morexGenes - Barley RNA-seq Database

Contig contig_2546909
Source Contig contig_2546909
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_2546909 (6918 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location
Predicted Genes from contig_2546909

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_36515	1	2021 bp	MLOC_36515.1	Available	Available	LOC_Os03g18220.1, FRAME:+3, EVALUE:0.0, 13103.m02182 protein pyruvate decarboxylase isozyme 2, putative, expressed
CDS Structure of MLOC_36515

Contig Sequence (6918 bp)

>contig_2546909 6918 assembly3_WGSMorex_rbca.fasta
TTTTATTTCTGTTAAAGTTTCTCGTGCTTAAAATAGAGTTGCAGATTGTTTAGCGAATTT
TGGTCGTAGTGGGGATAGTAATGCCTGCTGGCTAGGTAGATCTCCACCTATTGTCTCTGA
TCTCGTTGATGAGGATTGTAACTCTATTATATTGGAATAAAATCCTATGACTTCCGCAAA
AAAAAAATTCTAAATGCCAATAAAACTTCAAAAAGCTGAGCGCATACATCTCCATGTTTT
ATGGACGCAAAAGGTTTCACCGAAAAATGAAATTTTTGGGCCCGTGCAAAAATTGACTCC
TGGAACGCTGTTTTCCAGCACTAATATTTGTCTTTTTGGCAGATGCAAAATTAAGGACAT
TTTTTCATAGAACTTTGAGCCACACACATATTTTTACGGAGTCGTACGCATGTTTTTTTT
TTACATTTTAGAACACATTTAAAAAACATTTGAAAAAGGATGTAGATGCACCTAGGTTCA
GGATGTCCTCACTCGTGGAACTCGTTGCTATTTTGTGAAGAATAAGAAGAAAACCGACCT
CGGCCCCGAATAAGTAAATTTACCGGAACCGCTATGTACCTGTGAACAATCCATCGTTCA
CACAATTCATCAAGATTGGTGCAGCTGGTCAGGTATAAACAAAAGAATACTTTCCAACAT
CAATACTCGGCAATACATCATGGCCATGTGAGCCTTTGCCAGAAGAGGGGGAGAGGGAGT
ATGGCCATGAGTGGAGATAGAGTGACCGGCCATGCATGACTGTTTCTTCCCACATATGCA
TTTTATTTCATCCTTATTTTTAAATGATTGATATGTCTAAAACCAAACATCCATTTTTTT
AACTTATTCGAAATCATCGTGACAAGCCCTTCAGACCAAGATCAATCTTGAATATATTTG
ACCTACTTTTTTTATTATATATTTCAATTATCTTTGAAATGAATTTTGCTTGTTTAAAAA
AAAATCACTCATTTAAAATACATGTTTTGCTTGTTTCAAAAACAAATTTCACTTGTTTAA
ATGAATCAAGTTTCAAACATTTTAAATTAAAAAGACATGTTTCAATTCCCCGGAATAATT
GAAATATATGAAATGAGTGAAAGTGGATTTTTGAATTAAGTGAAATATATGAAATGAGTT
GGTTTTTGAAATGTTTGAAACACGTATGTAGATGACAAACAAATTTAAATATGTATCTTA
ATTTGGAGAAAGAACTTTCATATATTAACCAAATTCACTCGTTCAAATAATCTATTTCAC
ATATTCTGGAATAATATATTTCTTATATTTGCACGGATTGGAAATCAAAAACTTGACAAA
ACTAGGAATATATGTTTCATATAATTAAAACACACCGGTTTAATATATTTGAAAAGAATC
AATTTCACACTATGAAACAACAAAACTCACATATTTCAAATAAACTTGCTTCACTGGAAT
AAGCAATTTTAGAAACACATTGAAAAGAAGATTGAGTGAAATAAGTGGATTGAATGGTGA
AATTTAAACATGTTTTAAATGTATCGAAAATTGCTCATGTTTAAAGGAAAAAAATATGAA
TTACTTAAGATAGAGAGGAGAAAGAATGAGTTTTTCCTGTGCATGCACATGCACTATTGA
ATGACCCACACATACCTTTGTATGACAAAAAGCTGTCAATAGTACGCATGTGAGAGAAAA
GTTATCAGAGAAAGAAAGAGAGATGCGAAAATGTGTGAAGCTGAATACATGTATATACGT
CATAGCAAAAAAAAATACATGTATATATACTCCCTTCGTTTCTAAATANAAGTCTTTTTA
GAGATTCTACTAAAGGACTACATATGGATGTATGTAGACATACTTTAGATTGTATATTTA
CTCATTTTGCTTTGTATGTAGTCACCTAGTGAAATATCTTAAAAGACTTATATTTAGGAA
CGGAGCGAGTATATACTAATGGGATGATGAAACCAGTGCACAAACCTTGTGGCGTAAGAA
AAACTCTGTCTTGCTCTCCAAACCAAATCCCTCCCCATTAACACCCGATTCATCAATCAA
ACGAAATAATGCCTCGTCCACCTCCAGCACCGGATGACAGGTGGCCCCGAGGAGCCTTCC
GATCCCACAACGCAGCGACATATGAGGCGACAAAATCGAAAGCAAAATATAATATTTCAT
AACAACAATAGCCGAATTTTATTACTTGCCGTCCTTGATTCTCTCGTCGTATAAATAGTC
ACGACCAACACGGGTCAAACCACCCACGAAAACAGTGTTCTCCCCATCTCTCCTCCTCCT
CTCCTCGGGTACGTACCATGGAGACGGGCATCGGATCGGTGGACGGGCCCAAGGGGGCGC
CGAGCGGCGCGGTGGCGTGCCCGGCGACGTTCCCGGCGTCGTCGCCCACCTTCATCGGCT
CCCCGGAGGCCACGCTGGGGCGGCACCTGGCGCGGCGCCTGGTGCAGATCGGCGTGGGCG
ACGTGTTCGCCGTGCCGGGCGACTTCAACCTCACCCTCCTCGACCACCTCATCGCCGAGC
CCAGGCTGCGCCTCGTCGGCTGCTGCAACGAGCTCAACGCCGGCTACGCCGCCGACGGGT
ACGCGCGCGCCAGGGGCGTCGGCGCGTGCGCCGTCACCTTCACCGTTGGCGGGCTCAGCG
TGCTCAACGCCATCGCCGGCGCCTACAGCGAGAACCTCCCCCTGATCTGCATCGTCGGCG
GGCCCAACTCCAACGACTACGGCACCAACCGGGTCCTCCATCACACCATCGGCCTCCCTG
ATTTCTCTCAGGAGCTGCGCTGCTTCACGCCGGTCACGTGCTACCAGGCCGTCGTCAACA
ACCTCGAGGACGCCCACGAGCAGATTGACAAGGCCATCTCCACGGCTCTCAAGGAGAGCA
AGCCCGTCTACATCAGCGTCAGCTGCAACCTCCCCGGCGTCCCCCACCCCACCTTCAGCC
GCGACCCCGTCCCCTACTTCCTCGCACCAAGGTCTCCCTCCATGCATGCTCCCTACGGTT
TTTTTCTCCTTAAGGTCATGATCGATCGTGAGATGCATGCATGCATACATGTGAAGATAC
AATGATGGACGAATGACCTGCAATGCAATGCATGCAGGATGAGCAACCAGATGGGCTTGG
AGGCGGCGGTGGAGGCGACGGTGGCCTTCCTGGACAAGGCGGTGAAGCCGGTGATGGTGG
CCGGGCCGAAGCTGCGGGTGGCCAAGGCGGGCGCGGCGTTCGCGGAGCTGGCGGACGCGA
GCGGCTACGCGGTGGCGACCATGCCGTCGGCCAAGGGGCTTGTGGCGGAGACGCTGCCGC
GCTTCATCGGCACCTACTGGGGCGCGGTGAGCACGGCCTTCTGCTCCGAGATCGTCGAGT
CGTCGGACGCCTACCTCTTCGCCGGCCCCATCTTCAACGACTACAGCTCGGTGGGCTACT
CGTTCCTGCTCAAGAAGGAGAAGGCGGTGATCGTGCAGCCCGACCGCGTCACCGTCGGCA
ACGGCCCGGCGTTCGGCTGCATCATGATGAAGGACTTCCTGGGGGAGCTGAGCAAACGCC
TCAAGAAGAACACCACCGCGTACGAGAACTACAAGCGGATCTGGGTGCCGGAGGGGCAGC
CGCCCGAGAGCGAGCCCGGCGAGCCGCTGCGCGTCAACGTGCTCTTCAAGCACGTCCAGA
AGATGCTCACCGGCGACAGCGCCGTCATCGCCGAGACGGGCGACTCGTGGTTCAACTGCC
AGAAGCTCAAGCTCCCCGACGGCTGCGGGTACGTACTACAAGTTGTTCTTGCCAGCACGT
TCTGCTGAGTTGATATGAGCAGCCTTGTGATCCGTGCGTGCAGGTACGAGTTCCAGATGC
AGTACGGCTCCATCGGGTGGTCCGTCGGGGCGCTGCTCGGGTACGCGCAGGGCGCCAGGG
ACAAGCGCGTCATCGCCTGCATCGGCGACGGCAGCTTCCAGGTGACGGCGCAGGACGTGT
CCACCATGCTCCGCTGCGAGCAGAACAGCATCATCTTCCTCATCAACAACGGCGGCTACA
CCATCGAGGTGGAGATCCACGACGGGCCATACAACGTCATCAAGAACTGGAACTACACGG
GGCTCGTCGACGCCATCCACAACGGCGAGGGAAAGTGCTGGACCGCCAAGGTGACGTGCG
AGGAGGAGCTGACGGCGGCCATCGAGACGGCGACCGTGGAGAAGAAGGACTGCCTGTGCT
TCATCGAGGTGGTGGCGCACAAGGACGACACCAGCAAGGAGCTCCTTGAGTGGGGATCAA
GGGTCTGCGCAGCCAACTCCAGGCCACCCAACCCGCAGTAGACAGTGGTAGATACACGTT
GACCGGTGATTTGAGTGAGGCATTTTCGATTTAGAGTGGAACGTTTGATCCAGCATGCTT
GCATGCATGCAAACTTCGCATACTATTTCTACGTTCGAATAAGTATAATTGATTGATTAA
TAAAGTTACACGAGTCTTCTTTCTTAAGGCTACTCATAATGGGAGTATCATATGATACTA
TGGTATGATACCATCTTTATAATGCAAAGTATCATAAACTAGTATTCTCATTTATTGACA
TACACGACACATAATAGCATAGCATTTAGGACCAGTTTTTTTGGTAGCTTTTTTGGGTTT
CTAGGGGCAACTTATTCTAGAAGCCCAACTAAAAATATTTGTCTAGAAGCCTAGTAATCA
AGACTTAATTAGTAGGCTTTTAAAAGAATATATTTGATTGAGCTTCTAGAATAAGCTGGG
TAGGGGCAGCTTATTTCAGCTTATTCTACAAGCTATCAAAAGAACTGACCCTTAACATGA
TACGGTATCTACCTATGTTACTCTAACCCTCTTTCTCTTCTTTAATTATATGTCACATCA
TCATGTTTGCTAGTCCCAAGATTATGATACTAGCTATGATACTCCCAGTATGGCCAACCT
AATTTGAGTGAGGTAATTTCGATTTAGAGCCCCAACGTTTGATTAGCATGCAAACTTCGC
ATACTATTTCTAGGGTGGAATAAACAAGGGCGTGTCTAGCTCTCATCTAGATGATATTTA
ACCAAGTCACATCTTACTATTACACCTTTTGATTTCGATGAAGATTCGTGCGGATGTATT
ATTTTTAATTTTTGTTTGATTACTCAAATGACGTGTAGTAGTTAGATAAGGCTTTGTTAT
TTCTCGTCCATATGAGATTTAGTAAATCCGAATAAATAATGAATTGATTAATAAAGTTAC
ACGACTCTTCTTCTTAATTTGTGCGCTCTTTATAGACAAACTGAAGATACGTGTTGCGGG
AGTATTTCGCAATATATTTCAATGTGACTCTTTATATGAACATGAGTATTTAAAATAAGA
ATATAAAAAGTTAAAACCAAAAATACATATAATTTATAACGTTTTATTTCTATATGCATA
GTTGTAAAATGCTCATTTATATATAGAAATACATATAAATAACATAACGGAATGAAAATT
CTTATGTAGGTTTGCATGTTATGATGATTGATGCGTCTTTTTTTTTCATGCATGTATGTA
TAATAATGAAGTGTATGTTTTCATCTTGAGAGGCATATAATAGTGGACTGGACCTTTTCT
CATGCACGTTCTGAAATAATGATGTGACATGTTTGTATGTTGAGAGAAATAGTTAGCGGA
GCCTAACTATTTGGATATAGAATATGCATTTCACAAACTTGGAGAGCTCTTTTGAGTTCT
TGTTTCAACAAGATTTTCTTAATTTTTATTGATTAAAAGAAGTATAACTTGATTTCAGTC
TACATATCCAATTCATATTTTTCTCTCAATTGTACTTTAATAAAAAAGCATGAGCACTTA
TAAAAAGAAAACAAATGTTGCAATTTTTTAACACAATACAATTGCAAATGCTTACGTACA
CACATATAGACTCAGGACGCAGAGTTTCTGCTCCCATGCTCATTTGAGCTCCGTAAACAG
TAAATTTAAACAAAATTGAAACAAATTCAAAAAAATCTGAATTTTTTTTGAACCAAAATT
GATAAAAAATTTAAGTGTGTGCAAAAATTCGGCATGAAATAACATTTCTATAAGGCATGG
AAAAAACAAAATTGATACACTGAAAAGCCTTTTCAGAAGAGGCTTTTCAGTGTGAAAAGA
TTTTTCAACATATTGATTTTGTTTTTTTTGTCATGCCTTCTAGGAATGTTATTTTATGCC
TAATTTTTACACACACTTAAAACTTTTATCAATATTGATCTCAATAAAATTCAGATTTTT
TGAACTTTTTCGATTTTTTTTCATTTTACCGTTCACCGAGCTCATTTGAGCTCGGGAGCA
GAAAGGCACTTTCGATAGACTCACACCTATAAACATACAGACTCTACCCCTATAAGCACC
TTCAAGATGATGAGACGTCACACCATCTTGAAATTGATGTACGATATGCAGGATATATTT
GTAAAATGGACGTGACAAAATAATAAGATGTATGCAACATTAGAAATTAACTTTTGCAAT
AGAATCAACAGACTCGGAAAACACCAACAAAGAGCATTGGGGATCCAAGGTCCACGTGGC
CAACAACAAACCACCCAATTTGCAACGAACGCTGGTACATGTATGCTGTTTCAGATGTGA
TTTCCATACGACACACAGTAAAAGTCGTCTATCAAATTGGTCGTTGGGCATCGGGGCATC
AATGTTAGTACAATACAACAGATGTACAAAAGAAATATCATACGGACAGTGATATTACCA
TCAATATGCACGAGAACTTGGCATATTACTAGCAAAAGGACCCGTGCATTGCAACGGGAG
AAAAAACTCCACACGCTTTTAATATTTTTATAATTATTTTAATTTATTAAAATAAGCTAA
CTAACTAATGAAGTTAGTCCTATCATATTATGCTGAGAAATCAACCCGTCCATTGTTAAT
TCCACCATGATGAGAAAT