Contig Data
morexGenes
Links



Map Locations of contig_2546630 (5093 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_2546630

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_36338 3 2296 bp MLOC_36338.1 Available Available LOC_Os03g11310.1, FRAME:-1, EVALUE:0.0, 13103.m01274 protein PPR repeat domain containing protein, putative, expressed





CDS Structure of MLOC_36338






Contig Sequence (5093 bp)

>contig_2546630 5093 assembly3_WGSMorex_rbca.fasta
TAGTTTTCATTAGGCAATAAGAACCGCAATTGTAATGAGAAGCAACCTACAAATATTTAC
AATCTGTAAATTAAAGAAAAGGAAAAAAATGCACTTGCTGACAAAAAAATTATTTTGTAG
CAGTTTGCAACTCACTGAAGACTTGGCAATAAAGATAGAGGGGCAAACCTTATTGACCCG
TGCCTTTATTTTATGTTTCCGTGGCAACGCACAGGTATTGTTCTAGTCTATATAAGTTCG
GAACAAAATCTACAGATACACTGATGTACATGTAAAAAAATTCAGAGTTGTCCAAAATAT
GAAAGCCAACAAAAGCACCCAGTTATGCGGAAATGCAATTCGGCTCCCGGAAGCATATGG
GCCCAAAAAAAGTTCGAAATGAAAAAAAAATCAAGACAAATTTTATTTGTGTATTTTGTC
ACATCCAAATGTTACCTGCGAATTTTGAGGCAAAAAGGTAAAACATTTTGGCTTGTGCAA
CAAAAACAAATTGAACACCAAAAGTTACCCTAAAATGACATCCTAAATTTGTTTTCTTGC
TGATGAAACACCCTGCTCCTTATCACACGAAAATTGTCATCCATGTTTGCGACACTAATA
CAATCATCTACAAAGAAAATTAGATTTTTTTCCAGAATATTTAATACTTTTTCCGTAGTA
CTGTTCACCCAGGAGCATATATATGCTCCCGCGAGCCAAAACATCGCTCCCGCGTATTAC
ATTTTCCGACTAAAGAGCACACACGGGGTTCGCTGTTTCGTTCACCCGAAATCACTGAGA
TAGTCAAGACAAGCATTTTTTTTCTTCAATAAAAAGCGCTTTATTGGTTAAAAGAATTAA
ATACTACATCCAGTTTCTACATAATTAAGATGCACAAAACCATAACCAAGTCTAAGTTTC
AAAAAAATAGAAAAAGGCGGAATAGAAGTAATCATGTGAAGATTATATAACGCCTAACAC
ATAAGAGGGTCAATCCAATAATCATGCTGCCGTCCCTATAGGATAAAAGTATCCCTTGCC
GTTGCCTCCAAGCGTGCAGAGAAGCATAGAGCACTATAACAAGAATTCGACTGGCCGATA
GACTGCAAGTGTTCGCTTGACCATACTCATCGCACTACAGAGAACTTAAAATACGCCAGC
ATAACCATTTCAGCTTTAACGTGTATCTTTACTCAAACAAGTTAAGAAAATGCTTGTTTA
AGTGTAGTGACAGTAGGTAGGTTACATACGTGATTGCATTGCACGTTCAGATCTGTACAG
CTACAACTAGTGCTTCTCATAAGTCAGGAGGGCTACTCTGCTGACGCGATGTGTTGCAGC
ATGAACGACCTTGTCTTGCCATCTGGTGTTAGCCCAATGCTCCGCATTTTTGTGTACACC
TTCCTGGCTAATCTGATCTTGCCACGCAAACAAAGCCCGTGTATGACCGTGTTGTAGACC
GAAGAATCAGGAGCGACCTCCTGCAATGTTCAGAACTATTCAGTTGGAGATGAATGGTGA
TTCTAAAGAACCAAAACCGTGGTCAAGTTTGACAAAATAAAAAATGCTAGTGCCAAATCT
CAAACGGTTAGCTTAGATGGTTACTGCTGATTTCCAGTAGGTATAGCCAAAATGTCATGC
CAAAACTTCATCAAGGTTTATTTCAACTGTAACTTACAACCATAAAATGTATCAGTTCTT
TTAGACTAGCAAATATGAATTCCAAAAAGTGAAGTAGAAAATAAAGACATGTGTGTCGAA
GTGAATTTCATTTGTGCAAAGAGTATAAGTCCACTTGGAGCAACAAATTCTAGAAAAATA
AGCACTCAGCACAGTTATGTGCATGAAGACTTCCTTTCATACTGCGGACAAAGGCTAAGA
TAATCAAAGCCTGGGCAAGAAGCTATTTGAGATTTTCATTGATCTTTTTTTCTCCATATG
ATCCATGAAATGGATTGGGTTCCACTATCATCGGATAACGAAACAAAGACCAGAAAGCGT
CCATAGCGCAAAAGAAAAAAGCAAGATCGAATTCATCCACACGCTCGGGTCCCAAACGAA
AGGCCCAACCACCGCATGCACCGCTAGCAGGAAGCTATTTAATATTTTCATTTAATCTTA
GTATTATAGAACACTAAAGCATGGAACAACCTTACTACAGCAGACTACAGACTTATATCT
CATCTTAATAGTGGAAGATTGCAACTATTCCATAATGCCAATGTAGCTTTGAAGAGAATC
AAAGCACCAAATGTTTAGACACTAGAACACTAGAAAAGTCCGTAGTAATGTATGGAAATT
CAAAATCATTATCAGCTAGCCTAACAGAAATAAAACAATAAGGAACAAAATAGTACCTCC
AGTATATCCTCTACTTCGTCCCAAAGAGATCCCCAAATACAAGCTCTTATGACAGATAAA
TGCGTGAATGTGTCTGGTGAGCACCTTTCATGAGTCATACGGTGGTACACTTTCAGAGCG
ACTTTTGGCTCACAAGCGATCTCACAAGCACGTATCACGTGATTGTAAGAGACTGCTGAA
ATTTGCAGTTCGCTTTTTTCCATCATCCACAACAATTGCAAAGCATGCTCCCATTGACCA
AGTCTTTCACAAGACATCAAAGCTATGTTGTAGAGATGAGTGTTTAAGACTGATGGATGC
TTGGATTTAATTCCTTGGAAAAGCTCGAGGGCGTCCCAGCATCGACCAGACCTATACAAT
GCTGACAGCAATGCGCTCCATGTATATTGATCAGGCTCAAGTCCTGAAGATGTTAGAAGA
TGGTACATCCTAAAGGCGAGCTCATCTTCACCAGCCTTCCCAAGTGAGTTGATAACCGAA
TTAAACACAATGATATTGGGCTTCATGCCAGCACTCAACATTCTCCTAAATGTGGCCAGC
GCAAACTCCCACCTCCCTTCTTTGGTGCACGAGGCAATGATGGCCTTCATTATATCTTCA
CTGGGATCAAGCCCATCGCAGAGCATTTCCTCATAAGCAGCAATAGCTAACTCAGACTGT
CCACATTGCACAAATGTGCTAACCAGCAAATCGTAAGTCATCAAGGTTCCACTTAAAGAG
TTCTCAGCTAGCCTTCCCCACAGTTTCTCCACTTGCCTCCAGTCTTTCGCTCTTCCACAT
GCAGATATCATAGTGTTGTAAACAATCACATCAAGGGTTTCCCTCGATTCGTTGCACTCC
TCAATCTCACTGAACATTTGCAAAGCAGAAATATAGCCTTCGGTCCTTGCAACAGCCTTG
AGTATCAAGGTGTATGTATGGCCGGTTGCCAATCCTTTCCCCTTCATGAATTCATACATC
TTCATCGCATCCACGGAGGAACCTCTGCGGACAAAACTAGCCAAAAGGGAGTTGCAGGCA
TGCGAGTTGGGCTGAAGGCCAGACGCCAGCATTGAATCAAACAGCTCTATGGCACTCCTG
ACCTTGTTGGTTTGGCTCAGCTTCATCAACCTTCTAGACAACAATTCCTCGTCCCTCTCT
TCCAGGAAGTGGAGCCTTGATCCCTCACGCTCGAATTTATCCACCGGCTCCGAAACTGAC
GCCGACGGCACGCTTCTCGCCCTCACAGGGTCCTTCTCCACGGCAGGCGGCCTCGCCGGA
CGCCGCCGGAGCCCGTGCCTCTGGTGGTAATCGAAACCAGCAGCGCCAGGCCGCTCATCT
TCCACGCCCCGAATCCCCAACCCGGCCTCCTCCTGGCCGGTGACATCAGATTCGAGGACG
CACGGAGCCGCTCTGCAAACACACGCCCCTCTCGCCATCACCACGCCTACACTTACCAGA
CGGGCGTCACCTCTGCTCCGGCCGCCGGTCCCTGGACGGATTCTCGTGCCCTGGCCGCCC
TTCACGCTACGCCGGGGCAGCTCCTGGCTGAAGGAACCGCGGCTTGTGCTGCAGCCGCTC
CAAACCGCAGCCATACCCGCGCCAAATGCAAATGGCAAATAGGGTACAGGGATTTCAATC
ACGAAACTCGAGGAGTGGACGGAGGAAGCCCGCCCACCGCATTGACGAACCTGCAGCCGG
AGGGGCTCGCAGCGCCGCCGCGCCGCGCCGCGAATGAACCCGCGCTCACGCGAGGGAAAA
GGGAGATAAAAGGTTTTGGTGTCGATGCGCGGGGCTGGGGCGGGATGGGTGGAGATGAGG
ATGCGGGAATGGAGGGGAATCAATCGAAGCAGAGGCCTCGCGTTCCCCGACAGGCGCAAC
AGAGAAGCTCGCGCCTCCGGTGTGCTCCGGTTCCAAATTGTAGCCGGAGGAGGCTGAGGA
GTGTGCCTTATCCCCTTTTCCCTTCTCTATCTTTGCCTCCCTCTCTCTCTTTACAGGGCC
CCAACGTTATATCCGTTTCTCATCAGATTTTTTGATATCCAAATATTGGACTTGAATTTG
AATTCTCCAAGAAAGATTTATAAGCACTATATTGTTATAAAAAGGAAAAGCACCAAGACA
TTATGATTTTTTCATAGTAGACATGACAGTGATTATATTAAACTCTGACCGAAGCTCACC
CCAAATGACTAGGGAAACAAGGTTGCCGATATGGTAGGGGGTCACAAGGTGCGGAGTTTC
TAGCCAATAAAAACATGATAACAATGAACAGATATAGGACCAATGGCAACAACTATTGAG
ACGGGAAAAAGGATGACTGTCAGATTATTATTCGTCTCTATGCTATCGAAAAAGTCATGG
TGGCTGATCGACGTCATCGTGAGTGTAGTATGAATTCATCTCAGTATCGAGTATTGGAGT
GTTGTAGTGCGTTTGACTATGGTCTCGTCCGCGGTCCATATCATGTAACCAAGCGTGTCG
ATAAATTCGTGCTCTTTCCAACATGACCTCGAAGGTCCTCAGAGATGTGGGATCTATGGT
TGAGCACCCATGAAGGCGGGTAGAAAAGAGGTTGTAGTGTTATTTGACGTGACCGAGGAA
GACTATTGACGCGATGAGGTGCGGTGGGAGGTTGACAGGACGTGGATGTCGCCTAGAGGA
GGGGTGAATATGCGCTTTAAAATAATTACAGTTTAGGCTTGAACAAATGCGTAATAAAAC
TAACGTTTAATTTGTCAAGCATAAAACATAAAACAAGAAACAATATGGCTATC