morexGenes - Barley RNA-seq Database

Contig contig_2546891

Source Contig contig_2546891

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_2546891 (2857 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location	No map location

Predicted Genes from contig_2546891

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_36500	1	2026 bp	MLOC_36500.1	Available	Available	LOC_Os02g13870.1, FRAME:-1, EVALUE:3e-29, 13102.m01542 protein aquaporin protein, putative, expressed

CDS Structure of MLOC_36500

Contig Sequence (2857 bp)

>contig_2546891 2857 assembly3_WGSMorex_rbca.fasta
CACCCCCCGGCTCGGGCGAGCGCGCGTGCGCCCACTCAGCCGCAGCAGCAAGGACACCCA
CCCGCGCCCCAAGCACCGCCGTGCTCCTCGCCGCCGACATGCCCCGCGCCGAGCGTCGTG
CCCCTGCCGGTCACCGCGTCCTGCGCCGCGTCGGAGAGGAAGATGGCCTCGCCGCCACCC
ACGCAAGCCAGGCTTTGCCTGGTCGCGCACGCCTACGACGGCGAGGAAGAGGGAAGGCGG
GGAGGGACCGCGAGCGGCGGCTGCTAGGGTTTCGCCCTACAGCTCGCGGGAGCGGGCGGG
GCGAAGTGGATCACTTCTCTTTCTCTATTTCCACTTGTTTGATGTCGTTCTGAATACTTC
ACTCATAAGCGAGGTTAGTTTATACTACATTAGAAACATAAGTCAAGGTTGTGGTAGAAG
AGAGCCCTCAGTTGCAGGGCATAACCACTAGTTTCTTTGAAGAGGAAATCATTACAATTA
GAATTAGGGGACCCAATCCTTACTAGTGAAATTAGACAATGAAGAGAAAGTCAAATAAAT
TTACAATGCGATCGGAGAATTACAACATGTCATCGAAATTCACTACCCACAAGCAATAAC
ACTGTGAAAATCAGCTAGCTCATCCTTGCACTTCGTAAGAAGGACCCAGTCCTGGTGATC
TCTCGCAGTGGCTTGTTGGTAAACCGGATGAGGTTGTAAGCCCATGCACCGGCAACAGCG
CCACTAATTGGGCCAACGATATACAACCAGATGCTGGTGTATCGGCCGGCAACCATTGCC
GGGCCGATGGTTCTTGCGGGGTTCATGGATGCTCCTGATATGGGCCTGCACATCACAACC
GTGTCAAAAAGTAAAAACATTCTCTCAACATAATGAAATGATAAAAGTAAATCTGATACA
TTTTATTACTAAGTTCATTTCCTGAAACTCATTGGAGAGTGCAAACAAAATATTATGAAA
TTTCAACCGCTTCTATACACAAATTAATGCTTAGATTCGTATACAAAAATAATTAATGCT
TAGTATGTTTTTCCAAATGTTGATATTGTTAGTAGATTTATCATGAAAAGTACTTCCATA
ATCAACTTTTTACCACCGTGTACTTCTATTTTATTCCTATATGCGGGGACGTAGGCAGGC
CCCAAGCTCTCTACACAGGCCATGGCCTGGGGCATGACAACAACTCCATTCGCTGACCGT
AGCCTCCACGGTCACTGTTCGCTACTGTAGCTGGAAGTTGGGCTGGGGCAACCGTTCCGA
CGTATACTAGTTTTTCTAAGAAAAACAATCTACCTCCTCCGTTTCAAAATAAGTATCGCA
ACTTTATACTAGCTCTAGTATAAGATTATATTAAGTTTAAGATATTTATTTTTGGGACCG
AGAGATTACATCGCACTCTCACTTGTTAGGTCATATGGTAGCTGACCTGGTCAGCACATG
GATTCCACCCCACACAAATATTCTAAGATAATCACATGAATTATCTTAAATAAAAGACAC
ATACCCCCATTGTTTTCAAATTGATTTTACTTGTTCCCAAAATTTATAGGTAATAAATCA
AATTGTATACTCCATAATTGTCTAATTCCAGATTGTAATTTATGGTCATGTAATGCAACT
TAAAATCCTTTAAGTGTACTTTCACATTGCAATTTCGAATAGTTTCCGTGTTTTTTCACC
TAATGACATCTAATTTTTTGTATGCACTCACATGAACAGTAAGATGATACTTTGTCTGTG
TAGGAAAACTAATTTTACCACACCAATTTACAAATGACATGTGATGTACAATAGCAGGCT
GTCCTAAGTTGCGGGACCAACTAGTTACAGTGTTGGTTGACATTGCGTCTGAGTTGTCCA
CCGCATGGACATGACATCTGAGACGCCATGCTGCTTTGTGCTCGAGCTTTTGAAACGGAC
AAACCATGACGATGCAACAAATCACAAGTTTGTTATGCAAATACTAGTATTCTTTGTTCC
TGATAATGCCCACACGTGTGGGCGTTAAGGGGTGTTACCCACACGTCCCGTGTGGTGTGT
AAGGGCGTGTTTGGTTTCAGGATGATGTGGAGTCGGACGGGTTGATTTCATCCCTAACAG
TCGTTTTCGTGTTTAGTTGGGTTAAGAACCGGAATTTGATCATCCGCATGCAGCGAATAT
CCCCTCCAGATGCTTCACCAAGTGATTCCTCCGATTTGCATGTGTTGAAAATAGAAAGAA
AATGTTGCTGAAAATATAAATTATAGGCTTGTCAAATGCAAAAAACTCTATTTGTTCAGA
GATGCAATCTCATCATTTATATCGAGGATGCGAGTGGCATCAAATTCTTCTCATTTCATC
TCTCCAACTAAAGACCGAGACCGAACCAACCCATGATATTTTTTTTATCATCAATTGAAC
ACAAGGATGGAACCAACCCATAACTTTGGAATGGAACCATGACATTCCATGACTTTCGGT
CCTCAAACCAAACACACCCTAAGAGAACAACCCACACGTCCGACCTCCTGCCTCACGTCA
CCGCATGCATGCACGTGGGTATCTTTTTAGATTTCCAGTTTTAAAAATATTTTATCTTGT
AAATGAAAAATCCGATTAAAGATCCGTTTTCATCATTAAATCAATCGCGACGAGATCTTC
GAAACTAGATCTCATATCAATATGTTTTGATGAAAAAAAATCCGGGCAACAGTTGCCATG
ATGTTATACTGTAGTTTCCATGGTGTTTACACTGAAGTTGCCATGATATGTTTCAGCTAT
TTTTTCTTCTACATTTAAAACTAAATTTTGACATATTATAAAATGGGAAATTAAGAAACT
AAACTTGCCATGAACCATAAACTAAAATTGTCATGGT