Contig Data
morexGenes
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Map Locations of contig_2547129 (5465 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_2547129

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_36655 3 3882 bp MLOC_36655.1 Available Available LOC_Os09g04110.2, FRAME:-1, EVALUE:0.0, 13109.m00335 protein coatomer alpha subunit, putative, expressed





CDS Structure of MLOC_36655






Contig Sequence (5465 bp)

>contig_2547129 5465 assembly3_WGSMorex_rbca.fasta
GTCATTGCCCCAAGCGCAAAGATGCTGCCAACGGTTCCCCGGCCTCTCCATTTATGCCCC
ATCTCCACCTCCCCCGCCCCACTCTCCCACCGGTGTGGGACAAAAGAAACGGCACCAAAA
CTGAGCTGCGGGCTTCTCATGGGCCGCCCTATCGTGCAGGGCCGTTTATTTCTCTATCTT
GGGCTGATCGGCCTGCAGGTAACCAGAAGCTAAGATCATACCATCAAGAAAAAAAAGTTA
ACACCTGATGTTTTTGCCCAGGAAAAGGTGAACTCCATCATTTTTTAGCGGCGATGCCGC
GACGCCTTCGTCTGTCTGCGAGTCGGTGCTGCGACGACCGTCAATGCTTCAACGGATGCT
GCGACTACGACATAAGTGGTGATGCTGCTCCGACGGCTCGACGACGTGCTGTGAGTTGAT
GACGAGCGAGTACAGATGTTGTTTTCATTTGCATACGTAACTCATCGATAGACTTCATGT
ATTACTCACATATATAACCTGGCATCAACATATAATCTCACTGTGAGAAAAACTATGATA
CATCAACGGGGTAGGAAAAGTTTGCATGAGTTGATCATGATAAGTCTCAAGCATAACAGC
ATCCTCAAGGCAAGCAAAAACCGGGGGTATATGGTATGGAGATAGAAAAAAGTATGAGAA
GAACTCCGACAAAACCATGTACTATTATACTTATTCCTTACACAATCAGTAAACCTCCTG
GTAAAATATAAGACAAGACAGGCTTTACGAGACTAGAAAGAATATAGGGGAGCTCTAACG
ACTAGCCTCTTCTGCTCATCTCGTCTGTGTAGGGGAGCACAGGAGGCCCGAGGCGTCCGC
GCCGACCACCGCCAGCTCGCATATGGTACAAAGCTGCCCTTCCGTGGCAGGAACAAACCG
GGATCCGCAGTAAGGGCACGAGATGTCCTTTTGGCCGCGGTAGATGGGGACATACGTCGA
GCCACAGACGACGAACGGATTTCTGTAGTCGTAGTTGAGCTCATGGCTGTCCTGCTTGCC
GTTGCACTGCTGCTGCACCTGCCGAGCCTTCTTCGCCTGGACCTCGTTGGGGCTGTTCTC
GAGGAGCAGCCTCGCAAAGTGCTCGGCGGTCGCGAAGTTCTTCTGCTTGTAGCATAGAGC
CATGGCGTTCGAGAGCACGAGTCTCATGTGAACCCTCTGGAGCTTGCAGTTGGTGAAGTA
GGCCGCCAGCTCCTGTTGCCGGTTGACATTGTCCTTCAGTTCCTTCCTCTTGAGTTCCAT
TCTTAGACCAAGAACATACTCCCTCACTATCTCGATCAACTCCTTCACTTCATCAACTTC
TCTCCGTGAGTCGACGACAATAAGGGGAATGGTATGCAAGATGCTGAGGAATTGTCTCAG
CGCTTCTGGGAACTTCCCCTCGGTTGTGGCTTTGTAGGCTGCCTTGAGTCTGTCTTCCAT
TTGTGAGAAGGTGAAAATTAGTGCAGGAGGGCCCCTCACGTTAGGACTCGATGACTCACT
CCAGCCTTTCTCAACAGCAATTGATATAACGGGAGCAGTTGCAAGTGCGCGAAGATATGA
ATGACTGCCCATGTGCAGATCAAGAAACAAGGGCTTCAGGGGAGCAAAGTTCTTGATGCC
CAACTGGCGGCTGAGCAACCTCATTGCAGTGTCAAAGTTTCCTGCTGCTGCATGCTCCCC
GGCAAGGGAAGATTTCTGAGTCCAAATTTGGCTGACAGGCATTCCTGGTGCAGGAGCAAC
AAACACAGTAGAGCGAGCATTTCCAGCAGCTTTGGGGGTCTCTGATTCAGGCAATTCCAG
ATCTTCAAGATCCCAACCACCTTCCTCGCCATCCTCCTCATTCGCTTCACCCTCCTCAGG
ATCAAAACCATCACCCCCATTTGCTAATGCATCACTTGCATCCACAATATCCAAGTCCTC
ATCACCCCAGTCAGCACCAGCAGCTTCATCGTCTTCCTCTACTTCTGCTCTCCCAGTAGC
ATCCAGCCCACCCTCAAATATGCCACGCATCACCCGGAGCAATGGCCAATCAACGCTGGA
TATGAGAGGTGCCGGCGGAATTAAAAGTGAGCGAGTTTTTCCCTCGGGTAGAGAAGGAAC
ATTCTCACCCAACTCAGCAGCAAGCCTTTCAGCAATTTCAGTGAGCCCATGAGTGGCAGC
AGTAACATAGGCTAGAGGAAGCTGTCCAGCATTCTCCAGGATCTCAGCTCGCTTCCTAGC
ATCCCCAAGATATAATGCATTGTGGAACTGACCCATCAAATTGTTATTCTGTCCAGCAAT
TTTGCACATGAAGCCCACCTTGTCCATGTAACCAGTAATAAGATACAGAAAAGTCAGCCT
CTCAAAATTCTTCGTCCGCTGGTATGCATATTCCACAATACCAACATTCCCCTGCCTCAA
GGCCTCAATTCCCAACCTGTACCAGTGATCCTTGTCATCAATCTCTTTTGCAGAAGCCAC
TGCGATTTGGATGTTACCACTTTCAAGAGCTAGATTAAATCTTGTCTTCTCATCTTTCAC
AAAGTGGAGAGCAACTTCTGGAAATCCTTTCTGTTGCAAATATGAAATCACTGCCTGCCC
ACAGAGCTGTGAGCTCTTAATCATACTCATAACATGGTCATAACGTTTCCGGAGAAGGGC
GAGCTTGAAAATGTATTCAGAAGCATCGACTGTTATCAGCTTGTTCTTTCCATCACGATC
AAGACAGAAAATATTGTTCCCAATAACCCTTGTTATGTAAACAGGGACATCAAGAGTCTT
TATGATCCCACTGTCTCCATTGGGAAGACAGTATTTGATATGGTTCAAAGTAGAGTAAAT
AAAAACACCGTTCTCATCCCAGGCACCACTTTTCACACGAATGGTTTCATGCAGTGTAGA
GCGATGGACAAGCTTCTTGCTAGCTATAACTACTGCATGCTTGCTCAGCAGTGCAACATA
CTCCATGTCACCGGACCAAACTACATATTTAACACCAGGTGCCTGGAGTTCACCAAGAAC
TAGCCTTTGTTGTAGATCAAAGATGGTCACACGATCTTCAGCTTTGCACAACAAACTACC
AGTTCCAGCATAATAAATTGCATCAGTCGCAATAGGAAGAGGACTCTTCTTCACAATTTC
ATTCTTAAGATTCTTCACCAAAACTTGATTGCTACTCTTCTCAAGGACAGCAAACCTATT
CCGTGCCACAAAAACAGCCGAGCCACCAGCTCCCTTCTTTGCCTCTTGCAAATAATCAGC
CCTGCCAGCAGAATCCTTAGGAACAATGTACAGATCATATGAGCCGCCGTCCACATCAGA
GCAAATCAACACAGCATTTTCCGTTGGACTATAAGATAGTGTCCTGGGTGACTGGTTCAA
GCTGACGGATCCTGGTCTTCTTATTGGAGCCACCTGAACTTCCTTCTGGGTGGAGTACTC
AAAGAACCGGAGGAATCTGTCCTTCACATAGAACACAGTATCAGCACTCACGCTGAAAGC
TGGGCGTTCCCTCTCTAATTTAAACACAATCATGCCACTGTCATGACCAGCAGCAAGAAG
ATTCATTTCAGGGTGGGCAGCAAGGATCCAGAAACGGTCATGTTCCCGCCTAAATGTCTG
AATGCCGGTTCGCTTTGTGGCATCCCAGATGCGAATGCTTTTGTCCTCTGAGTTGGACAC
AATGATGTCTTGCTTCGCATGGAACATCACACAGGACACATTATTCATGTGCCCCCTCAA
AGTATCAACTTCCCAAGCCTTGGTATCTGTAAAACAATATCAAACATTATTTTATTTTTC
GTTCAATTCAACCATCAACGAGTACTCAATGATAAAATAATTAGTGCTATACTCGACCTT
CAATTGACATTTCTCAGGTTGAACAAACAAGGGTGATTTTATCATTTGTTTATAACTTGC
TCAGTTCTACCAATATGCAGAGCGTTTTACTGGATATTCAATGGATACATACATGTAATC
ACTCAGAATCAACAAAAGGTTAATTTGATAATTATGAAACATGTTTCTTACGTTCAACTA
GTTTTGGTGACAACTGATAATTTACTTAACATTGTTTATGATAGACTAAGGAGTAAAGAG
TAAAAGGTTCTGTACAAGTAATATCACTTAAACAGAATCAGAAGGATTCACAGTAAAATG
ACTAATTCACGAGCATTGCTTCAAACTGTCATACAATAGAATAAAATGATGTACAACAAA
ATAAAATAAACCAGACATAAGTAGTTAAAGAAGTGCTGGCACTGTTACCATTCATTCTCC
ACAGCTTCACTTGCCGGTCATCTGCCCCAGAAACAATGAGTGGCAATGTGGGATGGAAGG
ATGCCCAGTTGACACCACGGTCATGGCCTTCCAAGACATATTTCACAACCGCATCGACGC
CCCCAAACAGATCAGTGTTCATCTGAGTGAGACGCATGATGTCATCTGCAGGTGACACCG
TCTTCTTCCTCAGGGCACCAATATCCCAAACACGAACAGTCTGATCTAGCGATGCTGACA
CAACCAGGTCCTCCTTGGGGTGGAAGGACGCGCACATGACATAGTGATTATGCCCAGTGA
GCACAGCCACACAAGTACGTGACTGCCAGTTCCAGATACGGATTGTCTGGTCATCGCTGG
CACTTACGATCCATGGGTACTCATGGTGGAACTGCACAGTACGAATGTAGTCGAGATGCC
CAGTAAGCGTAAACAAGCAGCGGTGTGTCTTGTAATTCCACACCTTAATCTTGTAATCGT
CACCTGCATTGCATCACAACCAAAAATCTTAGTTCAAGCTTTGTGAATGCTAACGAGCTT
GCATTGGATTATGTTACCACCTATCCTACATTCACTCAGTGTTCAAGTATTGACTCACTG
TTAAGCTGATAACTAAAACATGAACCAGACTAACCAGAGTGCATCCCAGTGTCGTCACCC
ACACAAATCCCATCATGGTTTTGTGAATGCTAATGAGCATGCATTGGATTATTTTGCCAC
CTATTCCACACTAACTTTCAACTGGCTGAAAACCTACGTTAACGCCAGTCACTAATAACA
ACCAAATGGCACCTGATGCTCGCAGTAACCAATTCTAGAAACAGCAAAGATCATAAAGTG
AGCAGCAGATCCGACCAATTTGGGATTCCTCAACAACCACCTCTACACATCAAGCGCGAT
CTAACAGCAGCGTCGACATCTGACGGCCTCGAAACCCGCGCGCAGGGCCTCCAATCCAAG
TGAAGGCCCGGGGCCGTAGCGCGGAGTTCCGTGTCAATCCGCAAATGGCAACTCACGTGC
GAACCGATCGAGCCGAGTGGTGGGATCTAGCAGGGAAGGGGAGTACCTCCGGAGACGAAG
AGGGGCTGGGTGGCGTGGAAGTGCACGCCGCGGACGGGGCCGTCGTGCTCGTCGAAGCGG
TCGAGGAGGGTGCCCATGCGGTAGTCCCACATCTGGATCACCCCGCTGTGGAGGCTGGCG
AGGAT