Contig Data
morexGenes
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Map Locations of contig_2546956 (5877 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_2546956

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_36545 1 378 bp AK359559 Not available Available None
MLOC_36546 8 1692 bp AK359231 Available Available None





CDS Structure of MLOC_36545






CDS Structure of MLOC_36546






Contig Sequence (5877 bp)

>contig_2546956 5877 assembly3_WGSMorex_rbca.fasta
GAGGAGGAGGAGGAGGGCGTCGGCATTACGGTGGGGAACTTGTTGCTGGTGTAGCAGATG
AGCATGCAGGTCTTGCCGACGGCGCCGTCCCCGACGGTGACGCACTTGATGAACCGGGAG
GCGCTGGACGCCATGCCGGCTAAATGGACGAGAAGGAAGGGGGACTGACTGAAGCAGTAG
CAGAGTCTAGCAGAGCGCGCGGAGGAATGGAGGGCTTGAGAAGCGAGTGATGTGTTGGTT
GTGTGCCTCTGGTGCCGTTGGTGGCTTCTTGGCAAAGGGAAGTTGAAGAGGGAGCGGGAG
AGGCAGAGGGAAAGGGAGGTCACCGTCGCATCCTTCTCCACTCTCTCTGGCCTCTTAGGC
TCTTAGCCGCCTCTCTCTCTCTCTCTCTCTCTCTTTACTCCTAGACCCCTGATTCGCAGG
ATTTTAAAAAATACTTCCTCTGTAAATTAATATAAGATCGTTTAGATCGTTATTTTAGTT
ACCTAAACACTTTTATATTAGTTTATAGAGGGAGTAGCATAGAAAAAATAAAGGATTGAA
ATGGTATGTTCATTTGAATCCTGTAGGATCAGCAAGAAGTGTTTGATGTCACGGAAAAAC
AAAAAAAAAGTAAAAAAAAAGGGTTGAAGTGTATGTTAGATTCTCCATGAAATTTAGTAC
AAAAGATTTCATAAAAAGAATTCTTATGGGGTCCAATCCTATGAATCAAAGGACCAATGT
AGAAAAAAAAATCCTAAGAATTTCAATCCTCTAGAAACCTTATAGAATTCCTTTGAATCA
AAGAAGTCCTATTTTTTGCAGTTTTGCCGTGGTGGCTGACGCCGTGCTCTGTTTCAGAGG
CTTGCTCGATCGGACCTGGATCCCCGGGTCGGATTATGTAATTGATTATGAGTCTGTGCT
TTTTCAAGGGGAATAATTATGAATCGTGCTGCCTGGTGTGGGTCTTTTTGTTTCTTCTTC
AGGAAATAGTTCTTTCAGTACGAGGTCTTCTATTTATGTAAGCGCAAAACAGAACAGCCC
ACTCAGGACCTCTTAAGACTTGCGAGTATTATTGACTCGATGAGCAGCTGCAACGTGCCA
TTCATGCCAAACAGACCCGGCCTAAGGATCTTGATGGTTGGGCAAATCTTGCGATCCAAC
CATAGATGTTTTTCATTCACAAGTGTGTTGCGGACCTCTTGCATTGCATTGCATGTGACG
TTGACGTTGGAGTGGCAGGGCTGCACGTAGCTCTGGCGTGGTCGGCGCCTAATTTGACTG
CAGCCGCATGCATGGCAAGCAACGGCTGCAGCCTGCAGGACAGGTACGTGCGTGCGTGCG
TCTGTCGTGGGCGGTGGGCGGTGGCGGTGCGCGTTTGGCAGCGTCACATGGCGCCGGCGT
GTACGTATGCCATGTGATGTCCGTGCCCATCAAACGGGCATGGTGCTGTGGCAGGCGGCC
ACCAACTGAGTCACACTGTCCAAGCTCCTAGTAGTACCCCGTCTTGGGAACAAAAGCTCC
TGCTGGGAAAGGGAAACAGTGACCAACGTAAATCAAGGCCTGTCTTTGGTCAGAATCTTT
GCACCACACCTGTGCATCAGCCTCTTGAAATTTAATTATAGTATTATTTTGAAACAAGTA
GCCTCTTAAAATTTAAGCCGCTGCTAACAGATTATGCAGACGTATGGTCCCGTATGGATA
CCAGCTGTTGTGACCAAGCGTTCCATTCACTGCCAACGTTTGCACAGACTGGATCGACAC
AGCCCTGGAACGAAAGGGATGGAAATCATACACTACACCTACCAGAATCATGGCAAGTAG
GTATGATGGATTTGCTTCCACGGGAAGGGATGACCAAGGGGGGAAAAAAGGCTCGTCAAA
AACACGCATCGCCCGTCGACGAGGGCCCAAACCTGCGACAGACACACCTCCGTCACTTGT
GCTTGAAGCCAGTCAAGCTCTCTTTACAAGCAACATACAAGGCAACCACCACTGCCACTC
AAGGAATGTACGGGGAAAACAAAATTTTGGTGGAGAAAGACACACGAGTACTCCAGAAAA
GCGAACAATTGGCACAAAAAAAGTATCGCCACCTGAGTAAAAGATTGCAGAGGTTTAAAG
TGAATATACCACGGCAAACGTGACGATGCGGATACGGATACGCAAATGCAAGGGTACCTT
TCTGGTATTGATTCAATAAATCAAATGAGAACATAACTTCGATTGCTGCTATTCTACAGG
TTTCCCAGTTGCTCGGTGCCACATTTTTTAACCTAGACAGTGAGGATACGATGTTGGCCA
CCATTCAACTTTTTTGCCCAACCATAATGCTCTTCCACGTCCAAAACTTCAGCAGCACTC
ATTGCTGAAGAGGGGTTGCTCGTGCACTTGGCGTTGTATAATCCAACACAAAGTACGTGC
CAATAGGATGGCCGGATATAGTGGCATCGGCCAACACCGTGCTTTCACTCAGGCCTTCAG
GTCATCTGACATCGCTGAAGGTATGCAGTGTGTTGTTAGAATGTCCTGAGTCGCAGCCCT
TGCTGTTTTTGTCTCGAGAACAACAACCTGCCAAATCATCCGATGGTTACTCCGAAAGCA
TGCTTAACATTCAACAGAACATTATAAATTGGTGGCAAATTGATTACCTGGTCGTAATCC
ATGTCAAATTTCAAGAACTCCTTGTTGCAATCTTCCACCATTGTCGCCAGTTGCTTCAAA
TTATTTACTGGTTTCCCATTGAACGCACGCACCTATATCGATAACAGAAAGGGCAGATGA
TAGTAAGGGCACATTATTATACACTGCTAAAGAAAAGAATGTTAAGTTTACTACATGCCT
TGGAATATGGTACTCCCTCCGTTTATTTTTATAAGACGTTTCAGACAGCAAACAGTATGT
AAACTAAGAATGTCGGGTCCGCTAAATTTAGTATCAATGCTACAATTTTGCTTCTGAAAG
ACACGCTTTCAATCATTCCACTACAAAAAGAACAGCATTCCTACCTTGACTGTTAATTCT
TGTCATACTAGCAGAACTTCCAAAAGTATGTTGGTACTTTTGAGACAACAACCATGTTAA
TAGCATTTTCTCATGTCCAATCTTAATGCTTACAAGTTAAAATTATACAAATATTCAGAG
TAACAGTTAAAGGATACCCAGCGGGTAGAATGAATAGTACATATGTTGTTCACAATTTTA
CACTCGCTGATAAGCACATTTGACACAAAAATGAATTATCTCAGCTCAATAACAGGTACA
TGAGTACATGACAACTATCAAAATTTAGAAATCACATACTCACAAGTCAATAGGAGTAGA
CGAGTCACATGACAAATTAATACTCCCTCCGTCCCAAANNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNAGCTTAAGACACTTATTTTAGGATGGAGGGAGTAATT
AATAGGCGATAACCTAACATTAGTTCACAAGTGGGTAGGGTATGGGTATACCTGTACCAT
ACCCATGACTTAACAGGTAGGGTATGGGTACTACACATGGGTATAAAAGTATGCCCATAC
CCTGCCCATGCGGGTACAGTACACGCGGGTACCCATACCCGTGGGTAAAATTGCCATCCT
AGGTATGGTTAACCCTCGGGTATGGGTACGGGTAAAGTTTCATACTTGTGGGTACAGGTA
TGGGTAGAATTTTGTACACACTGGATATACGGGTATGGGTATGGTATTGCTCTACCCTGC
CTATATCCTACCCATTGCCATCCTTAAGTTAAACTGACATGCAAGAGAAACTGGCATAGA
AAGAATGCTAAGGATTAATTGATGCAGCAGGACAATAATACTTCATGTGAGTACAGACAC
GCCAATTTAGTTCTTGAACTGAATATGCAGACAAAACTTTGAAAAATTGAAACTCAAAAC
TAGGAATATCCACATAGGGACCACCCATAACTACCTGAGTATTGACAATTTCTTCATAAC
CAATATTGATATCTGCCACAAGCACCTACAAGACATAAAATTGGTGTCAAATGGTAACTC
TATCAAGCTTCAATGCAAAGCAAGATGGATGTGCTTGTGCCACATAGCATAAAAACTTTC
ATAGCCGGTTAACAGAAAGGGGTTGACAGACCTGTGAGACCACCACAAGCTGCTCATCAG
GTGATTGCGCCATTGCATGTAGATGCTTGTCCAACAACTTGACGGGGGCATCAAATTCGT
AATCTTTTCCATACTGATCATCAAGCATTCTAGTTAGTTCTACAATCAAAATTGCTACCA
TAATTTTAAGTGAAAAATAACAAAACTACAAAATCCAGAGAAAATATACTTCGAAAGTTG
GATTCAGGCACAATTATGGGTGACAAGGACATATTAGCAGTGTGCATTCAACATTCAAAA
TATAGTGCTTCCAGGTTACCATGACAAACAGTTAAAAACAAGATATATAGCACTGTACAT
TCAAAATTCAAAGTATAGTGCTTCCAGGTTACCATGCCAAACACTTAAACATAACTCAGG
ACAAGCAAGTCCCATCCATCAACATGGAGACCATCATTTCACACATGTTCAGGTGACAAT
ACTTATTGCATACAGAACGCAAACAAAATACTCGGTGCAATCATGACATCATGTTCATTG
TTCAAGCTTACATGGCAATTCGCTACATTAGAAAAAGACACAAACAGTTGTCAAAGCTCA
GTGCATATACAGAATAAACATGTACATAATTATTTTTATTTTTTGAAACAAAATGGCAAC
TTTTGAAGATATTTTTAAGACATCTACAAAATTAAGAATATCTTCTGTAAAGCAGTATTT
CCCCTGAAGTGTGTCTACGGAGACAACCAAATAAGAATATATTATGCTGGTTACTATCTC
ATGCCTAGGGCAGAGGAGAGAGGGCAAAGATAACATACCTCGGATCGAAGATATGGAACA
GATACGACCATAAAAACAAAGCCTGCAACAATGTAGTATGACGGTGGCCTGCCCTTTATA
TGAGCTGGAATGAGCTTTTTGTGGATTGATAGCTTTATGTTGAATTCATGAATTTTTGAA
CTCCGGAGAACTTTGACACGTGCCTTCTCACCAGTATACTTCTGTGAAACTAGGTAACTG
AAGCCAATGCGCTCTCCATGCCTGAATGGAACTGGGTGACCAAGAAAACGAAAAGTAAGC
AAGTGGAAGTATTTTCCTTGACTGATAAGCAGGATTACATCTCGGAAACATGCAATTGTG
TATTTTAATCGAATGAAAACGTCCGAGTATACTTACTCCGGTATTCTTATTACTGCTTAA
AATTCCATCAGACAAAATTACTTTCCAACCTGAACTTTGGCAAGATATATCATCTACCAT
AAAATCTAAAACTGTTTGAATTGCAACCTCAAACTATTGCAACCGTCTGCTTTTCACCCT
TGGCTGGTCTCACGAGTAATCTTCGGTGACATGCATGCCACTACCATAAATAAAACAAAC
ACTGCAACAGAAAACAGTCTAAAACAAACTCCACCATTCAGATAAAAAGCTTCCACAAAA
AATGTCAGAAATGGAAGAAACATTGGTCGAGAAGATCAATAACAGAAACACTGTGACATG
GGAATGGTAAGGCAGTGCTGCGGTGGACACACGGCATCCACATCAGCCAATATCACTGGC
AAAACCACCTGAGGGTGAAAAACAGGAGGATTTCATAGTTCGAGGTAGCAAATCTGATGG
TCTTAGAGTTCGGGTGTCAAAAATGAACATTTGACGAGTTTGGGGCCAAAAGGTGGACTT
TTATTAATATTATCCGACAGGTGTATTTGCGTAAAACACTGATCAGACTAGTGATATTTA
TGCAAATCAACTGGGGAACTACTGGTGAGTGGTATCAGATGGCTAATACTAGTGATG