morexGenes - Barley RNA-seq Database

Contig contig_2546849
Source Contig contig_2546849
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_2546849 (6002 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location
Predicted Genes from contig_2546849

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_36463	2	2184 bp	MLOC_36463.2	Available	Available	LOC_Os05g05660.1, FRAME:-2, EVALUE:4e-80, 13105.m00597 protein PWWP domain containing protein, expressed
CDS Structure of MLOC_36463

Contig Sequence (6002 bp)

>contig_2546849 6002 assembly3_WGSMorex_rbca.fasta
CCCCCCCCCCCCCCCCCGGGCCATATGTCACTACCTGCACATCGTTTAAATTGCATGTTT
GCTTCCCTCGTAGAAGTTGCATCGCCACTGCAGCCAACCATCAACCACCCTCAACCAACT
CATTAGGTACCGTTACAGACCATCGACCACCCTCAACCAACTCATTAGGTACCGTTACGG
ACCATCGACCACCCTCGGCCAACTCATTAGGTCGTGCATGCGAATAACTCACTCTGCTCT
ACTCAATTGGCTAGAGACACTACCGAGTATTGGCACACATAATCAAATTGCACATTTTCC
TCTCCGTTGAACCCTAACCCTAACCGTGACAAACTAAAGCTTACCAGAAAATGCAAAACA
TCAAAACAAAGGATGCCACCGGATTTTACCGTGATGTTTTTTTTATCAAAAAACTAACAT
TAAACTGGTGTGTTTTATTAGCTCACATTTTCTATAGACCCAAGGATTCCCAAATAGGTC
GACCTTTTAAACTGCCTGCTGAATCCATAACAAACGAAAACATCTTAGCAGCTAGAGGAA
AAGAAAACGAAAGCGATTTTCGTAATAGGAGCAGCCTAAACCTGCGGGGTTGCACAAACC
CTCCTTTCATCTAGTGTCTCTCTACCTAAATAATTCTAGTCGAACAGGACTAATCGGGAG
TAGTAGGAAAGGCAGGCCATTCGAATCCCCAAGAGTGTGTAGGAAAAATATTATTCTAAA
AATTGATTGGTGCAAGGGACTTGTACTTTTTGGGGATAAAAAACTGCCGAAGGCATTATA
TTTTACTGTTTCTCCAACCCGTGACGCCTATGGAAAGATGAGGTGCACGTGCGACTGCGG
GAAGGTAGGGACGCGTCAGTTTAGGATTTCCTTACCCCTTGTTCGGTTCCTCTCAATTGA
AGGGGTTTGGAGGAGATTAGGAGGGGATTAAATCTCCTACAAGTCAAATTTTACCTTAAT
TCCCTTCAATCCCCTTCTTGCTGGGATTAACCGAACAAGCCCTTAGCGATTTGTTCCCTC
TCTTTTGCTCAGATGACTTGCATCACTACTAGGTTCTTATGCTTATTTTTTCAGATAGTT
TTGAAAACTGTTCGAAACTTTACTCATATAAAATTCGAAAATATTGCCAACGTATAGAAA
ATAAGATATAGGGCTCTAGAGTCTTGGGTCTGAGACGAAGCGTTCCAACCAGGTTCAGAC
CCATGGCCAGATTCTTGATTCACCATGGGTTCTACTGAAACTCCATCGGCAGGCTAAGTT
CCCACGGAAGTTGGGTATGAGGTGCTAAAGGGGATTGATTCTCCGTTCACCGCAGGAAAC
AGCTGGTGTGGGTAAGATAATGCTAAATTTCTTTGTGTGAATTGCTATCTGAATTTCCTT
GTGGAGAACTGTGACCCGTCCATGTCCAGTGGTGAACCACTTTAGCTTCCAAGGATCTTC
TGTGGCGAGTGAGCATGGCCTATGGACTCGCTCTCAACTCTGCAGGTAAAGCATGGCAAA
ACCACTTCTGAGATTTTAGCAAGGGAAGGGACAGGCCATCAGACACCCCCTCCTGGCATG
GCTTTGATAATTCATACTGGAGATGAGCCATCGGTCCATAAAGTTCAGGAGAAGATAGCC
ATGCGTACTTCTTCAAAAGCTTCTCATCGTAATTGTTGCATGCCTGCATCAGCTGAAAGG
ACATGCTGAAACAGCTTCAGTGGCTTCTTCTGATTGAAGCAGGCAGTGAAACAGCAAGCC
AGAACTGCTCCCGGTGTGAGGCGAAACTAGTGGAAATGGCTCCGGCAAGAATTTGGGATA
GAATGTTTTGGGATAGAATGTTTTGCATGAGGGTGTTTGGTTGGGCTTCCAGCCAGGTTC
CGGCTTTTAAGCCAAAAGCTCCTATTTAGGGGCTTCCGGCTGCAGCTGTGGCTTTCATCC
TTGTCACAGCCGCAACCGAAAACCACAGTTGCAGCCGGAAGCCCCTAAATAGGAGCTTTT
GGCTTCGAAGCCGGAAGCTGGCCAGAAGCCCAACCAAACACCCTAGCACAACGCCTAAAA
TCTCCTGGACTAGACTGCAATTCGGTTTCAAAAGGTGTCGCTAACTCAATTCGGTTTAGA
ACTTGTGTCAAAGCTTAGTCCAATAGTGGGAGATCAAGGTAAGGAGAGGGCAAATGGGTT
AGATAGCGTGCCCAGAGTTGCTGCTGGTCTGGCCAAAGTTTTACAAAAGCTATTGCCCAG
AGTTGCTGCTGGTCTGACCAAAGTTTTACAAAAGCTATTTTGGTGCCGGAGGTATTTCTA
AAGCTTTCACCATCTTGGGACCAATGCATATGTTGGCAGATGTTAACTTCATTTTGGTTT
CTCTATATGCATGACCTCCAACTTGAGAACACTATTAAGAATACTTTGAATGTAAATTGT
TTTGGGATAATCAAGATAACTTTCGGGTTTTAGTTGTCGTGTGCATAGAGATTAATTCCA
CTAAAAGATTAACAGAAAAGTCCTACAGAAATTAATATAATGACTTGAAAGATGCATGTC
TAAACTCACGGTAAACATCCTTGAACTGCTACCTTGTAGATATATATACATGCTTATTTA
TGAACATAATAGATAATAGGCAGTGTACGGTGTTAACTTGATGCCTTCCTTCATGATGTG
CAGGTGAACTCAACCACCTTACCTCTATGCCTGATCAATGATGAAAACGAAATAGTGCAT
CCAAAATATGTACTCCCTCCGTCCCAAAATAAATGACTCAAATATGACTCAACTTTGCAC
TAACTTTAGNACAAAGTTGAGTCACTTATTTTGGGAAGGAGGGAGTATATAAGTACCCCA
AGTCCATCTCCACCAATCACCGATATGTTTTTATCAGGCACATATACGTACCTTCTTTCA
GAATCAATGTTTCTATATTTATTCAGTTCTTTTATCAAACATTCGCTAACACTCTTCACC
AACAACAAAATCAAAAGCTCAAGTTAATGAAACTAAGCAATTCTACCTTAATACGATAGA
GAACGGGTGAAGAAAGGTACAATGTGAACGCAACTGAAATGCAATTCGGTGTTAAACTGA
TGCACACTCACAAGAAGAGGAAGGAGATCCAAATCCTAAATATACGAGATTTAAGGCATG
GCCTTAGAAGAAACTAGATGAGTAGCAAGTACCCGAATCAAGGAAATATATGGATGCAAG
AGAAACATTTCAGAATCCATCCAAAATCCATCATAAGCACACAGAAGCTGCTGCTTTAAA
AATCTATATGCATCGTGGAAATATGATATACATATTCTTGTTTGTTGAACAAGTCCTCAT
TGATCAAAGGATATTCGTTGTTTGCTGAACAAGTCCTCACTGATCAAAGGATATTCTTGT
TTGTTGAACAAGTCCTCATTGATCAAAGGATATTCATACGTGTATAGCTTTTACTTGCTT
TGGATTTCTTTTTTGTATCAAATACAGATTTTACCATTTATTACCAGTATAGCTTTGCAC
AGTTATGCACATGATTTGTGTAAAAAAAATGTTGACTACACGGATAAAAACATTTTTCAC
ATTCATGCAACACACAGTTGAACAAAAGAGAAACAATAAATATTTAAAGAACCAATATCC
AGTTCACTATTCACATCAAAACGATTAGTATATCTGCCCATCAAGTTCAAGTACACAGCA
AAAACAATAACAGAACAGTGAATAGTATTACTACTAGGATTGGGCATGTGAGTGTCGATA
CCTCGTTGAGACCGTTCATTCTCAGCTTTGACCTCGCCTTCAAGGGCCTTCTTCGAATCC
ACCCCAAATGATTCGGCGTAGGTGAGGTCGTACCTCTCATACCTAGACCGGCGGTACGCC
ATGAGCATCGCTGTCATCTCGATCCCAGGCAAGGTCCGTGCGGCCGTCTCCGCCGCGTCC
CGCTGCTGCACGGCAGCGTTCTGCAGGAAGTCAAACATCTTCTGCGGGACGAACCGCTCC
CGCGCGGCCGTCACCTGGTCGGGGAGGTACTCAGCGTTGCTGTCGAACCCGGGCACGTTC
ACCAGGAGGAACCTGGGATCCTCGTTGTGGGAGCGGAAGGTGTCGGGCACGCGGCAGGGG
CAGAGGAGCGCGAGCGCGCTGCGGCGCGAGATCTCGTCGAGGGACTCGGCGACGGCGGCG
GGGAAGGTGCGGCTGCCCCCCTGCGAGGTCTTCTCGGTGAAGTGGTCCTCGAAGCGGACG
AGCTCGTGCGGCTCGAACCAGCCGTAGCTGCCGTCTCCGAAGAAGGCGACGAGGACGAGG
CCATGGCGGTAGCCGCGATGCACCTCCGGGTCGTCGGAGAGGGTGAGGCTGTAGACGTGG
CCCGGCCACCACGGATGAGACTTCACCTTGCCCCAGACCATGTCGCCAAACCTCGGGGTC
CAACCCTCGCTGTCGCCGGCGGGCACGACGGCGCCGGAGCCGGCGGCGGCGGGGCCAGCC
ATCCTGCGGAGGGGAAGCGAAACCCTAGATTTAGGTGCGAGGTCTCCCGGTTTGGGCTTA
CGTTTGGGTTTGGGATTGCGCTGTTTGGGTTTCGGGGGTTGGGGAAATTTGGGGATCTCG
GGCCGGGTGGGAGTGGGACACCGTCCGAGGGGCATCATGGTAATTAGGTGCAGATGGAGA
AACCAAAAGGAAATGATATTTTCCTTACGCAGAGGTGGAGAGTGGCTACGCGACTAATTT
ATACTAGTCGGATGGGCGTAAAACATGCAGTGCGCGGGATAGAATCGCGCGCAATGAAAA
TTCAAAACGATTTGAAATATTTGGACACGCATGGCTTAGGTATAGCAAATATGTTTACCA
ATTATAAGGGACCGCACTCAGTTTTCGTAACCATTGGGCCGCCATTGTTTGGATGTTGGG
CCTTTAAACTATCCCTTTTATTAAATTAGAAGTTAACATTTGTCCATCAAAACAGAAAAA
AGATGAGCCTAAAGATAATTCATTGGTCGAGCATATGAAACAACAACCAAAATATGTGTC
CACACGATGATTACGTAGAGTCGGCATCAGGTATGCCAATTATGTGAGAATGAAGAGCAA
AAACAACACCAGAACGAAAGAAAATGTAACTTTTTAATATGTTACCAAAAACAACAATCA
AAAATTGTTTGAAATTTGTTTTCATGGTTGTAATCTATCCTCTTTTGTTTCCTGACAAGG
CCATGTAGTGGGTAGAAAAAATTTACTATAATGGTAAAAGAATACCACCATAATGGTGAT
CTAGTTTCTAAATTCATCATTTTGTTGTTGTCATGTAGTGATGTAAGCTTAAAGATGTCT
AGAAAGAGTTACCGCCACAATGGTGATGTATCTACCAAATTGGTTATCACTAGCGGTGGT
GCATTAGCTACTAGAGTGCTTAGTCCACGATAGTAGTGATGATGTATTGTCAAATGGTTT
ATTGGAAAAGAGTCATCATACTAGTGGACTTACCATATTTAATTATCATCATAGTGATGA
TGTAGTTAGCATTAGTGGTCAATTTATTAAAGATGTATATACCATGTGAGGTGGTTACAA
TTGCCATGATGTTGTATGTAAGTGCATCCATGTTTCCATAGTGTGTTCTAATTGTCTATG
ACAACTTCATTAATAGGACTAATATAACCAACTTATTCCTAATAGATGTTATCATATGTA
GGAGGATCTTTTTTACCCCTCGGCCTCCAAAAGTTGAGTGCTGCCAAGATTTAAAAAAAA
GCATAGCTTTTCATGATAAAAACACTTGAAAAACCTTAGGAATGATGATACAATACAATG
AGAATGTTTTTTGCTGGATGAATTTGTAGGATCAAAAGTATGTCTAGAGGGGGGTTATAA
GACTACTTGTCAAATAAAAATGTTTTGTTCAATCCTTTGTATATTTTAGTTATTCTAAGC
AAGTCAAGTAAGACCATACACATGATTAGACTACACATGCAATTATAGGCATTGCTGCCT
CTTGAGCTTGCGTNNNNNNNNNNNNNGAAGAGGAAAAGGTGATGTAGCACAGGAGCAGTA
AG