morexGenes - Barley RNA-seq Database

Contig contig_2547027

Source Contig contig_2547027

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_2547027 (3870 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location

Predicted Genes from contig_2547027

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_36604	1	1273 bp	AK362989	Not available	Available	None
MLOC_36603	1	306 bp	MLOC_36603.1	Available	Available	None

CDS Structure of MLOC_36604

CDS Structure of MLOC_36603

Contig Sequence (3870 bp)

>contig_2547027 3870 assembly3_WGSMorex_rbca.fasta
GGAGACGGCGACGAGGAGGAGGAGGAGCGGCGCTGTGTTGATCGCGAGGCCGAGGCGGCG
CGGCGACATTAGCATTGAGAGGGAGAGGGAGGAGGCGACATGGGTGTATGGGTGGAGGGA
GCTTGGCTTTGGTTTGATTTCTCGCTTGGTGGCTTGGCTTTCTGTTTCGGGGTTGTAGGT
GGGTCGACCCGATGGAGAACGAGTCGAGGACACCGCGTCCGTGTTGGAGTTGGGTTGGGT
TGGGTTGGTTATACTTTTATATTTTTTTCATATTCATACTCTATTTTATGTGCTTGTGTG
TAAAAAATATGTGTGTGTGTGATTGTGATGATGGGTCGATGATGAGGTGAGGGAGGTTGT
TTTGGTGTGGTGTGGTTTGGTTTGGTAGACTTGACTAGGTCCGTTGAAATTCAAGTGTCA
ATGCTACCTTGTGAATTTGTTTCTCCTCCCTCGCTTTGGTGCCTTCTCAGCTAGCTCTCT
TGCTAGCTGCTTAGTGCCAAAACCACAATGATTGCCGGATTAGCGGTTACCAGGAGGCAA
ATTAGTGCATAGCCACTTAGCAGGGCATCTTTTTTTCTTCCTTTCTTGAGGAATTATCAT
CAGGGCATCTCTAACAGCAGAGAAGGAAGCCGATGCTATTCTCTGGTGCTTTCGTACAAA
CTTGGTATACAGTTCTCCTGGTGGGAGGAGGTTATCACTCTATCAATTTTAGCGATTGCA
TTAACCTTAAACATGTTCATAGTTAAAAATGACATTGGAAAAATAATGATAGATATAGAT
GGCATGTTGTGCAATGAAGATGGAATCAATCTCTCGGCCATGGACATGGAGAGATCATGC
TTTCATTCACCAAGAGAAACTCAGCAACTGGCATATCTCCCGTACAGCAACAAACAAATT
CCCTCACAAAACGACTGAATCCCCTCACAAAGCAAAAAGAAAATAAATAAACAGACGACT
GAATCTACACTCAGAATCAAGAGCCCAGTCTGTACAGTCCCTGCAGAATTGCGGCCAAGC
CGGAAGAAGTTAGTGGTGGTTTACTGTTTTAAAACTTTTGACATTTATTTGGTTGACGAA
AACCCAAACCAGACGAGGTTTCGATCCAAGTTACGTGGGCTTGGAAACTTTCCTACTATT
TTCAAGGCAAAAGGCTGAAAGTTACTGTACTACTTTTGTTCGCTGCACGTACTATCGCAC
AAGTATTACCCGGGTTATTTGCTATATATATATACTCCATGTATGTGCTTTTGGGGAGTG
CCCAGTCTTTCCAGACAACTTGTGCATGCATTTATCGAAAAAAAGAAAGTGCTATTATTG
AGGCCAGAAATGTGCCCAGATCTTTGAGGAAGAAAAAAGGACGTGCAAGACGGCAAAAGT
GTTTACTCCAAAACTCTGCTTGCTGGCTAAGGCCAAGCGGAGAGACCTTATCAGCAAAAC
AGCAGATACACCATAAAAATCGCCACTTGTCCGCATACTATAGTGTTAACGTTGAGACGA
CTCGAGAGGGTAGGTGACAGTTTTAGGACACCCGATGAGAGAATGTATGTATAAATCTTC
ACTCACAATATTCAATCCTGAATCATGTATGCATCCCAATCCCAATCAAAACACCTTTTG
TTTTTTGTTTTAGGCAAGCTCAAGAGTCAGGCACTAGTTGGCCGGAAGAATCGGCACAAA
ACACTAGTTTAATAGCCCTCCCTCCCTTGGGAATGAAATGAAATGAATTATAGCCTTGAG
GACAACCCTATGCCAGGCCGGCAAGCAATGAGAGACACTGACGACATGTGATTATCGCAT
ACAAAATTCAAGTCTACGCCCAAGAGAATTCTTCCTCGACAGGTATCCTCCAACTAATTT
TGTACCCACATCATACCCGAGCATCACCACATCAGCGTTATTCCAACCAGCTTCCCATGT
CTTCAGGGAAGAGGTTTCCCAAAGTCGCGACGCAGCTGCGCGGCATGGAGCTGCTTCTCT
CACAAGAAAGAAACCACGCATGGAATTTCTTTCCTACCGTTTCATTATCGCTGTCAGGGC
GGCGTGCAGGGGGCTCTCCTTTGATGCCACCACACGGCGCTGCTGACGGAACAGAGAATG
GCGACCCCTGAAAGCGGAGCCCTGCTTGCTGGGGAAAAGGCGCGCGCAGACTTGCAAGAA
TGACTCGTTCTCCTGTTGAATGGGCAAATCCTCCATTTCAACCTCCTGGCCGATTTCGGT
CTGTGCCTGCGGTCACATCACGAAAAGCAGAGTTTACGAAACAAAATCCAAAAATATGCA
GGCATACAGAAATGACTTTTAAACCAATATTGTTGATGCCTATTGATCCGGTTACTAACA
TCTGATGTGGGTACACTAGAAAAGAGAAACGGCGCAACGTCCACTAATGGAAGAACCAAC
AACGCATGTGAGTGGGACAAAAAGCACATTGCAATACAAGTCAATGTTATATTTCCATAT
ATTACTAGTTGCCGGGAACAATTTGATGGTTCAGCTACCAAAGGTAGCAATACAGGCTGA
AAAACAAACCGCTTAACAAGACAATTATGAACCTTTTTGCCCATGTTGGTCCTAGCAACA
TTGTCAAATACCGCCACACCATACACAAAAAGAAGTTGAAATTTCCAGGATACCAGCCTG
GCTAAAATTACCTTCTGTTCATGGCGCCCAACTACTGGGTCATCATTAGGCTGAGTGGAA
GTAAGCTCGTCCTGACTGTTCAGATCTTTATACTCCTCTTCCTTTTCCTCCGAGTACTGT
CTGGAGACCTCATCTTCATAGTCAGGAGATGGATTATTGACGGATTTTCCACGATCTTCC
ATCTGATCATCTGTTTCCATTGTCGCTTTAAACACATCAGTATGTCGTGGTTGCTCCTGA
CTAGAGGCTGTGTCATGACTACCATGATTATTATCACCGAAGTTTACCTGGTGTGCAAAA
GCGTGAGTTAGTTCAAGCATTCAAGGTGAAGACGATCCACATAACCGGTAATGCAAATTT
ACATTATGAGAATAAGCCAAGTGTTTATGAAGTAAAAGCACACCTTCCAGTACGACAACT
GAATGAATGGTGAGAAAAACTTATGACTACACAGTTATGGAGTTACCAAAACGACACCAG
GAACACTTATGCCCCCAATATGGTGAAGAGTACTCTAGTGTCACCAGGAACACTTATGAC
TACACACAAACACAGATAACAGAAGCATGGCAATTCTACTGAGCATGGTCTATTACTCAA
ACATAAAATAAAGCAACTAGAGAAACAAATCCGATGTACATTACACAACACAACAGCCTC
AACTCAAAAGGTAATAGGTGAAAAATGCATATATATGCATACAGAACACAAAGAATGCAT
GGATGTAGCTGTTGATTCTAACCTCCATGTTGCGCTCTTCAGAAATGTTCACCACAGTGA
CTTCATTATCAACAGATAAAAATTCATCCCTTTCCTTCTTACGCCGTGTAACTTGACAAA
CAGCACATGCACAATCATTTTTGTGTCGATCATTCCTGTATTCAAACACACATAAGAATA
TAGAATAATATCTCCTGCAGCAGCATAGAGAACCAAAAATTCAGCAGCTGGATATATTGG
GATAATGTGCTTTCTGTTCGTTAGGAAGTCCACAGGAAAGTGTCCTGCCTTCCTATTAAA
TAATATTAATCTAACAAAAATAATCAAGAAAAAATATGTGCGCTGGACTACCCACCATGC
CTCTGTTATATCTGTTAGGAAAGCAACTTATCTGTATTGAAGGCCCAAGGGGCATNNNNN
TATTACACATGACTTGAGGTGCAAGGAAAGTAAACATAGACTAATAAGAACTCCTAGACT
AATACTAATAGACTAATAAGGACTCCTAGA