morexGenes - Barley RNA-seq Database

Contig contig_2546684
Source Contig contig_2546684
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_2546684 (6279 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location
Predicted Genes from contig_2546684

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_36363	1	1187 bp	MLOC_36363.1	Available	Available	LOC_Os07g47990.1, FRAME:+2, EVALUE:3e-169, 13107.m05126 protein peroxidase precursor, putative, expressed
CDS Structure of MLOC_36363

Contig Sequence (6279 bp)

>contig_2546684 6279 assembly3_WGSMorex_rbca.fasta
GACTGCAGTTTGCCGGCGTGAGTGGGCAGAAATCCTTGGATTGGACCCATACGGCTGAGG
CAGGATCACGGGACGTCGCTCGCCGCCTTCCGCGCTCCGTTGAAAAAGAGAGCACCCCGA
CCACGCCGTAGCTCTCGCACGCACGGAAAATTCAGTAGGAAGCTACTGAATGGCATCCGA
TTAGAGGACGAAGCTACTGGTATCGTAAGAATCCAAATACTTATATGACCAGGCACACTA
AATACAGATAGGCTGAAAAGTCGAACACGCATGTGTTCACCTGTTGTACCCAGCAGCTCA
ATTTTCAGAAGAAATAGTAGCACTGGCATTTAGAAAGAAAGAAGTGGTAAGTTGAGGCAT
GACAGATACCAGAATACATTCAGAGTAGTTAACGTACCAAGTGGCCACATGTGCCAAGTA
GTAGACAATGGAGGAGCCCTTTTTTTTGTTGCTGCCCGCAACGTCACTGCCGCACTCACT
CGCCCTCACTATCCACCAGAGGATCATTCTATTTTTGACAAAACCTGACCCTTTTCGTGT
GATGCCAATCAGACCCGTCGTCATCGGTCGTCGCCGCTTCTGCTCGCTCCGTGGAAAATT
TTGACAACCGAACGAGCAGCGCCGCGTGCTGAAAACGATCGAATTATGGATCCATGCATG
CATGTTTGGTGCGAGATCGATTGCCGTCGCCGTTGTTGAACGGATGGATTGTTTTGCACT
GTTTTCATTTGCAAACTGACAAATAAATTTTGAAAACAGTTGCCAACTAACTATTAGAAA
ATGTAGTCGGCCAGCCAGCTGTGGTGATGGAGCCATCTTTATCTTTAAGTGGAGAGTCTG
GCATGATGGCCTTCTCTAACTTACAAACTTCTTAAATGCTGGAACTGATCACTGACCCTC
GTTTGAATGCCATTAGCAGTTGTAAGTAGATGTCTGACAGCACATCACTTGACAAATAGC
TCCCTGTTATGTACTGAATTGTTAACAAGCGATATCGAGTTTAATGAACTTCATACGAAC
TCTCATAAAAAAGGTTCATATTTTCCTTCACCTACAGAGTGTTGCGATCTGTGGGAAGAG
AAGCACGGGTGTGATTTTTACGAAGGGACACAAATGACCATAATGAATGATGTGTGTCAG
TTGTTACCTCCCATGGGTTTGGTCAATTAAATTGAATAGATGATCTGAGATACAACGAGA
TACTATCGCTTAAGATAATTTTAGTGTTATTGTGAAACATTAACTAGTTTTACAAGTTAT
TTGTGAAACTCGTTAGCTCATCGTTAAGCTAGTTAAGCTAATGAGCTGAAACCAAGGACT
GACCCTATTCATTAAAAAGCAAACAACGAGCTTAACCAATCGAGCTATCGAGCACTCATT
TTACTCTCGAACTAACAACAGCTAAGGGCTTTTGGTCCAGCCCGCTAGATGCAGAGACTA
ATGTAATTGATATGCTCTTGATATTTACATATTTACTTTATCGAAAAATATGAAAATATA
GCGGTACCCTACAATGGATCAGTGATCAACGTGTGATCCCAAACTTCTAGTCTGATTCAA
CATACAACTTTGTTCCCGAAAAAAAAAATACATACCACTTTGTCAAAAAAATAAAAGGTA
CTGTATTAACTTAAAGGATGGAATGATACATATAGTAAAAAAAAAGAAGGATAAACACAT
ACACACATACACGAAACGTCCCTGCAGATTAGTACCGATACACAATATATATTACTTTTG
TCTCCACCTGTAAATCTCGATCACTCAAATTGGTTTTTGACACCTCTCGAAGAAAACCTA
ACTACGAGACAAATTTCGCATGGCTGTCTTGCTGGCATACCCCTGTTGACAACCACATGT
GTTCAGTGGAAGAACTGAGTTTTTCTTTTGCTCTAACATAGCAATGCTTATGATTCATGA
TATTTTCCAAGTCCACGTTCCTTAGAGTATCTATCTATAGCTGGACTTGGTAATCCGATC
CATATATACACGTGACACGTCTGGGCACGTCCGCAGATAGCGTTTGTCGGTCTCTTATAT
GTTGTATCACACATCCATATATCTCAAATGAAACCTTAAAATCCATACAATTCATGCACA
TCGATCATCCGATACAAATTATCTGAATTCAACAGTTCGAAAGAAATCAAATTAAAGCAC
GATTCAATAAATCGGACATGGTAAAATGAAATATATGTACGAGCGAGAAGGAATGCTTGT
CGAATCACTGGTCGGACGCGCTCATCCATATGTCCTACTCGTCCAGCTTGTTCTGCTCCA
CCTGCATCTGGGCTTCTTGCTCCACCTATATCTGGGATGCGTGTTCCGCCTGCATCCTGG
TCGCGTGCTCCGCTCCGCAACCGTCCTCGCCCCTCCTGCGCCCTACGGTCGTTGATCTCC
TTCTTCTTCTCCGCAAGCCACTTCTTCGCACGCGTATCCAAGTAGGTTTCGTTCGCCAAC
ATGATCTTCGCATCCTCCTCATCCCATGCGAGTTGCAACCTCTCCTTTCTCGAGCTCAAT
CTCCCCAAATGTCTTGGCCTTCTAGAGTTTTCATTTGATCGCCGCCTCTTGCGTCTCCAA
CTAGATCTACTCCCTCTCAATTTCAAGCCTCCTCCCCGCCCCTCGACCGGTCCCACTCCC
CCATATCCTCATATTTGGGCTGGATATGTGTGGTGCCGGTCAGCCCGAGCGTTTGAGACA
CATTTGTGGGGTTTGGCTGGGTCGAAATTTTATGACCGGTCAGTGATCGATCGATCTATC
CGGAAGTTTGAGACAGATATGAGGTATGTCCGGTTCTAGATGCTCTTAGTGCAACTAATT
GTGAATATGTATTTGGAAGCCGAGCTCCATGGAGCTTGGTTTTGAAAAAAAAATCAAATT
TCATCAAATTTATATTTTTTACGGTTCAAAAAATTCTAAAGAAAACAATGATATACATGA
AGACATAACACACGTGTGTGTAAATTTTGAAGGCAAAATAAGTTAAAATGAGAGCTGTGA
AAAAACACAAATTTGAATTTTTTAACACATCACACTATTCATCCTCCTAGACCATGAATT
TATATTATTTGTACATGTAGCATTTCAAGGTTTTTCATTCTAAAATTTTAGACACATACA
CATAACATCATTTTTACTTACACAACATTTTTCACATTTTTTGACACCGAAAAGTTTGAA
TTTTGATTTCTTTTTTAAAAAGGCCTCCATAGAGGCCGAGAGCCAAACGTCCGTTCTGAG
ATAATTGGCAATCTTAACTTATAAACATCTTACCCCAGCGAAAAGAAGAACTTACAAACA
TCTTAAATGTTGGGACTGTTCACTAGCCCCGTATATATGAGTACCATTAGCAGTTGGAAG
TCGACGTGTGAGTGTGTGACAGGGTGACAGCACACTGCATGCACACGGGACGAAATGCTG
CGAGAGTAGGCTTGTATAATTTTTCTGTTTTTGCGGATGTACGCCATTGTGAACACACTC
TTCTCCTTATTCAATGAATATGAAAGTCTTTTGTCTCGTTTCAAAAAAACTAATTATCAA
CCTTTATAGTAGAGAATTTGACGTCCAGGACAAATTTTGCATGGCTGACATGCTACCCGT
TAACAACGACATGTACTCTATTAGGTGGAGGAACGATTTCTGCCGGACACAGTAATGCTA
GCTTCTGATTCATGCAAATATCTTGTGTGATTGTGTTTATGCAGAAAATGTATTGGGTCG
TGCAGCATTGGTGCCTTTAACAGCTGAACAACTTGGCAGGTCACATCTCTCGTATTTAAA
ATAAGTTTTTGCCTCGCTTTATACATAAAATAACGGTTCATATAACCAACATACAAGTTC
AACCACAGATAACAGCTTGGGCAACGACACACTCTAGCCCAAAGAAGTCAGGTCACACCC
GCAAAAAAGAAAAGAAAAAGAAGAATTTGGCAGGTCTGCAAGCGGCGTATACATTGCATT
GGTGAACACTGCCAGGGCTAACCAACTAATATTCCCAACTATTTGGTGAGTTACGATAAG
TGCTGTGAGCTTGTGGTGCCTCCTCTATCACAACCCTAGACTACTAGCTACCCAATAGAT
TTCGCATTATTCATTGTTGCGTTGCACTACGAACACTATACCAACCAAAATTTTCAGTAC
CTGTTGTCATGTTACGCACCAAATGGACTGTCACGGGATGCACGATCGCTTGAATTGTCA
GCTATATATAAACGGGTGTATGTGGTCATGTTAACGCAGGCCATTGCTTAGAGCTTTAAT
CTGAACAGGATTAGTGTCAGCTTGCACACAGAAGTATAGTGCTGGCAATGGCCTCTTCTC
TGTCAGTGTTGTTGCTCCTGTGCCTGGCGGCATCGGCCTCGGCGCAGCTTTCGCCGAGGT
TCTACGGGAGGTCGTGCCCCAGGGCGCTGGCTATCATCAGGAGGGGTGTGACGGCCGCCG
TGAGGAGTGAGCGCCGCATGGGAGCGTCGCTGCTCAGGCTGCATTTCCACGACTGCTTTG
TCCAAGCAAGTCCCTTTACTTACTGCTAGTGCTAGTACTTAATTAAGTAGGTCTCCTAGT
CCTATATTAACCAGTTAATCACACTATCGTCAAAGCCATTGCAGTATCAAAAAGCATGCA
TTTTTTTTAGAAAAGGAGGATTACTCTAGAGCATGCATGCATGCATGGCCATTCTAATCA
ATCTGACTTTTCAACTCTCTTTTTTGACAATGACTTCTCAATTCTTCGGTTCAAATCAAC
TCGTAACAGAATTAGAATGAACTGGATCTATGTTGATGGAAGTAACTTCTTAATTCTTAT
GTGTATGACGATCGATGGATCAGGGCTGCGACGCGTCCGTACTGCTGAGCGACACGGCCA
CCTTCACCGGCGAGCAGGGGGCAGGTCCCAACGCCGGCTCCATTCGAGGCATGAACGTCA
TCGACAACATCAAGGCGCAGGTGGAAGCCGTGTGCGCGCAGACTGTCTCCTGCGCCGACA
TCCTCGCCGTCGCCGCCCGCGACTCCGTCGTCGCCGTAAGATCGATCGACTGCAGTCAAT
TCGCTGAACGCACGCGACCATAGAATTAAGTACTAGGAGTAACTTGGTTCTGTGTTAATT
GTTTCAGCTGGGAGGCCCTTCGTGGACCGTTCCCCTGGGGAGGAGGGACTCGACGACCGC
GAGCATGTCGCTGGCCAACAGCGACCTGCCGCCGCCGTCCTTCGACATCGCCAACCTCAC
CGCCAACTTCGCCGCCAAGGGGCTCAGCGTGACCGACATGGTCGCCCTCTCCGGCGCCCA
CACCATCGGGCAGGCGCAGTGCCAGAACTTCCGGGACAGGCTCTACAACGAGACCAACAT
CGAGACGGCCTTCGCGACATCTCTCAAGGCCAACTGCCCCCGGCCGACCGGGTCCGGCGA
CAGCACCCTGGCACCGCTGGACACGACGACGCCCAACGCATTCGACAACGTGTACTACCG
CAACCTGATGTCACAGAAGGGGCTCCTGCACTCCGACCAGGTTCTGATCAACGACGGACG
CACCGCCGGCCTGGTGCGGACGTACTCGTCGGCGTCGACGCAGTTGAACAGGGACTTCGC
GGCGGCCATGGTGAAGATGGGGAACATCAGCCCGCTCACCGGGGCGCAGGGGCAGGTCAG
GCTCAGCTGCTCCAGGGTGAACTAATTAAGCTAGGGATCCAGCTAGAATCCCGGGCGATC
AAACGGCGACGTACACAATAAGGATGTGGAGTTATTGTATTTGTGTACTGTTCATGTACA
AGAACGTTGTGTCATTTCTGGAGTTAATTGCAGAAAACTTGTTAGGATTGTAAGAACCAC
AAGTCTACAATTTTATGCCAAAACCACTAATTTCAAGTTTTTTTTGCAAAAAACCCTAGT
CGTTCGCTTCAGCCGTTTAAAGTAGGATTATGACATGTGGGATCCACTTTAGTCGACGTG
ACGATCCTGTTCATTCGACCGAGCCGTTTAACGCCGTTTTGACGCCGTGCGCCGGGCGGG
CCGCTCTCTTTCTTGTCTCTTTCGCTCCCCGCCTGCTCTCCTTCCTATCTCTTTCCCTTC
CCCGCACCATCTCCTCTCACAGACAGCAGCCCCAAAGAGATGATCCGCCATCGGAGGCGA
ATCTCTACGGCAGCTCAAACCCCGGCGCCCCTTCGGACAGCAGCCCCAGCCCCAGCCCCT
AGCACTCGCTCGAATTTGCGGAGGCTAGATCTTTGGGCCTAGGGCCATGAAGGATCACTA
GTAGAAAACGGGCATTTGGCCTGGACCATTTAGTCCCGG