morexGenes - Barley RNA-seq Database

Contig contig_2546931
Source Contig contig_2546931
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_2546931 (8202 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_2546931

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_36534	1	2083 bp	None	Available	Available	LOC_Os09g04550.1, FRAME:+3, EVALUE:3e-26, 13109.m00387 protein retrotransposon protein, putative, unclassified
MLOC_36535	3	807 bp	MLOC_36535.1	Available	Available	LOC_Os07g11060.2, FRAME:-3, EVALUE:5e-74, 13107.m01139 protein expressed protein
CDS Structure of MLOC_36534

CDS Structure of MLOC_36535

Contig Sequence (8202 bp)

>contig_2546931 8202 assembly3_WGSMorex_rbca.fasta
TCTCCTGGACTCACGTAACTAGGCGACAGAGAAAAACCTGAACGACGTATCGCTACAGGT
TCGTATCAAACCTGATATTTCTTTATTGCGTTCGATCTCTAATCTGGTGTTACAACGATT
ACAGGGGTTGCACTTATATACACGTACGAGCCTAAAGGATCAATCCTACTCGGTATATTA
ATCCTACTCTACTCGGACATGTAAACCAGCCGTGCACGGACATCGGGTTTAATCCCAATA
GTACCAGATCCGGCGACCTTCGTGATGGCGGAGCTTGACCGAGAAGTAGCGGCGCCAAAG
GTCGAAGCGTGGCTCGATGCCGAGAAACAACTCGAAGAGGGCTATGAAACAGGTTATTTA
GAGGATGCCAATCAGGGTCATATGATGGAGTTAGGGGCCATAGAAGTGGAGAAGGCCCCG
GAAGAAAGGATGAAGAGGGAACTCCAAACTGCGAAGAAGAAATGGGATGAAGCATGCTCG
CTTGTCAACACGCAGGCGCAGAACAACGTCACTGGTGTCTTCTCCGTCTGCGTTGGTAGT
CACAGCAAGCGACACTCAATGACTCCAGGCGGCAACAGGTACCCCATCTCGATGAGGTGC
ATGAAATGCCCTTCGATGGCAGTGGACGTCATTCGCTTGCCCTTGGTGTCGGACTCAACA
TTTAACTTCCCCATGTTGCCGACGACACTCTTGCCTGCATTGGCCTTGCCCGTGGTGGTC
CCCCTCGGCGCCTGGGTCTTCCCTGGCTTGGGAGGCGTGCGTGCTTGCGTGGGCAGTGCA
AGACAGAACAAGTGAAAAGCTTGGAGCTTGAGCAACGGCGGCAGCAATGGAGACAGAGTT
CTCAAGATATATGGAGAAGAACAGCAAGGGCCAAGTGCAGAGTCCCGTTGGTGGATTTCC
CTTATAAACACCAGACGGGAAGGAAGAGGTGGCGTCCTTGCCATGACATGTGGCAAGTTT
AGCCTCCCCATTCCCCATTATCCCATGCTTAATGCACATGGGGATCGAGGCATTTCCATT
AATAATGCCGACGCCCGAGACGTGTCTTCCAATCATGTCACAATGACTAATAGGACGTGG
CTCAGATGGGCCCCATGATCCCACGGGCACATCACGTTGATTGATGGTCATCCTGGCCAA
GGTGGTTTGATTCGCCCAATTGAACCAATGTCTCGTCTGACCCCTCCATAGGACCCGGGC
TCTGGCTTCAAAAAGATACATATGTACTGGGTGGGAAATCGGCCTACAGGAGCCGACTTA
GCGGAAGACTTCACTGTGGACGGGTATATGCACCAACAATTCAAGAAGAGGGGAGCTTCA
TGAACCAGCTTCGACTCCAACAAGCGTACAAGGTTGGCGCCAGCAAATCAACCCCGACCA
AGAAGGAATCGGATTCAAAGACCAGTTCGAGGGCTACGGACGATATTACGGCCTATAGGT
GCCTCACCTTACCGGAAGTCGGACTGAGTAGGCTGGCGAGGGGGGCCCTAAGTCTTTTAT
GTCATGAGCCGATCAGCCCAGCCCATGGCTCTACAACGTGATGGGCTCGAAAGGCTTGGA
GCACAAGAGAAAGCAACCGGCATCTTGAGGACTCCTTACCGACTTAGAACATGTCACCCT
AGACCCCGACACCCATATAAGTTGGGGCTAGACCAATCAAATAAACACAACATAACCCTA
GAGCTTTCCTCAATCCCTTGGTCTTTGTGACCCCTATACATCAATAATATACGCGAGGAG
GAGTAGCGCATTACCTTTTCTATGAGGGTCTGAACCTAGATAAAACTCTTCCCCTGTTAC
CATCCAATCTACTCATCTCAAGGGATCTGTCAGTAAATACTACGACAATGTTGCAGTTGC
TACTTATGAGCAACAGGTCTTGGACTATGGAGGCTCTTCTCACTTATCGTGATGAGTTGT
TTGTCTACACTCAGCGGTTTGATAATGATACATGTGATATAGTTGTTCTCACTGCCAGTG
TTCTACTTTAGTTTGCCCTTGAGTTTATAGGCCTCACTAACGTCTTCAAGATGTGGACCA
GTCTTCGATAGTGATATCGGCCCTCTAGAGATGCCCTATTCCTATATGTGGTTTGCTAAG
AGCATGCTCTTAAGCAGGGTGACTCCATTGTTAATGATTTCTAAGCACAGAGCTCTGCTA
TCTGGCGATGTCTCGACTCTCTCTGCACTACTGGTTGAGCTTCATGCAAATGTTGTTCGG
TCAGACTTCGGAGTTTCAACGCATCTACTAGTTCTTGTCTCAACTCCGTAAGGAGTTTGA
ACCGAGGCACACTCAACTATTTGCTCATGATTATGTTTCTCTTATAGAGGCGCTTTCTGA
GATTCTTGCTAAGGAGACTCACCTAGATGATGCTGGTTTACTTGAGATTCCCTCTGCTTT
GCTAGTCGAGCTCATGCTATGTCACCTGCTGCACCAGCTCCTTCTCGCTCTAGTGCTCTG
CAGCTCCTACCAACTCCTAGTAGTGAGGGTCACTCTCGTACTGATTGCAGCTACTGCAAC
AGAGATGGTCTCCCTGGGTCTGATTGCTTTAAGCAGTTTTACCTCCGATTCCTTTAAGCA
GTTTTACCTGCGCAACAAGGAGCGCAACTCTTCTTCTGAGATTTGTGTTTCTACTCTGAC
ACCCTCAATTGTCTCTTTGACTAAGCAAGATATCTTGGGACTTAGCGTCTGCTTGCCGTT
CAAATTCTTCGATGGGTGTTGTAGGTTCTGTGACTGATGCTTTCGACACTGAGCGATCAC
CATCTACACGGTCAGGTTAGTCCCTGTGGGTTCTGAATTCTGGAGCTTCCTTTCATGTCT
TCTGATTCTTCCACCTTGTCATCTCTTAGATCTCTCGATTCTCTTGTTCATGTTCTCACA
GCTGATGGTACTCTTCTTTCTGTTGCTAGTCGAGGCACTCATACCACTTTTTTTGTTCCA
AATGGCATGTCTTGGCGTATTCGTCGCTCTCTCTATGGCCTTAAGCAAGCCCCTCATGCC
TGGTTTGAGCGTTTCACCTCTGTGGTGATTGTCGATGGTTTTCCGGCGAGTGCTTCTGCT
CGTGGTCGGGCTCTTCTTCTATATGCTGACGAACATGATCGCCACTGGCGGGGACTCAAG
TACATTGCCTTTGTGAAGACATGTTTTCTTATGTCTGATCTTGGCCCTCTTTGCTACTTT
CTTGGGATTGAGGTTTCTTCTACCTTTGGTGGCTTATTTATTTCCCAAGAGAAGTATAGA
GACTCAGATGGAGCTCAATGTTCACCTCCATAGTTCTGTTGGTGACCCCTTCTCCGATTC
AACGCGTTATCACCATCTTGTTGGGAGTCTTCTCTATCTAGTTGTCACTCGTCCGGATAT
CTCCTATCATGTCCCTATTTAGAGTCAATTTGTTTCTGTTCCCACTTCGACTCATCATTA
TCACCTTCTTCGTGTTCTATGATATGTTTGTGGCACGATCTCTCACCTTATTCTCTTTTC
CCACTCTAGTTCTTTACAACTTCAGGCATATTCATATTCTACGTGAGCTAGTGATCTTTC
GGATCACCGTACACTTTCTTCTTACTATGTTTTGCTTGGTGGTTCTCTCATCGGCTGGAG
GACAGAGAAACATACTGCAGTTTCCCGGCCGAGTGAAGAGGCTCAGTTGCGAGCTATGGC
TCTTTTGACAAAAGAGGTGCCTTGGTCACAATGGTTACTTCTGGAGTTTGGTGTTCTGTT
ACCACACCTACACCCCTCTTGCCAGACAATACATGTGATATTAGTATTGTACGCGATCAT
GTGAAGCATGAGCTCACCAAGCATATTAGTGTCTTCATGCTTCTTCTGTGTGCGCTCGTG
TGTAGGATCAAATTCTTTCTCTTCAGTATGTGCCTTCCGAGTTAAAGTTGGTGCGTTTCT
TTAGGAAGGCTCAAACTAAAGCACGACAAGGATTTTCTCTCTCTGAACTCGGAGTTGTGG
ATCCACCCCGAGTTTCAGGGGGGTGTTAGGAGTTATATTATTTTTCTTCGTGTTGAATCA
AAGAGGAGCTCACCTCAGCATCCTACTTCTCTAGTGGCTAGGTGGTTTGATGCATGTGGT
GCCTGACTACAGACAAAGCCTAACTCCTCCTCTAGGTCTAGCACATGGGCTAGGCCCTAT
GGTCCTCATCACTCAAGATGGGCTGGGCTCATACCGATTCAACACTCCCCCTCGAGATGG
GTGGTAGATATCTATCAACCCCATCTTGTCACATGCCAAGTTATAGTCCCTTTATCAAGC
AACCCGCAATGTGCTGTCGAGAGCTAACATGAGTAAGGTTGATGATCCCAGGATCAAGTT
TCTCTTTAATGAAGAAGCGATCAATTTCCACATGTTTTGTTCTATCATGTTGTGGGGATA
TTGGCAAGCTGACTAATTGTCACGCCAACTCTAGAGTCCCCTCCTCGGAAGTTTTAACTC
GCTCAGAAGGTTCTTCCCCCAGAGAATCTCACTCAACCCTCGAGTTAAAGCTCTATTGAG
CTTCTTTTGTATCACTAACAATAGTGGTACCTCTCATAAACTTCCATAATTAACTACGGC
TACACAATATTGTTACTATGAACTTGTCTAAATTGAGCATGAAAATTGGTACCTGTAGGC
AGTAATTGGAGCATCTGAATTTGCTTCTCTGGGCATCAAATCCATTCCACGGCCCGTACT
AATCATTTTTGCTGCCAGATCTATCATTTCTCCTGTTTCTGGAAAAGTTGCCCTATACTC
CCTGTCACTTACTGGGGCCTGAATAAAAGATCATCGTAGAATTTCTATCAAGATACTATT
AAGGTGTCAAATTAATTTCAGCAAAAGCAATTATTATCAGCACTTTACAAGCTGATTATT
TGCTTCTGTCCTTAGGGGTGAGAATATCATGTCCTACATCACAATCAGGAGGAAAAAAAA
ACTTCTGTGCAATACTCGGAGAACAAGAATATGGACAGGAAATTTATACCTGCAAAATTA
CTCCAGAAACTGCTTTGGAACATGCAAAGTTTGTCCGCATGTAATGTATAATATCCTGGC
ATTCATAAAAGTGTCTATGTTATCTCATACCGTAGACCATAAAATAGTGCAGTATATACT
GTAACAGCATACCTGGCAACCAGTGCTGTGACCGAGCAGTATTACTCCTTCAGAATTTTC
TTTATTTATCAAGTAGCCGATGAGCTGATCAAGTTCCAATGCATCCTTGCAAAGGAAAAA
GGACGATCACCACATAGATAGACTAAATCAAAGAAAAGAGAAGTAAAAAGGAAAAAATCA
ATCAAACGTTAATCCAAACAAAACTGATTGTGTCACTACTGCCACTGATTGTCCTCACTT
ATTCTAATGGTGCTGCATTGCACTAAGAAAGTAAAAGGTAAAATCCAAAGGTTTGATGAA
TAATGCAATATGTCATCAACATAACTGTCATATAGAGCTTAGTTCATACAACAAAATACT
CTAATCGCCAATCAGCTTGCCACAACATCAAATAAAAGGCATCTTCTATTGCAAACATGA
TCACGGAATGTTCTCCCCATGATTCCCTCATTTTTCTACATTCGTCCCACCCATGGTTCT
GAACTGAAATTCATGTTCAACCAAGATTCAGGAAATGGCAGGTAAGTTCTTCCGCATGAA
ACTACTCCCTCCATTCCTAAATATATGACCATTTAGAGATTTCACTATGGACTATGTACG
GGGTAAAATAAGTGAATCTACACTTTAAAATANNNNNNNATACATCCGTATGTAGTTCAA
TAGTAGAATCTCTAAAAGGTCTTATNTTTAGGAACGGAGGGAGTACATTATACTTGCATA
TACATATTAAACATTTTTCTGATTAAGAGAACAGCTCATACGTAGGCTCTGACCACCTAG
CCTTCAAAAACTATTTACAACTTTATACAGTGAATCCTGGTAAGTTTCACAGTACCAATG
GTGCTTTGTCTTTCTGCCAGTTATTTTGATGTGTGTGAATTTATAAGGTAACAATGAAAT
GTTGATTCTTCTATGCATAAAATTTCTAGCTGACATTTTTGCCATGTGGGAGTTCATACA
AAAGGTTCTCGAAGGGTCAAGTTTCAAGAAGAAAAAACATGTTACAGTTTTAGAGCTGTA
TAACTTAAGAAGCAACTTCATCGCATAATTCAAATCCGATTATCAAGAAATATTTGCTGT
ACTGAAGGAGTAAAGAAAGCTTTTAAAACACAGAACCTCAGATCCTCTTTTATCATGTAA
TCATGAGAACACCTCAAGGATATTGGTCTATTGCATACTTTACTACAATTCAGAAAATGT
TATTCTATCTGATACAAGGATGAACTAGCTGATGTAATTATTGACTAGTATTGAACATAC
TTGCTCCAAGCTGGAAATTCCGTATCCAATGTATGATGAAGAAAGTAATGGCTGAACCAG
TGACCATTTCTCAACCTCCAACGCAAGTGATAATGGTTCCAAGTAACTGTTAGGTTTCAG
AAATGGATTAGTATTATAGAACCAGACTTAATTGTTATATAAATAATCAAATAGAACAGA
TAAGTTTTGCATTATGATAATATATTTCTGAAAGTGTGTTATGGTCAATTTGTTCCATCA
GCCCACCACCACCTCCTCGGACATGCATATATTTGCTGACACCTTGCCTTGGTTTTGATG
CTGTCTCACTTCGAAAGATTTCTGTTCTCTGAGACAAAAACACATTCTAATAATTATCTT
TGGTAGACTGACAGGGCATTAGGCATACACCCCATACCACGTGTCATGCTTGGAATACGT
AGCACCTTGAGCAACACATATTTTGCCTTAAAAGTTCGGACAAGGTCTTTATAGTTGATA
GGAGGCAGCATTCAGATAACGCAAGGCCAGCAATAAGAAAAAAAACAAGAGATAAGTAAA
GGATGCTAAACTTATTGAAGCATAAAAATGACCAAACCAAGACACACTTTAACAGAAGCT
TGCCCTTACATGTAGTTAAGTTGAGGGAACAGTTATCAGAGATGATGATTAATGCGCTAA
AACAAACTACTTAGAAATAATGTACTAAGTCAGCAGTACATCAATAGCGGTGCAAATACA
ATTTAGCATAACATGGCTATGCTCGGTGTCAGGCTTTGATGGACAGCAAGCGCCCGTAAT
AATTAAGAAAGCAGAATCATATATTTATCACTGCCAAGATTAACAGAGGTGAACATAGTA
GAACACAAGGAAGAAAGAAACTTACAAGAAAAACATTTTCAATTATAAGCATGTATCATC
GATTAACAATTGGCATGGAGCCAATCATAAAATGCATAACCGCGACATGACCATGGATGG
AACCCTATACGCAATGACTGTTAGAAATATGTCTGCTTGTAATGACCTACCCCCTTGGGC
CATCAAAATGGAAGAATCTCTAGTACTGACCTAACCCTAAATACTGAAAAGTATATAAAA
GTAAACGACAATAATCTTCTATGCTTTATTGAGGGGTCGCCCACTTATACAGTAGAAAAG
ACTAGACCAACAAGCCGGTAAATCTATTGATCTATTCAAACTCATACAATCTCTAAACTA
AGTGGTTTCTTTCCTAAGAAAGATGCTTAATCAACTAGGACTTTAATTATGGGATAAGAC
TCCATATTTGATGAGCTAGTCCACATAACATCTCTCCCTTCCTTGAAAAACAGCTTGTCC
ACAAGTTGTAGGATGTCAATTGCCTCCCAGGGGATCTTGGCTGCTACCAGATGTCCAACC
AAAAGTTCAAACTGATGGAAAGGTCAGGCAATCCACATATACACTTCAACAAGCCCTCAT
GTGTGATGCGGGAAGTCACATGGGATGAAGTTGCAGAATCTTGTGACAAGCGAGGTGAGG
AAACCATGGGAGATGGCGGTGTCGGATCTGCAACGAGCGCTAGTACCATGCTGGTGTAGT
CGGCACCCTAGGAAGTGAACAGCAGACGAGCCAACTGGCCCAAGGGATTGGCGTAAGGTG
ATAAAAGGGTGTTGGTGTCTTATGTTGGTTGGCAACGGTCATCACAGGGTTGTGTTAAGA
GAGGAAGTAGACGGTGAAAGGCAGGAAAGTGAGGGGGTGGGGTGGGCAATCTGCACGATA
GGTGGAGGTCCGCCGACGGCGATTCCCCCACTGGATTTGGGGACTGTGACAGCCCGAGAC
CGACNNNNNAGAAGATTCCCCTTTTGTTTCGTTGCCGCCGTG