morexGenes - Barley RNA-seq Database

Contig contig_2547119
Source Contig contig_2547119
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_2547119 (7069 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_2547119

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_36647	2	2009 bp	MLOC_36647.2	Available	Available	LOC_Os08g13360.2, FRAME:-3, EVALUE:1e-177, 13108.m01428 protein kelch repeat protein, putative, expressed
CDS Structure of MLOC_36647

Contig Sequence (7069 bp)

>contig_2547119 7069 assembly3_WGSMorex_rbca.fasta
CACCTCTTCTATCGATCTCTCATAGGAAGTGCATAAAATTATGGTTTGATAACTTGAACA
ACAGTGTCCCTCAGGACGATAACATCGGCGCAAGCGCTCGCACCACCACCGTCACAATTA
GTTTTTCTTTATATTGTGTATCGGTGAGATGAATGTAAAGTCACAGTTTGACTGAATGAA
ATCTATGGTTTGGTCAACTCCGTATTTTTTTCTTTGAATGCACATAGTAATCAAAGTAAA
TAAAAAAACATCAGTGTTTATTCTTCGAACAAAACACTCATTGCAAACGTCTCATGCTGA
ATATGCGTATGCAAATTGAGAGCTATGGTTCCTTCGCCACAAATTTTCACGCGAAGGATT
GGTACGTCGCATCATCACAAACAGTTTTGTATGATGACCATAGGCGATTTGGTAAGATTT
CCATCTGTCATATTTGGTATATTACCATTTTTCAAATTGGAAATATTGGCATTGTCAATA
TAGTAGCATTGCCATTTGTCAACATTGTAACACACACATTTATCAGATTTTGCACCTAAA
AATAACTAGTAAGGTCCACTTTTGCAATTGGAATTTATTAAACATAGATTTCAATATTAT
ATTAAGTTGTCGTTCTATATACAAAATAGTTCAACTCGAGAGCTGAACCGAACAAACATT
TTCCCAATTTTTGCCAACAACGTACTAAAATAGCTANNNNNNNNNTATATACTAGCTAAT
TTAAAGTACGTAGTACAGTTCAATCATATGTATAGTTAGGTGAACTGAACTGAATATCTC
CTAAATACTACTATGGAGGGGCTTTGTACTACTTCTAGTAGCCTCTCCTCTGTCCAGCGC
GATCAATAAGAGGTCGAGGAGGAGGAGGAGCCTACCGACAATCTTGTGAGGTCGAATTCG
TTGTCGTTGTTACCCTCCACCTCTCCTGACGCACCCCTCGATGCAGCATGACTCGGCCTA
AATCTCCGCATTCCGCGCCACTACTGCAGCCATGGCAGCGGTGAGCATCTTTGTGTGTGT
GACTTGGCGCTCCATCTCTTCTTCTAGGAAGTTGATGTAGCACGCAAGGTTGCTGACGCA
ATAGTCAAGTGGCTGGCCTTTGGAGCCCTCCACCTCCTACCTTCAGGCCGCTATGGCAGA
GCGGGTGATGGCCTTGGCGGCTAATGATGTGGTGGCAGCCAAGGTGTCCGCCGATGGGGT
GGCATCCATGGCTGCCGCCGGCAGCAGTTGTCCTCGGGCAGCAGTGGCGGAGCGTGCGAT
GGGTGGCATGGACACAGACTCCATGCACACTTCATGCTTCAAAGGATTGTGCCATTGGCG
CGGCGTAGCCTCCCAGCTGAAGTTGTCCTCTAGCGGAGTAGCTGAGCGATGATGATGGAC
CAATGCCATCGACAATTGGGAGAAGCAAACTAGATAATCTACGAGGAGGGAGGGGATGAA
TGCGATGTGGATTCACCGACTATGATGATTTATATAGAAGGCTGACAAGCATTGGTGTTT
TGGAGAATTTCGCCGAGCCCGGCAGGAAGCCTACGTCGTTGCGCGCGAGAACCTACGCGA
TTTGTGGGGGAACGGGCTCACCGACACCACTTCGAGACAATGCGTGCCCAAAAGATGCAT
ATGTGATGTTGAAGCGTGCACACGAATCCTCCGGTGGCAACGCAGTGACAAGATGTGAGA
GGAGAGGAAGAAATGATAAATACACAAACGATCAATAGTAGAAAAATGGTGGCATTTTAT
TACATGGCAAACAATCATTCTCTACGCACCGCTGCGAAAGATCGTTGGCCCACAGTGTGA
TGTGAAACACAATATCGTTTCCCAGGACGTCGGCGGCTCACCGCGGCTGGCCTGCTTGTA
TAGGCCATTCCCTACGTGTTCAACTGCTCTATGCATGTGACTGCTCGTGGTTAAGGAGAC
CGCGCGCGCTCTTCTGGTGTCCCTTCGCGCTTGCTCTGTTGGCGTCCCTCCATGTGCGCT
GTGAGTGGTTGATGCCGTTGCACGAACACATACGTTTGGGGCGCCATGCGCATGTGGTTG
GGCTGCACCATGTTTGCCGGGTATCATACACATCTTGTTTGCCACACAAGCATGAATCGA
CTGTTTATTATCAGTTTTCCCACACAATTCTAATTACTGACTTGTTTGCCGGGTATCATA
CACATCTTCTTACGTCGAATCGTTTGTGTTATTTTGACCCATCGCGAACAGTTAATCCAA
GTGACTTGTTTGCCGGGTATCACACACATCCTCATTTGTTGAACCATTTGTGTTATTTGG
CTCATCGCAAACAGTTCATGCGAGTGACCTGTTTGCCGGGTATCGCACACACCTTGTTGT
GCCAAAACCGTTTGTCTCATCGCAAACAGTTCATATGGAACCATTGTATGCCACTCATCG
CACGTGTAACTCTTATCTGAATCGTGTGTGATGGGTCTGCCATCGCACATAGTTCTTTTT
ATTGATGACGGTTTTATAACCATACTGTTTGTGATTGGTGCATCGCACACAGTTTCGTTG
AAGTGTCTCCTATACATGTGTCGTTTTAGGACCTCCCTGAAGTAGTGAATAGGCACATTT
ATGGCACAAAATGGTTTTCGTCATGTTAAGGGCCCACTTTGTAAATTGGTCATATGGTCC
TACATAGATTTGAGTCTGCTAATTCCCGAGACTCACTAGAACATTTTGGCCCCTTTGCAC
CTTTCGGTGTGTTAACCACCATGTTATATTCTGGCCCAGCTAAACCGAAGTTGTGTCTCA
GACTTTTAATGACCCGTGGCCTGTATTGGTCGTGCAACATCTGTGGTTAATAACGATGTG
TGTTATGGCCCGTTGTTAATGTGTGGCCACAATAAGTCAGTGCTAATAATGGTCGATGAA
GGTTGTTGGCCTATTTAAGGAGTGAGCCCATCTAGTCCATTAAGGGCCCATGCGAACTAT
CATCTACCTTAAATTAATGGGCTAGTCTAATAACGGCGAGCACTGCCTACCTATTTGTTT
TTATGGAGGCATGTAACGTTTTGGCCCGTTGAACTTCATCAAAGCTTTTGGCCTTTCCAA
CAATAGATTATATAGTAACTAATAATTATCCTACTTTATACAATCCCTTGCCAAAAAAAC
CTAGACTATAAAATAAAGAAATTACGACATAGAAACAAAGAATAATCATACACTATACGA
TAAAGAAATTACTGCATATTACATCCACTAGGGATCAAAGGTTGACACCACTAATAATAA
AACGCAACCAAACAGTAAAATGCATACAGTGGGCACATAAACCTCATACATCATGGAGGC
AAGTCAAGACAAGTTAGCATTTGAACTATGATCTCTTCTGAAAATTGGATTGCCGGATTC
ACACAACACGAACTGCAGTTTACTCAATCTCCACTTTCTTTCTAACTTCCAAGCCCACCA
CCGCACGTCGTGATGACCAATCAGTCAACCTTAACACGTGGTCTGGCCTGACTAGCTAAT
GAGACATGTCTGATCTAACACATTGTACTAGACAAGTCGAGCTTATCCATTGTGGGAGAA
AAGGCCCACGGTGGCCAAGTGCGCGGGAAACATTTTGCGGTGCAGATCGCGTAACTTCAT
TGATAGATCGACGCCAAGATGGTGCACACGACTTTGGAGGCATCCCGACAAGGAGTCCGA
CTGCGAGCAGATGTTGTTGGGGAAGCTTCGGTGAACCAGTTTCAACCTTGCTGACCGAAA
GACAATGTACATCTCTCTGTTGGTCGAGGCACAACCAAGCTTGAAGATTGGTTCACGGGC
TACCGACAGTTTCACGACCTAGGGGTTCCCCACCATGGTAGTTATCGATCTGAGGACCCC
CTAGGTCGGCTCCGTCCTGGGGCACGTTAAGCAACACAAGACCCGCTTTACAGAAGACTC
CAAAATACTTGTTGTACAAGGCAAAGATACTAGAGCCATGGGGGACTCCATCTTCATCGA
CATAGTTGACTAGGCTCTCTAACCTTATGGTCCCCGATATGCTATATAAGCTAAGGTTCG
AGATAGTCGATAGGCAGTTTAGAATCCCTTGGTTCATACATGTACTTTGTACACCCCAAT
CACAATATACTAGGGCAAGAGGGTATTACCTCTTCTCGAGGGTTGTAACCTGAGTCCGTG
TCATGTTTCTCCTCCAACCTAATTGCTACGCCGGGATATTATACTGGGGATTTGCTCGAA
GTCATCATCATCGCCAACCAAGATACCACATCACACTCATCCACGAGCGCTGCCCCGCCA
TCCTCGAAGCAAGCAGCGATAGAACCTGCAAAACAAGACAACTTTAGGACACCAGGACGA
TGCCTTCAAGAAGGACCACGACACAAGATGATCCACCATCATCCATTTCATAAAGGCCTG
GAACAAGTATTTTCCCTGGAGTTCGAGAGAGAAGAGCAGACGCCGCGTATCATCGTTGGC
TCCGGCAGAGCAAGGCCTTCTCATCGAGCAGCCAGATATCCTCAAAAGGACAAGATCAAA
ATGCACCAGAACATTATTAGGTCAGAGGTTAAAAAAAGGTGCTTGCACAAGTTGCACCTC
TGAACAGAACATGGTGCTGTAGGTTGCAGCATCATCACTCGCTATCGCTGCTGCCAACCA
GCGACCACAGTGGAAAATGACGTGTCAGCAACAAGTTTTGACTAATAAAAGTAGTGCGTC
TTTGTGGTTTTCTCACCCATTTGCGTCGAAGTAAATTATCTGTATTTGCATTATGTAAAA
AAATGATGTACCAAGTTGATAATATGAACCTTTTGATCTACCAAATCAAAGGTGAGGAAT
TTCCATGTTCTGAAATTTCAATTGATCAAGTTGAATATGGAATAAATACATCGGTCAGAG
CTGCAATTGCGGAATTCAAATATTTAGTGTGAACGAATTACATGGATGCATGTTCTAATT
GAAAAAAAAGGTATATTTTATTTGAAAGCAACAATACTGAAAACAAAGGGACTGTCAATC
TTCAACTAAAGAAAAATAACTGACATATTCTAGATTCAGAACTATTCCCAGTAGATTCGT
TTAGCATGATTAGGGTGACCAAGACACCATAATGAGCTCAGTTCAACACAACATGATCCC
CACGTGTGGCAGTTGAATCGCTGCATTTCTGACTGGGATGAAAAGCTCAACAGCAAGCCC
CAGATGGTGCATAATAATCATCAATTATGTCATTCTAGTTTATCATTTATGATAATCAAA
TCCTTCTTTTCACAGCGATAATGAAGTCATCACAAGTAATACGGATCGGAGGGAATAGCA
ATCTTTACTCGGATGATATTGACAGACATTCTTTGCTAATATACGAATTTGAGAAAGGAT
ATACATCTCAACACATACGTGGACAAACCCACTCCACATCACCGTTGCTTTCAGATATCA
GTGACAGGTCTTGCACCCATGCGCACTTGACAGTGAAGAACCATTTTTCAGCATCATCAC
AATGTCCATTCTGGCAGCTGAAATTAACAATATTGAGATCTTGATCATCTAAATATTGTG
AGCGAGATCTTCAATTTACTATCCAAGTGTTGTGACTAGAAAAACTACACAATACTGCAT
TCCTAGATCTAAACAGTTATCTCTAGGAAAATATTCATAGGAAAACATCATACAGGTTCT
AGAGATGCAGCACAAGCTCCACTTGATACAGCTGCCCATCAAACCTCAAACCCAAGGATT
CTGCAGGATGCATAAGTGCATCAACCATTCCACCAAAAACATACACACGGTAACCAGAAG
TATCTACACATGCCCCATGGAAGGACCGGCAATTTGGGGATTGACCATCAATCCTTAGTC
TTTTCCACATCCTCTTTGCCATTTTCCTGGTACCTGACTCAAACTGAAGTAATGCTGGTA
TATCTAAGATCCAGAAATCATCCATCCGCCGTCTTTCTTTGTCTTCCCCACCATATACAA
GGATCTTGCCACCAAAGAGAAATGTTGCTGAATGCCCAGCCCGGGGAGAAGGCAATTCAC
CAAGAATACTAGACAAATTGTACTTTTGCTCTTTCCATTGCAGGAAATGATCACCAATAT
CAAACAGCCAGACATCACTAAGCACCTCATATTCTGATCCTCTACCACCAAAAAGAACCA
TGCGCCTATCACCAATCCAAGTTAAGGTGTGGCCAGAACGAGCTGAAGGCAAAGGTCCAG
TGTCCCCCATTTGGCGCCAACTGCCAGATCGAAGTCCATCGGAGAAATCAAGAAGCCATG
TATCACCAAGCCGGCTTCCATGCACCCCTATCCCACCGTGAATCACAATTAACTTATCAT
CTATGCAGCAGGCTGCATGGGCCCCGCGAGGAGATGGTGCCAGGGGGCCTATCTGAAGCA
GTCTCCATGAGATCATCATCCTGCCAGGTTCTTCGCAAATTATTTCGCCTATCCATGTGT
CATTCAAACGAAGCCCACGGTCATTAATCCCGCCAAACAGGACTAGTGCATCACCAACGA
GAACACATGAATGACCAAAACGACCACTTGGAGTGCCAGAGGCCAATTGCTGCCAGCTAA
GTACATTGGACGATCCAGTTCCGGCTCCATTTCCAACATATGTCGCCCAGATATCATCAA
GATGACGACCTAACTAGAGCAAAAGAAAATATCAGAAAGCATACAAGATTGGGATAAATC
GGAACAAACATAACCTGTTACTTTTGCCCACGCTTTTTGGTCTGTATCCAAGCCAATGCA
CACACTATAACCAACGGAAACCACCGCTATTTATAAGGCTCACAGTAATAGATAACCTAA
ACCAATGGAACTAGTGAAACTTCATATTGCTAATTATCGACAGTGTCACTTATAATTTCT
ACTAAGGTACACACGTATTGACAGAATAGTAGCGCGGTACTGGCTTTGGGGGAACAAAAC
CGTCTATTTCAGAAATTAACATCTTTATTATTAAAAACTTCTTGAATACTTGAGCAGAAA
CATCATCACACTGGTAGAAACTAGGGTTCTACCGGCCCTCTGCCTTAGGTTATAAGGGTA
GGAGGAAGGTTGGAGTAGACGAGGGCGCCGCGGCCGGCGCGACGGCGCC