Contig Data
morexGenes
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Map Locations of contig_2547111 (4124 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_2547111

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_36640 2 1728 bp MLOC_36640.2 Available Available LOC_Os01g54090.1, FRAME:+3, EVALUE:7e-129, 13101.m05680 protein expressed protein
MLOC_36639 1 764 bp AK366462 Not available Available None





CDS Structure of MLOC_36640






CDS Structure of MLOC_36639






Contig Sequence (4124 bp)

>contig_2547111 4124 assembly3_WGSMorex_rbca.fasta
TATATATATATATATGTCTTAGTCTGTTCCTTATTAACATTGTCTCCTGATAATTCGTGG
TATACTGAAATCATATATAGTTTCTGTATCCACCTTCAGTTATGAATATTCTTTGTGTCT
TGATTTCTGAAGTATCATCGATATTGTATCCAGGTTGCGTCTTTGAAAGACACAATATCA
CGTAAGGATATGGAAATTGAACAGCTCCAAGTCCTTAAATGCAATGTCAAATCTCCCAGC
TCATTAACGGATAAAAGCGGCAGTAGCTTGGTAAAACAGTCCTCTACGGCAAGCCAACAG
AACCAACTAATATCAGGTGAGAGATTGCTGAAGTGTCAAAAGTATACAGCGCTCAACAGA
GGCAATAGATAACCTTTAATTCACACACACCAATATGTATATGCAGGGTCCATTGGATCA
GGTGAACCCGAATACGAAGATAATGCATCCGACGATGGTTGCTCGGTAGGCGAAACTGAG
TATTCTATCGGCAGCGCTTCAGAACCAGCAGCAGATCGAACGTATGTACTCATTCTGCTT
TCTTTTCTGTTACCTCTCGTATGAAGCCGTCATGCACTAGTGCCAAATTTATTTTACGCC
TCCGCAAAAGACGACGTAAAATCCTGTACTCCGAACTCAAAAGGGTCTCCCATCAGTTCT
TTTGGCGTCATCGTAGCAAGCGCCTCTCACCCTGACGTGCAACAACATTTTGTATAATTG
CAGGCAGAAGGGTCCATCAAGACTGACCAGGTTTTTCCTGACGAAGAACGGGCAGCCAGC
TGCTTCCAGGCCGAAACCGAAGGAACCTGTTCCAAAGACGACGCCCATAGGTACGCATTC
GCAAGCAACCCGGCATTTCTAGCACATGCTAAGGCCACTGGTGCCTGGTATTAACCAGAA
AATCCATGAACCAGAAATATTGACATTATGAAACCAGAATCTCAATACCGTACTGACCGG
AGCCACTGTATTCGTGAACCAGGTCGCCGGAGCTCGATAGCCAGCCAGGCCCCGACCGGA
GCATCTTCGATCAAGCCCCCGAAGAAGCGGGTGGTCCCGTAAAGGACGACGAGGGGCTGC
TGCGTTGGTGTCTTGCATCTGTAACGAGGCTTGGATAGTTTTTGTCTTGTAAACCTGTAA
CGAGACACGACACAAGACGCGGGTTAGGATGTATGTACCGTATGTGTCGATTTCAACTGG
GCAGGCAGCCATGTACCTGTAACACGACCCCGGATGATTTGGATCAATGATGGTGAGCAA
GGTACGCTTGCTGGCCGCTGTGACCAGATATGATGAGTGTCTGGGTTTATTGGCCTTGTG
TTGTCAAACATGCATCCACTATGTCGCAAAATGCTTGCCTGATGTGGTGTTCCTAGCACC
GGCTATGGTAATTGGTTTAGCGCCCTTTGTGATGATCATCGAAGAGTATGCCTTTAAAAC
AGAAAAAAAGACATTTTTCATTTTGTGAAATGGTTTTTTAGAAACTAGAAAGATCTTCGT
GGTATTAATATATTCTTTTTATTGAAAAACTAACATAGAAAGATCTTCCTGCACGCACAA
ACAAAGCTTGTACTATTGTACAAGGTGTGGCATTGTCGTTCCTCGAACAACCAAATAAAA
TAAAAATAAAAAGGTGTGGAGATGCGGCATTCTCCTCCGTGGAACAATCTGCAGGAAAAA
AAATAGCGATTGCGGTGAGCGTGGATCGAACACGCGACCTTCAGATCTTCAGTCTGACGC
TCTCCCAACTGAGCTATCCCCGCTGTTGGTTCTGCTGTTCAAATACTGTTATATAACCTA
TATCTCACTTTGTGGACTGAGCTGCCAACGTTTGCTGATACACAAAAAAGAAAGAAATCG
AAATGGAAAATTCCACCAACCAAAGAATCCAGTAAAACCTAGAGTTGGTTCGAACAAAAC
ACTCTCAACCATTGTTATGCTTGCTAGCTGCCCCTGCGTACTCAACTACTACTACAACTA
CTAGTGGGCACCGATACAACCATACAACACACCGAAAGCTTGCGAATAAAGAAGCTGACT
GAGACGTTATAAATAAAGCAGTTCAAAGAGAGCATGGCGCTTTGTCGTCCGAGGAACAGC
TTTAACAGAACGCGGAAGGATGTTTAGACAGTACACAACACACAGCACAGGCTGGCTGTT
CCCTGATATGGATCATCTCACACAATGATGCAGCATCATTCCACCATCTTCTCTTTCGAG
CTGGCGATCTGGTTTCTCCCATCTCTCGTCTCCGCCACGGAGAAAAAGAAGCTTCACACT
CTGTCCCTACAACAAGCCAGAGCACAAGAGATCAAGCTGGGCGCCTATACAAATATATAT
GGCGCAATGTATCTCCCCATGCCATCGCCAGCAACACATGCAAGTCGCTGCATCCGTTGC
TACTACTGCCTATCTTCAGCAGCGTATACTATAGACTAGAGAGCTCCGGACGCGATGGCT
ACTGCGTCCTTCGTTGCCTACCTCGAGACGCCTAGAGAGCTCCGGGTGCTGGGGTTCCGG
GCGCCGCCGCCGTCTCCGATCACCGGCGTCCTAACAAACGGTGGATCTGGGTTAACTGAG
CACGGCGAGTGCTCCGACGGCGACGAGGATGACGAGGTCGGCAGGTTCCTGCGCCGCTCG
GCCAGAGTTCCGGTGCTGCGGCTGCCGCAGAGGGCTATACCACGGAAGGAGAAGAGTGAT
AAGGCGGTGTGGGCTCCCCCGGTCATCGACATGCGCCTGCTGGCTTCGCCGGATGCCGGT
GGGCCGGCGGTGGAGGCGCTGAGGTCGGCGGCCGTCGCGCTTGGCTGCTTCCAGGCGGTT
GGCCATGGGGTCAATGAGTGCTTGCTCTCAGCTGCGGCGGGGAGGGCGAGTTCACTTACG
CCGGAGGAGGAGGAGGAGGCCGGTGGAGAAGATGAGGAAGATGGTGAGGAGCTGTGGTGG
TCACACAGGGAAGGAGACCAGTTCAGGTACCAACTCTGGATGATGTTGTATAATTCGGCT
GACACAAACTCAGAGTATGAAATCCACAATTGTATAATCCAGGACCGGAGCAGGCGATTT
GTTCATCCAGCTGGAGCAAACCGCAGCCAGACTCATGGACGCCCTGCGGCGAGACAGCGT
TGGCGCCACCATGGACAGGGTTGACAGGAACGGCTCGCAACTCTGCATACGCACGCACCA
CCGCCGGCGGTGCGATGGCGGCAGCGGCTCTGTTGGGCCGATCACTATCAGCAGCCAGGA
CGAGATCCTGAGGATGCTGATCAAGAGCTCGCGCTGCCCGCGTGCCCTCGCTCTCCGCCT
CTGCCCCGGCGCCTCGGCGTTCCACGTCTTCTCCCGGCAGCGGGGACGGGCCAGGTTCCG
CCCAGTCGGCGGCGCCGTCGTGGTCACCGTCGGAGACCAGCTTCAGGTGACGCACCAACC
TAACCTCTTGAGCGTCACCTTTTTCTGAGACGAAGACTGACCGACATTGCAAATGAACGC
TGCATCATGACAGGCATGGAGCAGTGGACTCTACAAGAGCGTGGCTGGGACACCAGCTTA
CAGCGGCGACGGTCTGCGATTCTGTGACGTTGTTGTCTCAGCGGAGTACAGGTACAGCCA
CAGCCACAGCCACTCCTGCTCTTCGGACAGCAAGCCCGTGCAAGCGGATGCCGGGAAGAT
CATTCAGTTGAATCTGCAGATCATGGTAGCAACCTGCCTTGTACTCGTGTACCACTTTCT
CCTGTCATGGTTGTATACGATTTGTTGCCACTAGTTCTTGAGAAGCTGCAGGATTTGTTG
CCTGAAAATGCAGCTTGGTTTTTATTTTAAGTTCAGCTTGGCTTGTGAGGCGAGCATTAG
CCCGGGACCAATACGAATTAGCCCAGGACCAAAAGTATAGGGTAGGAAGCATGAACCGCT
TTGGGGCTCGCCTTGTACTCCCTCCATCCTAAAATAAATAATTTAAAAATGACTCAACTT
TATACTAAAGTTAGTACAAAGTTGAATCACTTTTCAGTCACTTATTTTAGAACGAAGGGA
GTACAATATTACTTCCTCCGTTTCTAAATATAAGTCTTTTTAAACGTTTCACTAACAGAC
TACATACGGATGTATATAGATATAGTTTAGAGTATAGATTCACT