morexGenes - Barley RNA-seq Database

Contig contig_2547149
Source Contig contig_2547149
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_2547149 (6219 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_2547149

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_36667	1	3312 bp	MLOC_36667.1	Available	Available	LOC_Os01g51410.1, FRAME:+2, EVALUE:0.0, 13101.m05364 protein glycine dehydrogenase, putative, expressed
CDS Structure of MLOC_36667

Contig Sequence (6219 bp)

>contig_2547149 6219 assembly3_WGSMorex_rbca.fasta
GCACCAGTACACGCCCGGCCGGCCCGTCACCGTGTCGGCGCTGCAGCCCAGCTTCACCTT
CCCGCGGCGGCACAACTCGGCCACCCCCGCCGAGCAGGCCGTTATGGCGTCCGAGTGCGG
CTTCAACACCCTCGACGCGCTCATCGACGCCACCGTCCCGGCCGCAATCCGCGCGCCGCC
CATGCAGTTCACCGGCAAGTTCGACGCAGGCTTCACCGAGTCGCAGATGCTCGACCACAT
GGCGCACCTCGCCTCCATGAACAAGACCTACAAGTCCTTCATCGGGATGGGCTACTACAA
CACCCACATCCCCGCCGTCATACTGCGCAACCTCATGGAGAACCCCGCGTGGTACACGCA
ATACACGCCTTACCAGGCGGAGATCGCCCAGGGCCGCCTCGAGTCGCTGCTCAACTACCA
GACCATGGTCGCCGACCTCACCGGCCTGCCCATGTCCAACGCCTCGCTGCTCGACGAGGC
CACCGCCGCCGCCGAGGCAATGGCCATGTGCCTCGGCATCGTCAAGTCCAAGAAGAAGAC
CTTCCTCATCGCCTCCAACTGCCACCCGCAGACCATCGACATCTGCAAGACGCGTGCCAC
CGGCTTCGACATCAACGTCGTCGTCTCCGCCGCCAAGGACTTCGACTACAGCAGCGGCGA
CGTCTGCGGCGTGCTCGTGCAGTACCCCGGCACCGAGGGGGAGGTGTTGGACTACGCCGA
GTTCGTCAAGGACGCGCACGCGCACGGCGTCAAGGTGGTGATGGCCACTGACCTGCTCGC
GCTCACCACGCTGCGCCCGCCGGGCGAGATTGGCGCCGACATCGCCGTGGGCTCCGCGCA
ACGCTTCGGCGTGCCCATGGGGTACGGCGGCCCGCACGCTGCCTTCCTCGCCACCTCCCA
GGAGTACAAGAGGCTGATGCCCGGCCGCATCATCGGTGTGAGCGTCGACTCCAGCGGCAA
GCCCGCGCTCCGCATGGCGATGCAGACCAGGGAGCAGCACATCCGGCGAGACAAGGCCAC
CAGCAACATCTGCACCGCGCAGGTACGCGAGCACCCCCACCCACTCACCAATTTTCCTGA
TAGTGACAGCACAATAGCTAAGAGTTCGTGCTACCTGATACGGGTGGGTGGGTTAGTGGC
CGAGCATATTATCATAAATTAGTGATTCATTAGATACCTTTTGTCACTTTATAGGCGTTG
CTCGCCAACATGGCGGCGATGTATGCCGTCTACCATGGTCCGGCTGGCCTGAAGGCGATC
GCCGACCGTGTCCATGGACTGGCTGGTACTTTCGCCCATGGTTTGAAGAAGCTCGGGACA
GTGACAGTGCAGGAGCTGCCCTACTTTGACACGGTCAAGATCACTTGCGCCGATGCTAAT
GCCATTGCTGAGGAGGCCCGCAAAAACGAGATGAACCTTCGCGTTGTCGACGCAAACACG
GTTCGTTTTCAGCTGATTTCTGTTGTGTTCCACTCCAACCGAATTAGTTCTGAGTTTCGA
GCATTAATTTCGAGTTGTGATATTGTAGATCACCGTTGCCTTTGATGAGACCACCACCTT
GGAGGATGTTGACAAGCTGTTCAAGGTTTTCTCTGGTGGCAAGCCAGTAAGTAGTCACCA
ACCAACTGCATAATTCCGCGTGCTTCATGTCAAATTATGTCGCAAATTTAAATGATGTTC
TGGCAACAACGCTTTCAGGTGGGCTTCACAGCTGAATCCATTGCGCCTGAGGTCTCAAGC
TCAATTCCTCCTAGCCTTGTGCGCGACAGCCCCTACTTGACCCACCCAATCTTTAGCATG
TACGTTTATTGTCAAAAGTTTGCATCTTTTGCGTCAATAATATTTTTTATTTATTTCCAA
ACAAAAACATTGTGCACAGAGCACAAACTTCACTAATTTGTCTGAATGTTATGAAACTAA
CTGAAGATATGCCGTGGCCTTGCAGGTACCACACAGAGCACGAGCTCCTCCGTTACCTGC
ACAAGTTGCAATCCAAGGATCTCTCACTGTGCCACAGTATGATCCCTCTTGGTTCTTGCA
CCATGAAACTAAATGCTACCGTCGAGATGATGCCCGTCACCGATCCCAAGTTCGCCAACA
TGCACCCATTTGCCCCTATTGATCAAGCTGCAGGCTATCATGTATGGACCATTTTGTATT
TATTTAGTTTCTAATGAAAAAAAAAATGAACCAATGTTCCGAATTGACTTGTTTTTTTTA
ATGAAGGAAATGTTTGACAACCTGGGTGATCTGCTGAACACCATCACTGGTTTTGATTCG
TTTTCTTTGCAACCGAATGCTGGTGCTTCAGGAGAGTATGCTGGACTGATGGTTATTCGG
GCATACCACAAGGTATGCCATGACAAATACGCTGCGCTAGTTCTGTTGCTTTGTTTCGCA
CTCTTTGTTTATGAACCATGTGCAAAAAATGCAGGCAAGAGGAGACCACCACCGAAATGT
CTGCATCATTCCCGTCTCTGCGCACGGTACAAACCCTGCAAGTGCTGCTATGTGTGGAAT
GAAGATTGTTGCTGTTGGAACTGATGCCAAAGGTAACATTAACATTGAGGAGTTGAGGAA
AGCTGCTGAAGCAAACAAGGACAACCTGTCTGCTCTGATGGTACTATTTCTAATTCTACG
CTCTGTCAATTTGAGAGTTTATGACGAATTGCGACCTCAGTGTGAACTCTTTCAGCTCAG
TTGTTGATTATTAAATTTTGAGCTACCATTCTGAATCTATATTATACTCCCTCTGTACCT
AAGTAGTTCTCCCCAACTACAATTACTTAGGTACAGAGGGAGTAGCTATCACTATATCAA
GTGTGATGGAGCAATTAGGAGACTTTCACTGTCTTATTTTCTTGCAGCTTCTGATCTACA
TTATATAACTAAAATATTTACTATCCATGGCTAGAAATTACTAGATTAATCAGAAGAAAA
AGAGAAAAAATCTACACTGCTTCTTTTCGTGTGTTCAGATTGTAGTGGTGTGGAATAAAT
AATTTGATGGAAGCATGTTATAGTATCGAGCCACACAAATTGTGTGGGAAATTGGTGAGT
GTATGTTAAAATGGAAATCAGACAACTGCTTCATATAACCTTTTACATGAAGCTATTTGA
ATTAATTGATATATAATGGAAGAATATGTCCAAATACCTTATTTCATATCATCATATATT
GAAGCTACATATGGTTGATGAATAAGAGTAACTTCTTCTTTCAAGCAAGTGATTAAGAGT
AACTTACTTGGAACCATGGAAAATGTTGAGTTCGCCGAGGATGAAAGTTCATTGAAGAAA
TGTTTGTATCATTTTGTGCCAAGAATAACAGAATATTGTGTGATTTCTTTGTTCTTCAGG
TTACCTATCCTTCAACCCATGGAGTCTACGAAGAAGGCATTGATGAGATTTGCAGGATTA
TTCATGATAACGGCGGTCAGGTCTATATGGATGGAGCTAACATGAACGCTCAGGTGAGGT
CACTGCACTTGGTTGTGCCACTCTGTCTACTTGTTCCTTCTGCAATTACCCCCTTCAAAT
GTTTTATACTAGTAATAATGTATCTTGGCCCACCAACTTATATATCTTGCCAATATAATG
AAGTTTATTCTGAGAAACTGCAAACTACATATTTCTATTAGTTTCTTTTATCTACTTCTT
ATTTGTTATGTTAAAAAATGGTAATTGTTTGTACTTATCCGGTTTATCGGTGCTAAGCTA
TGTTTTCTGTAAGAAATATGTCTTCAAGTTCACCTGAACCTAAACTTTTTTAACTGAAAA
TCTTAACATAATTGAGGTATTGTGATCTGGTCATTTTCAGATATCTCAAACTAAGTATCC
TACAGAGACAAATGATTCTCTTTAACTTACAAATTTTGTGTTTTTACAGGTTGGGTTGAC
AAGCCCTGGTTTTATTGGAGCAGATGTTTGCCATCTTAACCTTCACAAGACATTTTGCAT
TCCACATGGTGGAGGTGGTCCTGGCATGGGTCCTATTGGTGTTAAGAAGCACTTGGCACC
ATTTTTGCCATCTCATCCAGTGGTAGGTATCCTATTTTTTAATGTTATCACTGCAAATAA
AATCATATTACTCAGATCTCACTCCTAATAAAATAGCACCCAATGTCCAATAGTTAATTT
GAAAAAACATATGAGCTTGATATTTGGTAGTGTGTCGTCTCTTTGTATTCTTTCCTTTTG
CACGACTAAATTATTAAAAAAGTGTTTGGTGATGATGTGTTAACTACTGGAGCCATGTCT
TTAATGTTGAGTACTATAACCAAAAGAATGAATCTTAATTTCTTTTGCTTGACTTTTTTC
GTTTCTTAAAAGAAAATGCAGCTACATTATCAAACTAATTTGGCAATTCATTAGATCCCC
ACTGGTGGCTTCCCTCTCCCTGAGAAAACCGACCCTCTTGGTTCCATTTCTGCTGCTCCA
TGGGGATCTGCTTTGATTCTTCCAATTTCGTACACCTACATAGCCATGATGGGCTCTCAA
GGACTAACTGAAGCCTCAAAGATTGCGATCCTGAACGCGAACTACATGGCAAAGCGTCTG
GAGGTACTTGATGTTACTCATGGTCACACATTACATGGCCTTTACTAAAATATATTTATT
ATTGAACTAGTTTTCTAATTTGTAACGCATTTTGCAGAAACACTACCCAGTTCTTTTCCG
TGGAGTCAATGGAACTGTTGCCCATGAGTTCATTATTGATTTAAGAGGATTCAAGGTACT
TGTCCGAACCATGTGAGCACTTTGTGCCTCGTTTTTTTCCATATCAATTCTCTGACTGGA
TCTTGGAATTTTTGACAGGCAACTGCCGGTATTGAGCCCGAGGATGTGGCGAAGCGCTTG
ATGGACTATGGATTCCATGGACCAACCATGTCGTGGCCTGTTCCAGGCACACTTATGATT
GAACCTACTGAAAGTGAAAGCAAGGTAGGCATGTCTAATTCAATCGAGTGCTTGTCATTG
CACCAACCGTTGGCTTTTGCATTAGCTTACTGCCACATCATTTATCTGGCAGGCTGAACT
AGACAGGTTCTGTGATGCCCTTATCTCCATCAGAGAGGAAATTGCACAGGTAGAAAATGG
AAAAGCAGATGCGCACAACAATGTCCTGAAGGTAATCTACTCCGAATGGTTTCCATAACA
AATCACAAACATTTTCCTAACAGTTTGAGCTTTTGGCTGAACTGTCTGATGCATGCAACT
CAATGCACATGAACAGAGAAGTTAATTTCTTTTGCCTGTTTTGTTACGCAGGGTGCTCCT
CACCCACCCCAAATCCTGATGGGTGATGCATGGACTAAGCCATACTCCAGGGAGTATGCT
GCATTCCCCGCGGCGTGGCTTCGTGGTGCCAAGTTCTGGCCAACAACATGTACTGATAGT
TCCAAGACCTTCACATAGCTTACATTTTGTTGTTTGACGTACAAACTAATAATTTCTCTT
GTGCTCTTGTCAGGTCGTGTGGACAACGTGTACGGGGATCGCAACCTGATCTGCACTCTG
CAGCAGGAGGTGGCGGAGGAAGCTGCAGCTGCGACCGCGTAATCTTTTGATGATGACGAT
CCTGGTGTGTGAACTGTGATACTGTGTCAAGAAGTTATGATGCTTCCTGTAGGAGGGAAG
CATGCTTGCTTCTAAATCCCTCATGTACTGTATATATTCTCCTCAGATGCCACCTTCTCC
TGTATCCTCTGTACCCCCACGCTGCCTCCCCATTCCCATTTGAAAGTGAAATTAGCTATA
TTGGCTAGCATTTCTACTCTTCTCTGAATACAGGAAAAATAATGGAGATCCGTTTTGATG
TCCTAGCCATACACTGAAAGAAAATCTAGTTATTTTTAGATTGTTTTGATTCGCGGGCTC
ACCCTGTCCATAGCTTTGTCGTGGCTCTTATGTGAGTGGGAGGACTAGATGCCCCCTTCT
AGGTCAGCACCCATACGAGGGCTTGGGCCCTAAGTGATAAAGCTTGATGGGCTTGGGCCT
TCAACACTCCCCTCAAGATGGATGGTAGATATCTATCATTTCCATTTTGTCACATGTCAA
GTTATGCTGGAATTTTATTTATTTTTGGGCTAGCCAAATATATAATTTCAGAATTTCCTA
ATAAATCCTAGATGCCCACAAGCCCATTTGTGCAAGGCAAGAGGTGAAAATGTTTAGTCC
CACATTGCTAGTTTAGTGGGAGTTGGACCTCCTTATAAG