Map Locations of contig_2546740 (11092 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location No map location




Predicted Genes from contig_2546740

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_36393 4 2487 bp MLOC_36393.1 Available Available LOC_Os09g10770.1, FRAME:-3, EVALUE:0.0, 13109.m00952 protein OsTOP6B - Topoisomerase 6 subunit B, expressed
MLOC_36392 4 463 bp MLOC_36392.1 Available Available LOC_Os09g10820.1, FRAME:-3, EVALUE:3e-17, 13109.m00957 protein oxidoreductase domain protein, putative, expressed





CDS Structure of MLOC_36393






CDS Structure of MLOC_36392






Contig Sequence (11092 bp)

>contig_2546740 11092 assembly3_WGSMorex_rbca.fasta
GGGGCTGGCCTGGGTGCGGCTCCAGATGGCCTTGAGGACGACGAGGTGGGAGATCTCGCG
GAGCCTGGGGATGTACTGCGTGCGCGCGAAGATGCCCGCGCCGACCACCGCGATCCGGGG
AAGAAGCTCGCCGTCCCCCGCCATTCTTCTTCTTGTTGGAGTATCGTTTGCCTCACCACT
CAAGTGAAGAGAAAGGCTGCTGCTGAATCAGATCTGATGATATGATGAGGCCTCCTCAGG
TAGTTTTTTCTTTAACAAGAAGAGAATTGCTTGATTAATTATGAAGGCAAATCAGCCTAC
TCAAGCTGTTGGATCCTTCTCGTGTAGCGGTTTGATTTGTCATTGCAATGTCGCATCGTC
CTCCTCCCATCGCATCAACGCTCCATGTTCCATTCTCCTCCAGCAGTAGCTACACAACAA
TATGTGTTGTCGGTGGATAGCATCGCCCGTCTGCTTCACAGCAGGAGTTACACCCCCATC
GAAAGTGTCGATCGCTCGCAGCACTTGTCACACCCTTGTTTCCGTTTGCAGCAGTTGTAG
TCGGCCACACGACATCGTTGCAAGCCATGCAACATCCCTCTGCCACGCCGCATCATCGAA
AATCGCCGCAACGACCAAGGCTTGCAACATCGGAAGTGATGCATCGCAACACTAATAGCG
TCAACGAGTGATGCATCGCAGCACTCGTGCCCCCTGTAGTGTTGTGCCCCATTCGGCTTG
TAGCATCGACGAATGATGCATCGTAACACCGATCACCATCGGCGAGTGTTGCCTCATAGC
ACCACACAACGGACATCCTTGCTTCAAAACACGATTGTCCCTTTTGCAACATTGATTGAA
GAGCGCGGACTTGGGCAGTAGCTTTGGAGAGACACTCGTTCATGCGGAGAGCGACAGGAG
AAAAAAGAGAAAGGTTGAAGACCAAAGGGATTGTGTTCGGGTGAAACGAGTGGCTCATCG
TGTTCCGCGGGAGATGAGATAAGGTTGGACGGCAGGTGGGCCCCACCACCAGGATATGCG
ACGTGCATAGACAGCAGTTGACGTGAGACATGTAATCAGTCAGTTTAAGAAAAACATTTT
CGGCCGATTATCGTAAAATCGGGAGAAAACGGTTTGTTACAACATGTCTACAAGACATGA
CATCACATGTCAACATGAGAGACTCCCACACTTGTTAAAGATACAAACGATGTCAGGATT
GTCTATAAATTATCATCGTCGTTACTTCTCCTTAAGAAAGTGACTCTAACTTCACCAAGG
ACGGCCCACTAAAAGTCCTTCCCTTGAACAACGCATGAAATCTTTGTCGGCCTATGCAAA
AGTTCTCTAAAAAAACTATGTCAAACAATTAGACCGTCATGACTGAAGTCTAGACAGCTC
AGATTCAGCAACGAGTCTCGTAGAAGAAAGAAGCAAGCCTTGACTAAGCCCAACATTATC
ACTGGAGATTGCCAAACACTGGTCCTACCCTTCTCATGGCAGCGTTGCCATGACATCGTC
ATGCACACTACAACCTCGAGTTAACACCACGGTGTAGGAAGCAAGAACAAACCCAAAGAC
AAGCCGGAACAATTCTATTCCTCTCACCATCATCATCACTGCCACACGAGTTGTAACACC
GTCGGATATAAGGTTCGTGTTTTCATGAGATCTCATGGGTAACTTTTGATGGGATCAACA
CTCCCCTATCTCTTTAGGATCGTGAGAATATGCTCCCTCCGTTCTTAAATATAAGTCTTT
TTAGAAATTTTACTAGAGGGCTACATACGAAATAAAATGAGTGAGCCTATATTTTAAAGT
ATGTCTATATACATCTGTATGTAGCAGTGGCGGAGCCTCTTGGGGACAATTAGGGGCCCT
AGCCCCCCTCTTCCTAGAATTTTTTTTGCCAAATAAGCCTAATCGATCTACTAATCTTTC
AACTTCTCTAATCACCTTAGCCTTTTTTGCGTCAGATTCAGTCATCTGGCCTCCTAATAT
TTGGTTCACGCTTCATGTAGTCCCGTATGAAACCTTTAGAAAGACTTATATTTAGGAACA
GAAGGAGTAGTAAGGATGAGAATGAGCTGCCCCCAGCCCAGACCTGGCACTCGTTGGCCC
CTCGGTTTTGTTCGGGGACACGGAGCCAGCCCAATGATCGAGTGATGACCGGACTCATGT
CCCATTGGGTAACATGGTCCACCCATTTTAATACAGTACTAGAATTGCACAAAACAGTGA
GTGGTAACAAAACAACAATTTCCAAATAACATCATTCAGTGGTATGAATTGTTAGCATGT
TAGGATCTCTAGAGTTCATATGTTCAAAGAAAAACAGGGTGCATGTGTTGCCTCATTTCT
ATTTGTAGCATGAACAAAGGCAATTTTGGATCAATACTTTAAAAAATTCTATAAACACAA
AACTAAATGTCCTCACAGATGCATATGCTATTGCAAAGGCTACACAACCTTGGGCAACAA
AAGTTAGGTCGACCCACTTGTCCTGATGAGCAGGTGCTGTCCGGTTTCCTTGCCCAATTT
CTATACGAGGCGGGCCCAAAAGTCCCATTGGCAAATTTTGGGTCGGACTGATGTCTCAAT
GGGTAACATCAGCCCATTCCTATCTTGAGAATACAGCAATCAGAAGAATGAATTCAGCAG
GTGTCCATCAAATCACTTCAGATCTTTCCAATGTACTTTTACATACTTGTTCCCCAACAA
ATGCAACATACAATTACGATCCAGAATGGTTCCACACACAGAAGTTACACCCTCAATTAC
AACTTCACTAAAACCACTTGCGATGTCTATGCTCTCTACACTCAGCTGCAAGCTAAAACA
TCCTAACAAATCATCCCGACAACAATGGGGAAAATGTAAAAACAACTGTGTACGGCGCCG
TTCCATGTTAACACATTATTGACGACCAACCTGAGAACGGAAGGGGGTGTGTCGATTACG
CCTTCTCATGGGATGAATCTAAACACGAAAGCGGGGCTCTGGAAGTCAACGAACTTGTAA
GATCCTTCGAGCGAGTTCAGATAGATTGCTTCGCGGGGCTCTTCGCTCACGCCGCTCTGC
ATGGCGTACTCCAGCGCCATTTCATAGTCAACCTGGTGGTTTGATGTCGGGGCAAACAAG
ATCAATCTTACGATAACAAACCAGAACCGGTGGAAGGTATTACAAATTTTTTTAGTCCAT
GTCGCAATTCATGTCTAGATGTTCCTTTGCACCAAGAAAGGCAGTTGACAGTTATAAGAT
GTTATAATGTAATTTAATAAAGATATAGGTTTGTGTAAACCAGATATGACCTTTATGTGC
AGCAGTGTAGTCACACAAAGGTGCAAAACTATGGGCTTTATAGAGCATGGGATGAAAAAT
ATATATAATGCATATTGCTTTCATGCTTTGATTTATGTTCATGCTAGAGTGTTAGGTTTG
CCCTTACCTGTTCAACATGCTGGGTTAAGCAATCTCTAAAAGTCATTTCTGTCACTTCCT
CCGAATTTATTTTCTCGAGGAGCTCCTCATCTTCCTTGTCAAACCGTGGCCTCTTGGGGG
GAGACTCGTCTGCAAGTTCTCCCAGAGTCTCCATAATTGTCCTTGCCACATCAGGAATGT
ATCTGCAAATAAGAAATAACTAGAGTAAGATAAGACCTTGTCTAATTCTGGTTTACCTGG
TGTCAGCGTCACAAAGCAGGTTCATAAATCAGTCTTTGAATATCAGCCCAAACCTGTTCT
TTCACACAAATATTCCTTAAAATTAAGACTACCCTAAGTTTCCAAAGTGAGCTTAAACTC
GCAATGCATCGTTTATTAACCAACATCCACATTCAACAAGCACTGTCGAATGCATGATTC
AGCAAATGCACTGATTCAAAACATAGCCATAGCAAAAATACAAACAGCCTGACATCTACG
CTCAAACTAGACATCACCAGATCCAAAAAGAACATCCAGTAAAAACTTTTTGGCAGAGGA
GTTACTTGTTCAGGTTCCTTTTCCTGTCCTGCTGTTCACGAGCCTGAAGTTTCTTCACTA
TCTTTGACTTCAGTTGGACACAGCACTGCTTAAGGGCGGACTGAAGGTGCAAGCAGATTG
ATATCAGATGAGTAGATGACCATACAATGACAGTAACTAAGGAAAGTCTGAATGTACCTT
AACAGCATCTGCTATTTCTGTTATATCATCCCCAATATACTCTTTTCCAGTTCCTTTAAA
AGGTATCTTTGTACTGACAATGCTCACAAAGACACCAATCTTGTCCTGCTGCTGATTAAT
TTTGTAGATGCTCCAACTAAAAGGAAGAGGAAGACGAGAGTAATGGAACAGACAAACATT
TGAAGTACAACAGAAGTACTAACAGGAAAAACTTACTTGATCCTTTTTAGGGCAGTTCTT
GTGATGACATCAGCACCTTGCTCAAAAAGAAGTGGAATGCGGTTTGCAAACCTAAAAATA
TTTAGACCCTACAAAAAATGCAAGAACTGCTATCATCAGAAGGAAATTGATTGTTTATGA
ATCTTCTAGGCAAGGAAAATATTAACAATGGAAAGGTAATTCCCTAGTATTAAACTGGAG
CTCGGGGTGTGGTATTAATACAAATAAGAGGTTTAGCCGTGTGATCAAATGTTTATCCAC
TAAATCAGTAAATGGAACGATTCAGGGGTATCTTGAAAATGGAGGTAACTTTTTCTTAAA
TACCACATGGGCCACACTGATGTCAACAAATGGCCACACATTTTGTGGTCTGCTAGTTGC
AAATTCATAAGGGTGTACTTTTTATATATAAAATGGATCACCGTTTGTTGCAAAACAGTC
CTTTGTATGAGTTTGACTATATATAATGTATGCTAATGTACTTGAGAAAATAAAAAAACA
GATAGAAAGAGCATCAGCAGAAAACTAACAGACACTTCATATGAAATAAGAAATGATAGA
ATGAACTACTATCAACTTTGACATTCAGAATAGCTGCCATCACACACTGTAAGCAGCTAC
AAGAAAACAAAGGTGATCAATGCTGGGGTGTAGGGGCATAGGAGGAGAGGGTTGTAGACT
TGACTGGGGAAGAAAAATACAGGACAGGGAGGATAAGAATGGCAAGGAGGGTGGGAGCCA
AGCAGATCATGGGGAAGTATAGATACATGGCCCAGTGGGGGTAGACAGACAGGGAAGAGG
TGTACAGATATAGACTGGGATAAGGGCACTAGATTGTTTCTTGCTTGAACCGAAATGGAT
TGGCCTCCCCCTTTCTGGAGAGATCCCCTAACAATATAAACCATTCAATCCACCTAGATC
ACTAACTGCTTGAGCAAATTTTCAAAACCATGTCATCTTATGGGAGCCGACTACATCACA
AAAACTAGTTCTCGGCTTCTCTCTTCAAAAAGAACTCTGGAACAGAACCCACTGAAATAA
CTAACTCATCCTGAACTTTGTGGCTGCTGCTCAGGTATGTTGTTCCTCCTTTATCCAGAC
CACAACAAAAGGAGCAAGATAGAACATGTTTCCACGATATTCTTTAAGATGACAGAGACA
GAAAATACTCCTTGTGAAATACAAACAACAGTTACTCCTTGTGAAATACAAACAACAGTT
TCTTACTTGTTTAACATCTTTCCCACCAATGCTTACTCCGGCTTCAACAATAAATGGATG
CCCTTCAAAAACCTGAGGACTAAACAGACGGGTAGCCTTATGACATTAGGATAACTGAAC
TGAAAATAAGATAGAAACACCATCTGGGACATTCTCTGATTAAACGCTATACCTGCTTGC
ATGTGTCGCAACCAGATCAGGGTGCAGCTCTTTTATGATACCTAGACGTAAATTGTATTC
ACCTGCAGGACTAAGACACTATAGAATTGGTTGGTTTCTATACTGTGATCGCTAATTGCA
CATTTGTGAAAGATAAACTAGTCAATAGGCAGCTGATAAGTAATTAGTAAATCAAGGAGA
AAAGGGATGCATACATTGCCACTGGGATCATCAAACTTAGCCTGCCGAAACAACTGATGT
ATTCGTACTAACTGTTGTGATGTAAGGCTGTTGACTGTCGTTTTTGCATTAAAATCAGGC
CCCATCTCACCTGTCAAATTGGAAATTTGTGATATGCAAAATAAAATTGGTAAAGGTATC
AACCATAGGTAGATTAACAAAGTGTGTAATGACAGTACCACTAAATATATTTAACTCAAG
AGACAGGATTCACACAGAACTGATTCGACTGGAAGTATAGTATATTGGAAATAGCAGCAC
ATGAACATAAGTCAAACTCAAAACCATGTATAAAGCAAGAACAAATGTAACCACCAAAGA
TATTTTTACTCCAAATCTTCAAAATATATAAGTTTGGAAATATGAACCATAGAAATACAT
GGTTATCAAAGAAGATAGTGCTTAAGTCATTTGATTTTCAACCTGGCAACCCCACCACCA
CCACCACCACCACAAAAGCCCCAGCACACTGCATATCACACAACTACGTAACTCACCGAT
TAAACGGTCAGCATGTGCTTTGCTTATATTCACAAATTCATGTTGCAGAAACTGCAAAAG
GTTTGGCTTTGTAGTGTCTGTAATTAAGCGCTTTATCAGCAGCAAATCAACGGCAGATGG
ATGATGCTTTGTCAGAAGTGGAACAGGAGGCATAACATCTGTCCTTCTTGCAAATTTTAT
CGTCAAATTTTTTCTGCAATAACCAGAGTCATTATGCAAAGAATTAGAAGATTATTAATT
TAGCAGAACACGGAGTAACAGAGAAGAAAATTCATACTCTGCTGCATCTGAGAGGAATCT
AAATAGGAATTGAGCATATGGAGTAATGACAGCCATCTGTCGCATGTAATGTAATATCCT
TGACTGCACAGAATAAATTATAAATCTGCTTAGTAGTGATAGATTACTATTTGAGTTTTT
AAAAGAAATGGAGATCCTACTTACCCGATGAGTTGTCCAGTTTCCCTCAATAATAACTTG
AATCTCTGCCCCATGCCAATGGCCATTATTCTCACGTTTCTCATGTAAATGAATATGAGG
GACATTTCTGGGTAGTAGGATTTACCATTATTAGTCATGGTAAACTGCAGAGGTTAACCG
ATCAACTTAATATGAAGATAAACAGCAATGGCCAGTCATTCACTGTGTTGCACAGAGCAT
TGACCAAGAAGCAGCACTTACTTATGAATATCTATGTCAAGTCGACAGAACGTAATATAA
TCTTGGCCTTTCATCGATGACTTAATATCAATAGGAAGGCCCGTACTCATCTTTGACCAA
ATAAGTGCCTGTTTATAACAGATTAAATTAGACAGAACAGGCAACAAAGAGTCTTAACTC
CTGACTGCAAACATGTTCATAACTACTCCCTCCGTACCAAAATATAAGACGTTATTGCAG
CTCAAATTGAACTGCAAAAAGTCTTATATTTTGATACAGAGGTAGTACAGAGTAACATAA
TAAGGTAATCATTCATCAGAATATCCATTGCAGGTCCAATGTTCAAAGTATGTTTTTCGC
GGCTAGTTACTCTTACTCAGCTGAGAGGCAAAATGTCATAAACATTGTGTACGCACGGGA
CAGCTTAACCATCAGAACACTGTTGAAGGTTAAAGGTTACACACAAATTTACTGAGACAT
AGGACAACTGTTGTAACTAAAATGTTAATTTTCGTTTTACAACTGTAGCTCAAACTTTCG
TTTTTTCTTGTAATCATATCTCTAACATGGCTATACAGGACCATCGTGAAAAGCAGCACA
AGATGATCAATGTCTCCAAGCTACCAACAATACTGCACGGCTGAAAATTGTCATTATCTA
CTATAAACAAGAAAGCTATGAACCAAAAGAAAGAAAACAAGTCCTGAACTTCGTTATGAG
ACGAGTAAAATTCAGCTAAATGTTTGGATCCCATTGTTTCTTTCAAAAGGAATGGATGCT
ATGCATTCTTATGAGAGGCTCATTCGTGGCAAACAAAAAGGTTTCCTGCTTAATTGTGTG
AAGAAATTTTACCATTTTAGCACCAAGTCCAAATTTTCCACGCGTCTGCCTCAAACCATA
TTTTGTTCCCGATAGCACTGCATCAAAATATTAAATACCAGTGATATTGCACAGCATGCC
ATTATACCTCCTTTACTGTTTTATTTTAATATAAAATAAATTTGATAGAAAATATCATAT
TGAATGCTTACCTCTCCCAAACATATTTGGGATATCTTCATGCGGCATACCTCGGCCATT
ATCCTACACCGACAAAACATTCAGGATTGTTCACCAGATAGATTCTCTTCATGCAAGTAA
AGTCAATATGGACAATACCTTGCAAGTCACTCTGAAAAATGAAGCCTCGCCCCGACCTTT
TCCACGAGCAGCTGGGGTGTCCTTAACTTTCTTCCCTAGAGCAGCATTTTTGGCTTGTGT
TTCTTGGAAACGTGCTTCTTTAGCTAGGCGTTTCTAAGTATTGAGAAGTTTTACAGTAGT
ATCAGAATAAAGGTGGATAATCCAGACAGATAAAAACGTGTCAGATAAAATATTCATATT
GAAAATATATCATAAGTATGCAAACCTTGTTTAACTAATAATGACTGAGCTAATAAGAAA
ATTGCAAGTGGTAGTATTACCTCACGAGCCTTAGATGATTCAAAATCATCATAGAGTGCT
TCATCAACGCGTTCTCGATCAACTAGTCCTATCATTGTGTTGAATTTGCTCTTAGTGATC
TCTTCTCTGGCAAGACATGCAAAGGAATCCACAGAATGTTGTTTGACATTGCCAAGCGAA
AAATAACCCAATAATAGAAATGCTGCTGAAGAGCACTTACATAGTAATTTCTATATCGGG
GAGCTCAGAGATGGACTCGGCTGAATCAAGAGCATTCTCAACTAGCTCCCGCATTGTGGT
GTACAAAGATTTTCCAGGCTGCCCAATATTATAAGTCACTGAAATGAGTTTGCTGATACC
TAACAGAAATTACCTCCAAAACTATATCACTGTTCATCCATCGTTTTCTAATTGACAATG
TCATTCGTATTTAGTCCCGTTCCTTGCAGTACGTTTCATGTCAATTTTAAACAAGACTGT
GCTTAATCCAGGGACGAACAAATGGCATGGCATCTATCTAAGCTTCACAGGGCAATGATG
TCAACCACTAAGCCAGAGTGAAAACAGACAGCGAGTTAAACAGCTCACATTGTCAAAACC
AGCGATGTTCTTGTTTTCCGCAAAGAACTCTGCGGGCGATTCTGCAACACAGAAGCCCCA
AAAGGATCCGATTCAGCCGATAGAAACGATGCAAGGACGGAATTCTAGAAGAAAACGGAA
GAACAAAGGGGGTTTCGAGGAGCTGACTCTGCTTTAGGAGGCTGCTCTCCTTGGACTTGG
GCGCCGCCTTGGAGGCGGCCTTCCCTTTTCCCGTCGCCTTCCCCTTGGCGGCCGCAGCAG
CAGACTTCTTCTTTGTGCTGCCGGCGGTGGCTCCGCCGTCGCTGGAGTCGTCCATGGCGA
AGGTGGGTTCTTGGGATCGGGATGGTGAGCTAGGGTTTGTTTGGGTTCAGGGGGCGGGGA
GTGAGGTTCAACTGCGGGGGTGCTACTGGCAGTCTGGCAATGAAAGTGGGTCGATCCTGC
TGGTCCATGGAAGAATGGACGGCCCGGATAATTCCCAGTACAAAGTTGAGCAAACTCTGA
AACTCGTTTCTTTGCGGGCACCAATAGGATTCCCTTGCCAAATCTTAGGTTCCATGACCT
TTTCGGGTTCCCGCTGCTCAAAACTCTTCTTTTTATGTGAAAATTGCTGTCTTATTCAGT
TATGTTTCAACAGCAAACAAATTTATAAACCATACAAAACATCTTTCTGACTAGCATAAT
GTTTTTTATGTTAAGAAAAAACAGCTATAATTGCACATAGGTCTTTGGGGCAATCAAAAA
TGTCTTCCTTCTACACTCATCGGCGATGCACCATAAGCAAAACCGATGTCGCCTCGGACC
TCCAAAACACCATGGGAGCCAGAAAAAAAACGGTTGTTGGAAAGTCGTTAGCGAGAGCGA
GAAGATGTCGTTGACAATGATATAGAAAACATGTCACAATCTAGAGAAGAAGGCGATGAA
AAGGATTGGACGACCTTTACAGATCCGACAAGACATAACCTCACAAGCTCCGAGACAATG
CATAATCCGTCGTTGATCAAAGATGGAGCCAGAGGACCAACACATGAAGAATTGTTCACT
CGGTCCAAAGATCTTTTGAGTATTTTCCACCAAGTGACTATGTCTTATATGTTACTTCTG
AGGGTGTGCGCCTCAACCGCTATGGGTTACTTGAAAGCCTTCATCAACGATATTATGAAG
GAGACAAGAGTTTGTAAAAGGCACGAAGATCGTCTAGTGACGAGATCTAGACTTGTCTCT
GGGACCAATATTAGGTTGTTGTGCGCACTTTTCTCACTCTTGTGCATCCAAAAAAACCTT
ATCAGTCACTATCGATGCATCCTCAAATTCCCCCAAACTAAGCAAGCCCCCCAAACTAAG
TAAGCTTAACATGAAGGTTCATTGGAGACGAGTTTAAAAAAATGTACACCATATTGATAT
GGGTTGTCTATCATTTGTATTAAGTCGGGGTGTCACATACACACTCATTCAAGGAGTTGA
CATCCTCGTCCGCTTGGTAGGAACATTCCCTAGCACATTGTGTGTCCAATGTCAACATAT
GTGTCATGATGTGTCCATGGCGGACCATGTGTCATACGCCACATGCGTGTGCCCCTATCC
CGCAAACGCATGTGTAACCATGAGGGTTGGTTCTGATACCATTTATAATGTCCTCAACAC
ACCCATCGATTCCCAACCATTACACCCAGCGGGGTCTAGATTGGTCCAGCGGACCAATAC
TAGTCATTTATGCGCGCTTTGTTCTCACTCGTGCACATTTCAGAAGAACTTCTCTATCGG
TCGATCACCCCTAAGTTACCCATACTACACACACATTGTTAGAGCATATTTCTCCATNNN
NNNTTTTGGTAATTGATGACAACCCCTATGGACTAATGGTTGTCTTAAGTTATATTTATA
TGATTTGTNNNNNNNNACTTCTTGAAGTCCCTCTGTTGGGTTTAAGGAGTTT