morexGenes - Barley RNA-seq Database

Contig contig_2546669
Source Contig contig_2546669
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_2546669 (8464 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_2546669

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_36358	1	1654 bp	MLOC_36358.1	Available	Available	LOC_Os07g43070.1, FRAME:+3, EVALUE:6e-158, 13107.m04525 protein expressed protein
CDS Structure of MLOC_36358

Contig Sequence (8464 bp)

>contig_2546669 8464 assembly3_WGSMorex_rbca.fasta
TGTTGTCTGTTGCCGTAGCAGAAGTCACCAAAGTGGCATTAAAAATTGTTGAAGGGGAAA
AATCTGCCGAGTGCATCAACGAAATCATCTTGGTTTTAATACCAAAGGTGAAAAATCCCG
TCTTACTCACTCAATTTCGTCCAACCAGTTTGTGCAATGTTTTGTATAAAATAGCTTCGA
AGGTTATCTCCAACCGATTGAAGCTGGTTCTACCTGATATTATCTATGAAGAGCAATCAT
CTTTCATCTCGGGGAGACTGATCACCGACAATATAATCACATCATATGAATGTTTACACT
TTATAAAGATGAACCAGGCAAAAAAACACCAATCATCTGCCTTGAAACTAGATATGATGA
AGGCATATGATAGAATGGAATGGCCGTACTTAAGGGCTATCATGACAAAATTGGATTTCA
CTAAGAGATGGGTGAATATTGTCATGAATCTAGTCACCACTTTGAAGTCTTTTGTCTTGT
TTAATGGGAAGAGACTAGATGAGTTTTAAGCCATCATGAGGAATCAAACAAGGGGATCCA
ATTTCTCCGTATTTGTTCTTGCTAGCATTAGAGGGCCTATCGTGTGTGTTTAAATCAAAA
AGTGAGTCATCCAATTTGAAGGGGCTACAAGTGGCATCATTGGCGCCACCAGTAAGCCAC
TTATTATTTGCTGATCATAGCCTAATGTTCTTCAAGGCGATGAACCATGTTCTCAACACT
TATTGCCAAGCCTTAGGTCAGCATATAAATCATGCAAAATCTTCTATATATTTCAGCAAA
GGGGTGCCTCAGAGCATCCACAATGAGATAAACGTTCTGTTAAACGTCCCAAATGAAACA
TTGAATGAGCAATATTTGGGCATGCCTTCTAGTAAGAATGGGCCCTTCAAATATCTTAAA
GATCTTGTGTGGAGTAAGGTACATGGATGGATTGAAAACACCACGTCTTATGCTGGGAAG
GAGGTACTTGTTAAATCTGTTGCCCAGGTCATCCTAGTTTATTCCATGTCATATTTTGAG
CTCCCAAGAGGTTTATGCGAACACCTTAATAAGTTGATTCAGAAAATTTGGTGGGGTAGC
AAAGATGGTAGAAACAAGCCACATTGGGTTTCTTGGAAGACCATGACCCAACCAAAAGGT
ATGAGTGGACCGGGGTTCAAGGATTTTGAGTTGTTTAATTTGTTAATGCTTGCAAGACAG
GCCTGCGCCTTTTACAATATCGTGACAGCTTGGGCGCTCGAATGCTTAAGATCATTTATC
ATCCTAATGAATCAATATTAGCTGCCTCTCTTGGAAGCCATCCAAGTCAGATTTAGCGAG
CTATCTGGAAGGGCGGAACAAGTAAGGCAGGGTCTGATCCATCGTATTGGCAATGGACAG
AGCACAAAGGTATGGGACGATAATTGGCTTCCGAGAAGCGAGATGATGAGACCCTACAGC
TGCGTTACAAATAATCCGCCGACTCTTGTTTCGAAATTAATTGATTCTACCTCTGCAACG
TGGAACAAGCAGAAGGTTGAGACTACTTTCTTGCCTATGGTTGCGCGAGTCATATTCGGA
ATTCCATTGTGTACATGGAATATGGATGACTTCTGGAGTTAGTCGCAAGGGGAGAACGTG
ATTTTTTTGGTTAAATCTGCTTATCGAATGTTGGTCCAAAGAAGGTAAAGGAGAAAAGCA
TGGTTTGAGAACATATCCGGCTCCTCCAATTCGGCCCGGGAGGAGGGAGTGTGGAAGAAG
TTGTGGAAAACGCAAGTCCCAACAAAGGTTCGAATGTTCATCTGGCGCCTATGAAAGCAA
TCACTTCCAACAAACGACGTGAGGGCGCATCACCATATGGCAGATTCAGGTCAGTGTGGG
TTATGTGGCTCCCCGGACTCCTGGAGGCATTCGTTATTGGATTGCACGATGTCGAGGTGC
ACATGGGCACTGGTAGACGACGAGCTTGTTCAAGCAATAGCATCATCGACTATGCCAAAT
GCAAAAGAGTGGCTCTTCACACTCATGGAATCGTTATCGCATGCTCTCTTTGTGAAGCTG
ACCATCACGGTGTGGGCGATATGGCCGACACGTTCGAAAGCCATACATGCGGGGATTTTC
CAAAGGTTGCAAGCCATACATTGCTTCATTCACACGTACATCTAAGAGCTAGCCCTCACA
AGAGAGACCACGCCATCGCCTCCATAGAGAATTGGGAATGCTTCGTCTGCGACAATGCAC
AGGCCAAAGGCCCCTCCAAACGGCTTTGCGAAGATACATGTCAATGCAGGCTGTAGAAAG
GGCATCGGGGGGACTGCCGCGACGGTGTGCAGAGACTTTAATGACGAATAGTTAGACTTT
GCACTTGTAATTGGTAGGATTGATGACCCAGCCACTCTGGAAAGTATAACATGCCGAGAA
TCTTTTTCATTGATAGAGGATCTACACGTACAACATTTTGTTGTGTCCTCGGATGAAGGA
GGTGATTTCAGCCATTGAGAAAGGAGATCAAGGAACCAATAGGGCTATCGCAAGCGAAGT
TAGAATGTTAGAATCTTCGTTTCTTTGTAGTTTTATATTTAAAGATCGTGTTGTCAATTA
TGAGGCACATAGTTTAACTAAAATCCTGTCTTCTTTGGGTCTGGAACGACACGGTTGGTT
CGGTCTATCCCATGACCAAAATCGTATCCCACACTTTCTGGAATTTGCTGAATAAAGTCT
AGTTTTCGCCTGAAAAAAGTATAAAAATAAAAAGAGATGTGAACGAGTACAAGATGCAGA
AACATATACCCACCCTAAAGAAAATGCAAACGTACCGAGTCACGAGAAACGAAATCGAGG
CTGCACCAGCGCTAAACCCGTGCACCAGCCACCAGATCGTCCCAGAACATTCCTTCCCGT
AATCCTATCATTGACCGGAGAGTCCGCACTACTAGCAGCAGCACGGCAGAGAAAACGGCA
ACGGTAACGGACAGCGCGTCCGTTTCGGCCGCACGCGAACGTTCGGAAATTTCAAATACC
CCTCCGTGGGAGGCGAGGCGTACGTACGTACGTTACGGGGCGGACCCGGCCCCGCCCACG
GTCAACCCCTCCGGGCTCGGCTCGGGCCCACGTCTCCGGCCCCGCCTGTCATGGACGCGC
AGGCCCGGTGGGTGGAGGGGCCGACGGCGAGGGGCGCGCGTGGGGTCTTTAAAAAAGGGG
GTCGGGGCGGCACAGCGACTCCTCCTCCTCACCTTCCTTCCATTCGACTCCACTCCACTC
TCCCACCCCACCCTCACCCTCGCCTCGCCTTTTTAGAGAGAGAAACACGAGCTCCCCCAC
CGAGCCGGTAGAGAGAGAAACCCAGGTCCAGGCCGAGCTTTCGCCGTAGCGGAGGAGGAG
GAGATGGAGAGGCCGGCGCCGGTGAGGAAGTCCCACACCAACACGGCCGATCTGCTGGCG
TGGCCGGAGGGCGCGCAGCCGGAGCTCGTCGACGGGGCCACGCCGCCGCCCAACCGCCGC
CCGCACCAGGTGACGTCACGGGGGCGGAGGCGGACCCCCCTGCGAATTGCTGGGTCAGGG
GCTCGATTGTCTCGTCTCGTACGTAACCCTTTTTTCCCTCCTTTTCTGCGTGTGCAGCCG
TCGGAGGCGATCCACAAGGTGGTGTTCGGCGGGCAGGTCACGGAGGAGGAGGCCGAGAGC
CTCAACAAGAGGTGAGATCGGTGGCATCTGGCTGATACTAGTACTGGCGTGCTGGTTTCT
CCTGCAGGGGACGGACGATTTCGGGTTGTGTTTCCGTTTCGTTTGCAGATTTGGGCTTCG
GCGATTAGTAGATCTCTAGAGTTTCGTGCCTCCTCCTTCGGGAATCGTTAGTCTCCGGGA
CGCTTTCCTCGATCTGCGTATCTGGTGCATAGGGAAATACGCCTGATTTGAATTTCTGTT
TGGTTGGTGAGATATGTGCGCCGAGTTTTGGTGCTGTTCGATAGGCTTGTAGGGCCGCGT
GGTTTGTGCGCTCATGCGACGGTGGTTGCACCCAATACGCCATACAAACTTTGTTGATGT
GCTGTTGGGCGAGATTCTTTTTTTTTTTTTTTTGAATTTGAACTGATCGTTGTAGCTTTG
GTTTGTGCATATCATCTTAATTTGCTTTGTTCTGTAGATCTTAGGTAAAGAATCTTGTCA
CAAATGAGCACTGATTTGCTGAATTATACACGGTGCAGTGCACTAAATGAGCTGTTCATT
TATTTTCTCCCCTCAGGAAACAATGCTCCGCTCCCAAGTGGAAGGAGATGACAGGAAGTG
GCATATTTGCAGCTGGAGGTGAGGCTGAGGAAGATGAATCCGCTAACGCTTCTGCGACAC
CCGTCCGAACAGCTTCAAAGAATTATCAGGTGCTGCTTTCTGCGAAATCTTTTTTTCTTA
CAGAACAGATTTTTTTTTTGATTAATGCGCCCTCTTTCGATCTGCCATATTGCAAACTGA
ATTAGCTGTTATCCATTGCTAGTACTAAGGACCAGGTATTTTTATTTATTCACAGGCTGT
GCTGAATGATTGAGAGGGCACCACTTATTTAGTATCCCCCTGATTTGCTTACACATTTGA
TATTAGCTGCTGGTTGCTAGAATCAACCTTGTTAAATGTTCTAACCTCCAGAGTCAGAAG
TTGTTGGGATGAATCTTGTGGAAAGGGTCTGGCTATATATAGTTATTCATATGTGGTCGC
ATTGGTTGGTGACCTTTCCTTGTAAATTCTAATAGAACTGGACCTTGATTCAACTATTAA
ACTAGGCCTTTGTTTTCAATTGCTTTGTTTGGTAGACAGTGGGATTTAGGTAGTCAGGTA
TACTACTTTTTTTTTTCTTCCGTTCACAAGATACAGCATTACTGCTTTGGTGTAGTGCTT
CATGGCATTTCTTAAAAGTAGACCAACTGCTTCCATAATTGGGAGGACTATATACATATT
TAACTAGAGAAGCACTGTTAATTTAAAAAAACACTAGAGAAATACTGTTACTGCACTCAT
GTTTTTACCGGCAGTCTAAAAAACTGTAAAAATAGAAGACCATTTCACTCCATACAGACT
TCCTGACAGAGCTTAATCTGATTCTGTCAAACTACTACAGGCTATCAGTACCATAAGCCA
CATCTCCTTTGCTGAGGACGAAAGTGTTTCTCCCAAGAAGCCAACCTCCATAGCCGAGGT
GGCAAAGCAGCGTGAGCTAAGCGGCACGCTCCAGAGCGAGGATGACAGCAAGCTGAAGAA
GCAGGTATCCAATGCCAAATCAAAGGAGCTCAGCGGGCACGGCATCTTTTCTCCTCCGGA
GGACCCCAGGCCACGCAACTCGGAGAACGGCTCCACCTCGCAGACGCCAGGGAAGAACGC
ACAGGTTCGCATTTTCTCAACAAACACGTCTCCCTCCTAATCTGGACACTGGACGGTTTC
CCCAGCTCTGATCGGAGTGCTTATGCTTTCAATCGCTTTCGGCAGGTGAGCAGCATCAAA
TTCGGAGAGGCCGACGACTCCGACAGCATGGTTAAGACGGCGAAGAAGATCCCGACGAAG
AAGTTCAACGACCTGACTGGCAACAACATCTTCAAAGGCGACGCCGCGGAGGCCCCTGGC
ACGGCGGAGAAGCAGCTGAGCGACGCCAAGCTCAAGGAGATGAGCGGCAGCAACATCTTT
GCGGACGGCAAGGCGCCGTCCCGAGACTTCCTCGGTGGCATCCGCAAGCCCCCCGGTGGC
GAGAGCAGCATCGCGCTGGTCTAACAGCGACGACAACCCCTGATGGACAGGACAGAACAG
ACATAGCCTACAACATTCTTCGTTCACCCTTCGCCCCGTCGCCGTCTCTCGATCTAGGAG
TGATTTCTAGGGAGCTTTTTTTCTTCTTCGTCGTCGTTCGTTGGTGGGACTGATCTGCGA
TCTCGATTGAACTTCTGGTTTGGTTTTTTCCCGTTCCTTTTTCCTGGCGCCGGGTGCTTT
CCCTTTCCTTTACTCGCTGTTAATTAATCCTGATGGTGTGGTTAGTGGCTGCGGCAAGCA
AGCAACGATGATGGCTCGCTCGTTCGTTCGTTCGTTCGTGCGTCGTCTGGTCGCCTCTAA
GTTAACAACAATTGGTGTGCATTTTGCTGCGTTTGTGGTTGGGTTTGGTTGGTCGTGGCG
TACCTAATAATGTAACAACAACAACAACCTAGAGTGAGTGATGTTTCAGCTGCTGCAGGA
TCTTGGATTCTTTTTCCTTATTGCATGCTGCGTCTCGGATGCCCTATTGGTGTAGGTCCG
TTCCTGCGGCAGTGCCACCAAACTTCGTCCAACTACGACTTTCTGAGCGGCGCCAGCATC
TTTTCGGATTGTTCCTTGACCCCAGCTATCTCCCCTCTCTCGTCGAGTCTGAATTGCGCG
CACCCACGGGGGCCCTCGCCGGTCTCGCGACTGTTGCGCGCTCTTTGGATACGAACGAGT
TCGCGGTGCTGCTCTACAGTAGTAGCTAGCCTTTTCTTTTGGGACATGTGGATGAGAGTT
TGCACATGTGATGATGATGTGATTGATTAGCACGCAGGCACGCTTGGCATGGGATTGTGT
GCCGGCAAAAGCTTCGGCTGGCAATGATACCGTGACGTCAGTTGTGGGCATACGGGTATT
TCTCATAATGATGAATAGCTCCCCGATCACGACAAGTCCGCGGACATCCATGTGGAAGAC
GGCTAACCGTTTCCATTAAACGTTGGCTGACCAATTTGAATTTCAAATGCATAGTTAAAG
TGCGGTGTTCACGTAACACCCGATCACTTTTTTTTTTGGTGTTCATAGTTTTTACATGAC
CGATCATAAAAATATCTTAATCTGGCAGTCTGTCAAAAATGGATTTTTCTTTGACTTGTC
GTATTGGTTGTACGAGCCTCCACGCTTACTCTGTCATCTACTCCTCCTTCTCAGTCTCGC
CTTCTTCTCTGGCGTCTCGAACTAAGATGGACGGTTTGCATGAGCATCCTTGCATCATCG
TCCAACTCATCCATCTTCAAGATCAACATGAATACTTTGAAGCGACCGCAATCTCAACAT
TTTTCTTTTCGAGCGTGCTCTTCTTCTCTTCGAGATCGGTCATCGCATTTCAGCCTTTTT
TTCCTCCTCAACGTTGGAGTGCCTGACACATGTATCATCCTTCTTCACCAAGATGCCCTT
GAAACACTTCGTCATCTTCATCGCCGCCCCTTCTCCTCCCCACATTCTTTCCCCGGGAAC
TCCCTTCTAACCTTTTTGGACGGCTCTTTTGTTGGGTCAGTGGTATCACACACTTCCTTG
TTCGTACTAATGCTAGCACTCTTAACGGAGTTGGCAATGAATAAATTTTGTTTGGGTTGC
CCACTCAACTTCAACCAACAATGCATGAGGACGAAGTTCCTCTTCACAACCTTCAAGAAC
AAGTTGCACACATAAGAGTGCAATGAAAAACATTGTCAACAAGTTGCATATCCGGCGACA
TGACCAACACATGGAGCATAGGTGGCCAAAATTTGCATATCCGCCCAAATGACCAACACA
CAACATACTTGCTCGGTGATTTCTGCACCACTTGGCCAACGATCGATTAGTTGTTTCAAA
TGGCCGCAATAATTGCATACAACCTCTTGGATGGTGTACCATGATGGTTGAGCAACGTTA
TCCCATGGTTGCAGATGAGTTCTTTGTGGTAGGGCTCAAAATTTTCGTGCTCATGAAACC
AAGTATGAATGTTGGCCAAAAGTATTGCGCCATTTTGCTCCGTCGTGGATCAGATTCATG
CTAGTGGCCTGTCACAACCCTAGATTATTGCTTGTAAATAGTTGCATTGGCATTCATGTC
ATCATGTTTATTTTTCTTCTGAACTTGAAATGGGGATGATAAAACACTAGCACTATTTGA
AATTCAAATAGGTCCAACTAAAAATATTTTTGATGAACCCCAAATGCCCTTTAGAAATGT
CCACATTTTTGGAATAATGTGAAACAGTCAACAAAATTGGTTTCATATTATTCGGACACA
TTTTGGGCATTCAATTAAGACATATGTGTATTGGAATTGGGTATATAAATTTCTATAAAT
AATTTTATAGATCCAAAATTTCTAAAACTTTGTAAGTGGCTCTCGAAATATATTACCAGA
CTCCATAAATATTTTCAAAAGTTACAAAATTGGTTTGGTTTGAAAAACCAAACTCAAACA
ATTGCAAAACAATAGAAAACAAAAAACACACATCGCAAGAACACTAAGACATCTCTATAT
TCAGACTGCATCATCCTCTACATACACACTAGGAGGTGTTCTGTGCAATAACATACACAC
ATCAAATAAATGACATATAAATCATGATCCTCTTACTCATTTAACAACTCATGAAAGTGA
TATAAGGGGCAACGACAAACCGAAACATAACCGATATTATCACTAATACANNTCGAATAT
TATCATACAATATCACTAATAAAAATCCAGTTGACATCTCACGGTGCAGGCGGTGGCAAC
CCAA