morexGenes - Barley RNA-seq Database

Contig contig_2547254

Source Contig contig_2547254

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_2547254 (7061 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_2547254

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_36729	1	830 bp	None	Available	Available	None
MLOC_36730	1	1404 bp	MLOC_36730.1	Available	Available	None
MLOC_36731	2	1128 bp	MLOC_36731.1	Available	Available	LOC_Os02g02840.1, FRAME:-2, EVALUE:2e-126, 13102.m00240 protein ras-related protein, putative, expressed

CDS Structure of MLOC_36729

CDS Structure of MLOC_36730

CDS Structure of MLOC_36731

Contig Sequence (7061 bp)

>contig_2547254 7061 assembly3_WGSMorex_rbca.fasta
TTATAGCGCTGGAATTAGGACCAGTGGAGCCCCGTGGCCCCACTAGACACTAGGCCACGC
CAGGGGGGCTGGCGCGCCCTGATGCCTAGTGGGAACCTAGGGCATCCCCTCTGGTGGGTC
TTGGTTCTAGTATTTTTTTTGTATTTCATAAAAACCTCCAAAAAGTTTCATTCCATTGCA
AGAACTTTTATTTCTGCACAAAAACAATACCATGGTAGTTCTGCTGAAAACAGTGTCAGT
CCGAGTTACTTTCATTCAAATCATGTAAATTACAGTCCAAAACAAGAGCAAAAGCGTTAG
AAAAAATAGATACAATGGAGACGTATCACACACATATCTCACATTAACTTCTTGCTAGTT
GTTTCTCGTCTCTAAAATATAGGAGGAGTGTTGATCCTTGTGTGTGCTTTCTGCATTCCA
AAAGCATACGTAAATAGGGCACACATCAAGGGGAGCCCCGTCTATATTCTGTTTATGATA
TTTGTGTATGCAAATCCTACGTCGTCATCAATCCACCAAAAAGGGGGAGACTGTAATAGC
ATATTTTTACCCCAGTAGTTTTCGTGATTGATGACAATGTATTTGCAGACTAATCGTGTG
CGCTAGGCCTTTCAGAGAATTCATCATTCAGCACAAGACGATTCAAGCCCCTCGATGGTT
AGAGTAAAGACAGTTTCTGTCGTGCGTTTCTTTCTCGGTGGAGTTGAGTCGTAGGAGAAC
CGTACTAAGATAGACGCCCTAAACCGGAAGCGAGGGAGTAGTGTAGTACCAACTTCATAT
TGACTTCATGGTTGTTGTGTGGTGTCAAGTGAGTATTAGGGAGTAGTTTAGTACCAACTT
CATATTGACTTCATGGTCGTTGTTTTGCAGTCCTCCAACTTCAAAAAACTCCACAAATCT
ATCTTATCTTTGTGGCTTCTCAACTCCATGTAATGATTTTATTTTGTTCTGCAGCTAAAT
CAGCTTCTACATTGCCATCTTTGTTGGCAGTGGTTGTTGGGTTGTCTAGCACCATACTGG
GTCGGCGGGAACCATCCTAGACCGGCTTCCGAGGGGAGATGTTGTACCGGTTTGTAGTGA
TACCTGGCTGTCGAGGGGATAAATCGTTTTCTTTTGCGTGGATGGATGAATCGTTATGTT
TGGCGATGGTACTTCTTGCAGCTATTCCATTCGGCTCGGCTCCGCACAAAGAGTCTGTGA
AGCATGGAGGGGGGGGGTTATAACAGCCCTGTAGTTGTGAGAATTTCAGGGAGGGTAATT
CCTTTGTTTGGTTACGGTAATTCACCAAGGATTAGCAGACAAGTTATGATGAAGTCTCAA
GATATTTACATCAGTTATGTTCCAATTATGATGAAATCTCAAGATATTTACATCAGTTAT
GTTCCAATTATGATGAAATCTCAAGATATTTACATCAGTTATGTTCCAATTATGATGAAA
TCTCAAGATATTAACATCAGTTATGTTCCAATTCTCACATCATCCCTTGTTAATAAAATG
ATGGGAATTTGGACTCCAAACTAGCGCCTCAAACCCAGGACAGGGACGTTTGGTATTTGA
ATGTATATACACTCTATGTGTAAAAAATAGTAACTACATAAAAAAGTTAAAAACTTCTAA
AAATATTTTTTGAAATGAACTTGACCTTTCATTGTATTTGTGTAACGAAAAATGCACAAA
GGGAAAACATCGTGGACTTCTTTAGAAAAAAAATCTCGACCAAAATAGTGTGAATAGTGA
CCTATAATAGCGATAAATTTTGTTCTTTCTTGAATTCAGTGCTGGTGTTTTATTCATGAA
AATTTATTTACTAGTGCAAAAGAAAGTCTAGTTTATTCTAACAAACTTCTAAACAGACAG
AAAGCACGTCCGGAAAAAAAAAATGGAAGAAAAAGATGAGCCCCCCACACCCTTTTGATG
TACCGTGCAGTCAGAGAAGAGACACAAGCGACGCTTTGGCCGAGTGGTTAAGGCGTGTGC
CTGCTAAGTACATGGGGTTTCCCCGCGAGAGTTCGAATCTCTCAGGCGTCGTTTCCTTTT
TTTTACTTTTTTTTTCTTCTTCCTTATTTTCTGTTCCTTTTACTTTACTTATTTACCAAT
CTTCTTCCCTATTTTCTGTCCCCGTGCGAGAAATATTAGTGATTGGTGTATGTATTTATC
CTCGACAGCATAATACAATATGTGATATCGGTTTCTCTTTTTCATTACTGTCGCCATGAG
GAAAATATCATCCAAAGGATAGCCTCTGAATGGCTGACACTTTTTTTTTCTCTATTTTTT
TTCTTTCCTCGGACAACAGCATCTCAAGAAACGAGAATGCTACACCTCTGAATGGCTGAC
ACTTTTTTTTTCTTTATGCGTGATTTCATCTGTCTCATGTCCAATCAGCGTATAGTCGTT
GGGGTCGTAGTGTCGGCTGCCGGCTTGCAGCTAGCATCTCAGCTGCCCCCGACCCCTCCT
TTGCAGCAGAGGTGCGGTGAGCGCTTATCCGCAACATCGCCACGAAGCAGCGATGCGTTA
ACGCAATCGAAACACATGGTGCATCCGAGGTTGCACAACGCCGCCGCGATACCACCTTTG
CCGTGGGATGCATACGAAAGGTCACGCAAGCGGAGACGGCGCCATGGCACCTGTGTGCCA
TCGGTACAATCGAGCGGCGTCACCTAGCAAACTGTCGATGCAATCGAAAGGCAATGCGCG
TCCGAGACCGCACAACGCCGCAACACCTTGCAGCGTGGAAATTCAGTCGGTTGATATAGA
AGGCCTTTTAACAAAATTAAATTGTAACCCTAGTCCATGCTCCTACTTGATCTGGAGGTA
AATAATAAAGCAGAAAAAACAACTCGATCAAAGATCCAGCTGACACGAGTAATTGTTCTA
AAGCAATAATTCCATCTGAATTGTGGCGTCGGATAAATTCAGCTGCCTGGACATCTTCTG
AGTTGATTCAGACAGGTAGCGTTGCAATGCTTCTGGCAAGTGGTAGCCAACCAACAAACA
CAACCATATCCACCCAAAAGATTTAGTAACCCATCGACACACAATAGCATGTGTATTCAA
TCTTCTAAATAATAACAGGAGGAATGCCCTGTCTGACTGGCAGATATTGTACCCAGCCAG
ATACATATGGACAAATATTCAGTTGCAGCAGATACCATATACCAATATCATACAAAACAT
ACCCTGCTGCCAACATGCTCTCCACGATCTCCAATTATATGCCACAACCCACAAGTGCTA
GCTGTGAGCATCAAAACAGGCAGGTCAAAGCACATCACATGCTCCATTTGCCGGCAATCA
TACGCCGGCGAAACAAAAACCGAATCACAATTCATAAGATATAGGATGCATCCAGATGCA
GGCATACAGAGCATAACAAGAAAGGAAACATAATTTTCCATTGAAGTGAAAATAACAAGC
AAAAATAAAATAAACTGAGTGCGATTACATCATGTCTCTACTTATGGAACCGAGATAACA
ACGAGATACTTTTTTTTTACGGGGTCTCAAACACGGGAAATACCGTCTACTAAGCAAGTT
ACCTAAATTGCCACGACTTGTCAGTCACACGAGATAATCACAAGGCAGGAAGAAGAGAAA
TCAAACAAATGGATCGCCCGATGCCTCGACAAAGAGACCTTGCTGCAGCTGCCGGTGGGT
AACCTAGGGTGGGGTGGGGGTGAGGGGAGGGAGGACGACCATGAGAGTGCAGCTCCGCTG
AAGCAAGACGTAACAATAATATAGCATGGCGGCAACTTCGCCCTTGTTCTTTGTCTACCG
ATTGATTAGATCACAAGATGGAGCAAGCCCCCCTCTGCGCCTTTTTCTTCTTCTTTGCCT
TTGGTGGCTGCAGTACCACCTTTATTGCCGCATCAAATACACCCTTGACATTCTGCAAAT
CGACAAGGACCAGGAAAAAAAAACTCTGTCAGCATCTTACATGGCATTATGCACTAAGCA
AACATGTAAGAAGATAGCTGTACTAGTTGGGTCTTCGAGCTGCATTCGATGTAGTAGGGT
GCGCCTATTAACTTTTTTAGTTCCTCCCCCTACAGAATTTGGCATATAAAGTTAGTAACA
CAACATTGCCTCATTCAAGGGAAGGAGCAAGAGCAAGAAAATTAAGACAAAACGTCAGGG
AAAAAAAGATCAAGCCGTGCTGTAATGCCTCCATACCTGAGCAGTAGTGATAGGAACAGC
ACCAGGATGGTCCACAAAGAACTGCTTGTCATCTCGAAGATCTGCCAGGGCAAAGTACAA
GGTGAAAATGGAGTACAACTGACAGTCTGGACCATAAAAGGTCCAAGGGTAAAGAACACA
GGCATCAAGAACTAAATAGCCAACAATTCATCTAGGCATATACCAATATTCTCAAGAACA
GAAAGCAGTGGCGAAATACTATGAGGTTCACAGAAGCTTAGATTCAAGGGGTTTTCTTTT
TCTCATTTATTTTCATCTGGATAGCATCCCCTGCTATCACTTGTAGTATGACTGCCATTG
CACGTTACTGTGAATAACTCTACAAACACCTATGTGCCTAGAAACCCAACGTCACTTCTG
TCGTAAACACAACAGGATGTCAGATTTCTGTAGAAAAAATGTGGGCATGTGACGTTCTTA
CCAAGCTTTGTTCCCACGAGGATAATAGGCACACCTGGTGCATAATGCTTCAGTTCAGGT
ATCCACTGAAACATAAACGGAATTCAGGTTCAGGAAATACATAGGTTGAGTCCTTATATC
ACAAGTGCCAACTGAAACTAACTTGATGATATACTCCCTCCGTCCGGAATTACTTGTCAC
ACAATTGATAAAAAATGAATGTATCTAGAACTAAANNNCATCTAGATACATCCATTCCTA
TTTCAAGTATTTCTGGACGGAGGGAGTACGTATTAACCATAAAAAATAATCAGACCAAAT
TAGCATAAGTCAAGATAATAACCAAGGAACAGAAATTAGGGAAAACTATGTCATCTTTGA
TGGATAGGAGACTACTGGAAAACCCATTCAACAGTGCATTAAAGCCTATTTCTACCATGG
AACAATTTCTCACTGAAGAAAAAAAATCACTCATCAAACTTGACATACATGCCAGAAACA
TAATTTATCAGATAACTCATGAAGGTGCCCATAGAAATGATCTCAAATTGAACTTCTCCA
GGGATTTTCTGGAACCAGCAATGCGTAGAGCAAATATATTTGCGGATAATAAGGATCAGA
CAGTTACCTTCTTTGAAACATTCTCATAGCTAGCCTTGCTGATAAGCGAGAAGGCCAGAA
GGAAGACATCAGCTCCACGATAACTCAGCGGTCTCAGTCTGTTGTAGTCTTCCTGACCTG
TTGCAGTCAAAAAACATAAGCTTTTTTTACAACTCTGGTACCACAAACAAACCAAGCAGA
CAGAACAAACGTGTAGCCATCAGCAAACCAAGACAGAAAGAAGAGCTAGTTACCTGCAGT
ATCCCATAGCCCAAGGTTGACAGTGTTGCCATCAACCACAACATTAGCACTGAAGTTGTC
AAACACCGTGGGCACATAGTCCTGCCAAGAACAACAGTAGTAGTAAGAAAAACAACATGA
GTGCAGCCAAATTCTTTCTTCCAGGTTCAAGAAACAGCCACATGGCTGGCCGAGTGAATT
AACAACAAGTGCAGCCAAATTCTCTCTTCCAAGTTCTAGAAACAGCCACATGGCCGTCGG
ACGGACGACAGCGAGGTGAATTAAATTCTTGCACTCATGTAGCCATGCCTGAAGATAAGC
ATACCAAGATGGCACGAACACCAGACCCCATGTAGGTGGGTGGTCCAATTGGATATTCTA
CTGCTGCTGCTACCACCACTACGTGGTCACCATGACCCAGGGCTCCAAGCTAATCTACCC
CCAAAGGCCGCCAAAGCAGAGTAACTCCATCATGGGTGGTGGCATTATCTTGTCTTGTCT
CCAAGGTTCCTTTCTCTCCTCCGAGAGAGAGAGAGAGGGAGAGTAAAAAGAAATCTTTCG
TTTGAAAACGAAGCATGCGTGGAAAGGTAGGCGCTGCAATTGGTGTGGATTTGCGTGAAA
GAAACAAAGAATGGCACCCACCAACCATACGGATGGTGTGAGTGGTCGAGGGTAGGGTAC
TACCGCTATCACCGGCTAAAAGGAAAGGCTGGAAAGCGATCTCCGGCTGTTTGAAACGGA
TCCGCAGCCCCCACATTGCCGGCTGGGGGGTGGAGCCAAATTGGTACGAAATCACGAGCC
GGCGAAATCTCCCCGCTGCCATCCTTTTTCCCCCCCAGCAATGTTTGCCGTTCCTGCTAC
TGGATGGTAACGAAATCGACAGCGAAATTTCTCCCGTGCAGAATAAATGCTAATTTGGGG
GCTGATTTGGGGGTATCGGCAGAAAAGATCCCCATTTCGCTGGGGATGGCCGGCAACCCT
AGAGGAGAAAAGGTCGGAATTGGCGACCGCATTGCGCCCGAATTAGGAGCCGCCGGGGGG
CGAATCGGGCGGTAAGACGCCGCCCAAATCTAGATCAAGAACCAGCCTCTGCTTCCCCCA
CCCCCTAATTAGGAACGCACGCACGCACGCACAATAAAGAATCAAGCAATCAATCCGCAT
AAAAGGCGCAAGCAACATCTGTCCGCCTCTACATACACAAGAAGAAGAAGAAGAAGAAGN
NNNNNNNGAAGGAGAAGAAGAAGAAGCAGCAACCTGGCATTACCCAAGAAGAAGCAAGAA
AAGGAGGGACGTACGGTGGGGAAGGTGTTGGAGGTGTAGGAGATGAGCATGCAGGTCTTG
CCGACGGCGCCGTCCCCCACGGTGACGCACTTTATGAACCTGGACGCGCTCATCCTCCCT
CTTTCCCTCGCTGCCGGTGAAGCTGCGGGCGAGACAGGGGAGGAGGAGGAAGAAGAAGGG
GAGGTGGGGAGCTGGTTAAGATTTGGGGCCAGAGGAGCGAGGCCCAGGGCGGGGTGTGGA
GGTTAAGATTGGGGGGGCGCGGCGCGGGGGCGGGGACAAATGGAGGGGAGGGCGGCGTAA
TAAATTCGTATAGCAGACATTATAAGAAGATATACGAGGAG