACTGTTTTTGCAGTCAGTTTTGGCTGCTCGGCGATC
TTGTTTCAATTTCCATAAAAAAAGGTTGGTTATTTCCCTAAAAAAAGATGTTTGGTTTGA
ATTTCCCTTATTGTTTTGAATTTGAATACAAGTGTGGGTTTCTCATGTCGACAGAAATCA
AGGCGTTTATGGATAAGCTTTTGCATTGACAGTAAAATCAAGGTATCCCTGGATGAACTT
TTGCAGATGAACAATGCTCAGTTTTATCTATCAACATAAACAAATTTTTTCCCAAAAGTT
TGGAAAACTCCCAAGTGATAGTGCCAGTTCCCTTGAAGAGTTCATATCAGCTCAGCGCAG
TCAGTAGGCAGGCACTGTGAAAACGATAAGGTTTTGGACCAGCCGAGCCCGGCACCCAGC
TCCCTCTCCTTCCTCGCCGCGCACCGCCACCCAGCTCTCCGGAGCTCGTCTCCTCCCCTC
GCCGGCGCCGTCACCACCATGCTCCTCCAAATGCGCGGCCTCCCGGCCGCCCCTCACCAC
CCGCTCGCCCATCCACACATCTCCCCCGCGCCGCCGCCCTCCCTTATCGGTGCCCGGCGC
CGCCGTCCGTCACGGAGGCTGTCCAAGGTCGTGTCCTACTACGGCCTCACGACTCCGCCG
TACAAAACCGTAAGCGCGGCCAACCATGTCATCTTGCCCAGATTTCCGCGCCGCCATTAA
AGAGGATGCCGCCTTCAGCTTCTTGTTCTTGGTCGTTGCAGGACGCCCTGGAGCCGTACA
TGAGCAGGCGGGCGGTGGAGCTGCACTGGGGCAAGCACCAGCAGGAGCACGTGGACGGGC
TCAACAAGCAGCTCGCCATCAGCCCGCTCTACGGCCACACCCTCGAGGACCTCATCAAGG
ACGCCTACAACAACGGCAACCCGCTGCCAGAGCACAACGCCGCCGCCGAGGTACTACCCA
TTTGCGCACACCGTTGCCGGAGATTTCAGTTTCAGCTTGATTAACCGTTGCAGAATGCAG
ATACTGGAACAAGGGGATGCTGCTGTAGTATTTGATTCCTGCAATTCTGAACCTGGATGC
TATATTGTGGTGTGTAGGTCTGGAACCATCACTTCTTCTGGGAATCGATGCAGCCCGAAG
GCGGCGGCTCGCCCGAGGCAGGCGTGCTGCAGCAGATCGAGAAGGATTTCGGCTCCTTTG
TTAATTTCAGGGAGGAGTTCATGCGCTCGGCGCTGTCGTTGCTGGGGTCTGGTTGGGTTT
GGCTTGTCTGTAAGTCTCCCTTGACCATTTCAAAGTTTATTCACAAAAATAACTAAGTAC
AGGCTATATCTGCCCAAAAGCCTGGTTAATAGTCTCACACAGCTGGATGTTTTGCTTATT
GCAGTGAAGAGAAGCGAGAGGAAACTCGCGGTGGTTCATACTCTAAATGCTATCAACCCA
CTTGCTTTCGGAGATATTGTATGTTTACTCAACCCTTTTTTTTTTTCTGTCTATGTGTGT
GCTTCGTTGAATTGTATGAGACATTTCCAGTTTGAATCTTTGCAATGACATTTCGTGTCT
TCTTCTCTTTCAGCCAATTATCAGCCTAGACTTGTGGGAGGTAAGGAAATTGGACCTCTG
TTTCGATCCTATCGTGTGCCAACTTCGAGGTACTGACATTCCTCTTTTTCCTTTTCAGCA
TGCTTACTACTTAGATTACAAGGTACTCCCCCAGACCCCATGTTTCTGCTTGTTATCGAA
ACCTAAAAATTTAGTACTAATATACCTGAAAACCACTCTGGTGCTTTTTAATGATGCAGG
ACGACAGACGAACATATGTGTCAAACTTTCTGGATCACCTTGTCTCTTGGCATACTGTCA
CCTTACGCATGATGCGCGCGGAGGCTTTTGTGAACCTTGGTGAACCAAATATCCCAGTGG
CATGATCTGTACATGACCTGGAGTTGTCTCTGGCTATGTCGATCTTACAAGGTAATTAGT
TTTGCAGCGTTATACCTGGCATATCTGCACCTTAATCAAGTACAACCTCCGTCCGAAATT
AACTGTCATTAAAATGAGTGTATCTAGACGTGTTTCAGTGTGTAGATACACTCGTTTCAG
TGACAGTTAATTCCGGTAAGAGCGTTTTTTTTCTTCGAGAAAACGCAAGAGATTTTGCGC
TTCGTTGTATAAAAGAGAGAGAGTTGTTACAATCCTCCTAGGAGGCTATTACAGGTTTCC
GGAACATAAATTCAGTGAACATCCCATGTTTGGGGGATGATGGCTCTAAGCCCTAGAGCG
CGTGCCCAGTGAGCGGCCTTGTCTTTAATCTTCGTGAGCATGGTGTCCACCGATGGTTGC
CCTCTATTGAAAACGCAGTCGTTGCACTGTTTCCACAGCATCCATGGGACGAGGAGGGTC
ATGGTGCCCAGGCCTTTGCGCATGGGAGATGGGACGGATTGCCTTTGTGCATGGGGTAAG
AGCGTTTTTGACAACACTCTTATATTATGGGAAGGAAGGAGTACCATTTAACTCCCTGCG
TGAGGTAGTATATGGTAAATCAAACCAGGGTTCAAGGTATCAGTTCCCTGTTATGTTTCT
TTTTGTAGCTATGACCTATGAGGTAAGCAGTAGCATTATACTTGCTATATTTGCGGCTTA
ATCAAGTACTATATCATTTGATTCCCTGTGCTTGAGGTGGTATATAAACAATCAAACCAG
GGTACAAAGCATCAGTGCCCTATTATGTTTCTTTATCTAATTATGAGGTAAGTAGTGGCA
TGGCAGTACCAGAAATTCTGGTACACTGCTACACTGCTACAAGGGATGTTGATATATCAT
GTAATTTTTCTACTTTCTGCGCAAGTGACAATAAAGGTTCTCTTGAAAAGCTAGCACACA
AGGCAATCGAATATTGGGTTTCAGTCTTAGGCGCATGCATTTGGGAGTATCACTGTAAAA
TCTGTTTCTTTGGATGAGGTAGGAAGTAGGAAGCATGCAGCTTGGAGTCCAGAGCAGAAA
GATATACTCCCTCCTATCCATATTAATTGATGTTAACTTAGTACAACTTAAGTACAAAGT
TGTACTAAGTCAGCGTCAATTAATTTGATCGGAGGGAGTAGTGAAATTTGGTTGCATCTT
AGTATTAGAATGCCCAGGGGTATATGTGGCAGGTGGTTTGTGTTGTTTCATTTCTTTTCT
TTTTGGGTGTGAGCAATTGCTTAGGTGTCTGACCGTACACAGTTAATGGTCGGAGAAGGA
GTTTTTGCCAAATCATCTTATTTCGTTCTGATGAACAAACTAGCACCACCAATATGGGTA
TATATCGTGAAAGTTTACTACTGAGATATCATTGTTTTAGATAAACAGGGAGAGCTCCCT
GGCTCCATTTCATAGAAAGAAGCCTGACAAACCATCTCCACAACATAAAGGTCTTACAAA
AGCTCAAAATAATATCAACTTAGTAGAACTCGAAAGGGGAAACTACTCTCCAACACTGTT
CCCCAACAATCACATAAGCGAACCGCAGAGCACCTTTTACACAGCACATAAGCCCCAGTA
ACTGAGGATTCAGGCAGTTTGCCGAAGCAAAGCAGGCAGCTTCCAGCGTGGAGGTGGGGC
TTCATAACCTCTTAAATTATCTGTGTCCACTACTTTGTAACTTCTTAAATTGGTAGACAC
AAGTGCCTTTTGTCAGTATTAGCAACTTGAACATGTAGAAAAATATATTTTTTCTGCTGG
GCCTCAATCTTTTTCTCTGGACATTGTTAATCTACCACACACCCGTAAGAAGAACTCACG
TTGAGGTCCCCTCTTATTCTTTAAAAAAGTAATATCGGAGGTTATACGAAGTAAGATGGA
TGTTTTATGTATGGTTTCCCTTTAACAAGGACTCTGAACCTGCCACATTCTCCGAGCCTT
TGAGCCATAATTACACATCACAAGCATCACACTATGCTATATTCTGACAACCAAATAATA
ACTAAACATCACACTAAGCTATATTCTGGCAACAAAAGATTAATCATATCATTGAAGAAC
CCACCAGACCTATTGCTGTCAAGCTTTCCATGTCCTGCACTGAGCTATTCGATGCAACGT
TCTTGCGCCCCATTATATGTCCGTCGCAATCCCCAAGGCCCATGAATGTTTTAAACATGC
CAAGTGGTCTGCTTGTCTTCCGTAACGATAGAAAAACGTTCAGACCTTCTAAAATATCTT
GATCCCTTTTTTCTCGTCCATTTGTCAGGGACGCCAAGGAAAGAAAATCTTACTGGAGGA
GGTGGAGACTTTGCGGGGGCAGCGTCATGCGATGCACGGTGAACAAGTAAGCTCTGCCTG
AAGATAAGACAGCTGAGGTTTCGTCGTTGTCCTCACCCGTCGCTACGGGGAAGTAACCTC
CCATTCCAAGTTCTTATGCAGTAAAAGCAGACATGGACGCATGGGGACTCGACTTTAGAG
TACAAGCTATCGAACTAACTTGTGCGCGAAGCCAAACTTTATGTCTTCAGTACAATCTCC
CATGGCGCTGACAGAACTTAGAACAGCCCCTGCTTTTCCACGGCTTGTAGTCATAGTTTT
TCATCATTCTGTTGTAACAGAATTCAGCCATTGTGGACCGAGGCAGATGCCCATGAATGT
TTGCCTTGTTCAAAACACATTCTTCTTTTTCATCAATAGTCGCCTGGGTATATTATCCTC
TTTTTCTCCGCCTGATTCTTTGGAACATATCGAATGGTCCCTGCGCAGCCACGGGCGACT
ATTTATACTTTCCAGATCTTCTCGGTGCCTGTATCTTTTTGACGGTTGAACCAATGCCTT
CTTTGTTTCATCTTCTTTAAGCAAAGAGGGTAGGAAAAAAGTTGTGTTATGTTGACGGTT
TTCAGAAAGAATATCAGCGTGCAGTTCGCTGTGGACTGTCTACCTAGCTGCTGGGCCTGG
TTGGTATGGCAGGTTAACCTGCTCAAGCTCAACCAACATCAGCCAGACCAGTATGCGTGG
AATCATTTGTAGGCCGCACATGTTTGTTACAATTTTCAGATAATATCAAGGTGAATAAAA
TAAAATAAAATAAATTGAAAAACGAAGCATTGGTTTGATGTAAGGGAACCAGAATCTGAT
GCTAATTAAATTAAGATGCAACACGAACCATGAACGATGATTACAGCGGTAGTCTTATCC
GGGACATATAATGTTACAGCAATATCTGATACAGTTTTTTTTTTTTTTTTTTTTT