morexGenes - Barley RNA-seq Database

Contig contig_2546566

Source Contig contig_2546566

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

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Map Locations of contig_2546566 (5987 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location

Predicted Genes from contig_2546566

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_36304	3	2761 bp	MLOC_36304.1	Available	Available	LOC_Os04g31000.1, FRAME:-3, EVALUE:4e-92, 13104.m02951 protein methyltransferase domain containing protein, expressed

CDS Structure of MLOC_36304

Contig Sequence (5987 bp)

>contig_2546566 5987 assembly3_WGSMorex_rbca.fasta
GCGACTAGGAAGCCGCCGATGGCAGCGGCAAGGGGATGAGCGCGCGTGGAGCATACTCCC
TGTCACGGCGGTCCGGAGTCGTCCAGTGAGTCATGACTTATAAATTTTTTGGGCCGGCCC
ACGTCCGGGCGGCCTTTATTTTTCGTTTTCCTTTTCCATCTTCGTTTTTTCTACTTTAAA
TAATTGGAGAATACAAAAAAGATCTAAATAAATAAATGAGAATTTTGAAATAAAATGTTC
AACAATTCATAAATGTCTGTGGATTCAGAAAATGTTCGCTATTTTTAGAAAATATTCGCA
CATTCAAAAAAATCGCAATTTTGAAAACAAATATTCCAGAAGTCAAAAAACGTTCATGAT
TTTTGTAAAAGTTTGGATATTACAAAATATTAATGAAATTGAACAAAATTTTGCCAATTC
AAAAAATGTTCATGAATTGAAAAAAAAAATGTCCGTAACTTACAAAATAGTTTATTAATT
TATAAAATATTCACTTATTCAAAAAAAATCATGAATTTTAAAAATTGTTCGCCGATTCAA
GAAAAATGGTTTAAGAAATGTTCATGATTTAAAAGAAAATGTTTGCAAATAGTATAAAAT
GTTCATCATTTCAGAAAAATTCAAAAATCTGTAAAAATGTTCGCAAATTTAAAAAACAAC
CACGATTTTAAATATGTTCACCGATTCAAGAAAAATGGTTTAGGAAATATTCACAATTTA
AAAAAAATGTTTGCAAATAGTATAAAATGTTCTTCATTTCAGAAAAAAATCAAAAAATCT
GTAAAAAAGTTTGTGAATTTGAAAAACAACCACTATTTCAAATATATTCATGAGTTATTT
TTTTCATGATTTTCAAAAATTGTTCACGATTTCAGAAAAATGAGCCAATGACAGGAAACT
CTTTCGCCCGAATATATGATTTTCATGATTTTGCTGTATCTTGGTGATGCAGCAAAATAT
GGCCATGGCAATTGAAGATTATGATTTTTTTTCTCCCGTTGCAACGCACGGGCCGTGTTG
CTAGTAATAATAACGATGATATATCTTTTCCTAAATAGGGTAATGAGCAGAATAAACATA
TCAAAGTTATTTGGCATCAGCATAATATTTTTAAAATAAAATCAATTTTTCTATGGGCCA
ATGACAGGAAACTCTTTCGCCCGAATACATAATGCAATGTTTGACTTAGTTATTTGATTT
GATGTATTAATTATTTTCTGCACACGATAAAGGCCTACTTGTAGTAGAAAGTACTGACAG
AATTTAAAAAAGAAAGCATTGACACATACGGCATAGGGTCTGTCTCTTCAGGATATTCAG
GTTCTATATCCATAACAAGAGGAGATAAATCCTTCTGCGAATAGCAAAAATATTATGTTA
CAACCTGACATATAAAAATAGGAGCCTTTGGCAATCGCACAATAATGAGAAACATCACCT
TGATAACATCAATGTCAGCACTTGCATGTCTGCTATCAAGGAATACCTAGCACAGCACAA
ATATAAGCCATGAAAATGAAGCAACATATCCTAGATAGCAAAGAGATAAACACGCAGTCT
GCATACCATGATTAGACGAGCAGCCTTTGCACTTTCAACAACAAGCCACTGCCCTTCCTC
TGAAGCAAATAACCATTCCTGAGCTCGTGCCTGAAAGAAGGTATTTTCGTTAGCAATCAC
GAATGGACAGAAGTGATGAACTATTTGAGTACTTCTCTATTTTCTTGGGTACAATATTGA
AACATGCGGTGAACATCAAATAAAAGCTACTGTGGTTAAGCAAAGCCTAGTTGTTAAGAT
TAGTTGACCAACATGCCACTCTCACACAGATAAAAAAACATTTTTTTTTGCGGTGGAAAA
ACAGCGGCAGCCATGAATCAGAGACTTAATGAGAATGAGGAATAAACTATATTAAAAAAA
CATACTAGAGTGACAGAAATTTAATTGATTGAAATGGAATCGATGCCAGCACATTTATAG
GTTTCATTACAGAGATAAAGCAGGAAATGATGATAAAGAAATTAAAACATATTCAGCAAA
GCATTGCTGGGTGTGCATCTGTGGACTACAGGACTTCAACCAAGTTAAGAATATTAAAGA
TGGAAAATTCTTAATTCTCATTTACTCTCTCTGTAAAGAAATATAAGAGCGTTTAGCTCA
CTCTTATATTTCTTTACGGAGGGAGTACATGAAATTTTTTGGCATGAATAAGATCCTAAT
AATGCAGGGGTTAGTCCCATATAATTGTGAGGCCAATCCACTAAGTAAAGTTTGTCTCAG
TGATCTGTTCCCAGTCCTGATTGCTCATTGCTTAAGGTCTATTAAAACAATATAAGATTC
CTCATGTGAGGAGATAAATTGTAAAACTTACATCAAGAATGAACATTGAAGACCACACAA
AGTTCTCCATGCCACTAAACGAACTAACAACTCCTAAAAAAATTAACAGGGCTAGAATTT
TATAAATCAGTATCAGTTAGTTTGGTTTGAGGAATAGGACTGGAATGGACCATTCATCAA
ACCTAGCAACATACTTTGTTTGAGAAATGTAATGGGTTAGTCTGTCAACCACCTCGACCC
TCATAAGCACGGAGATAAAAGAAAAATGGGGGATGGGGTCTGCCCCCAAAATCATGGGTT
AATTGGTTGATGGACCAACACATCTAGCATAAGGGAGTCCCTCAAATCAAACAACATATA
CATAAGCATCTGTAGCTCCAACAAATAGCTGCATCCAGCAGATTCATGATTGCAGTATGA
TAAGAATGACAGCATTAATCTCATTCAAACACTGAATATGCATGTTTAGCCTGCTGACTT
ATCCACTTCCCAGGCTGGAAAAACTGTCCTCAAGATGGAACTTCGTTCGTCTACATAAAC
AATACTCTGTCCATTCCATAATGTAGTGCATATAGATTTTATGAGAAGTCAAACTCAGCA
GACTTTGACCAAGTGAAAACTATCTATATCTACAATACCAAACATAAACAATATTAAAAT
TCAATTCACAATGTATCCAATGATATGTGTTTGGTATTCTAATTGTAAATATTTTTCTCT
CTAAACATTGTCAAAGTTTGACTTAAAAAAATCTATATGCACCACATTATGCAATGGTGG
AATAACTTGCTTCAGTAGTCATTAGTTGCACTATTATTGTTATGCACTCTGTAACTCTTC
CAGAATCCTAACCTTATGTCGAACTGCACAAAGAAGCATTAGCTACATGTCCCCATTTCT
TCTCTCTTCTAAGCTTTCTCTTGGGATTTAAAGACCAATACACGATTACAGCATCCACAT
CACATCTACAATGAAATTTGAGTTTGTTGACATATTTCTACGACGATTTCTCATCTCCAG
CAATCGGAATTTACAGTGACAGTAGAGAGAGAAATAGAATGGTGTGGCATCGACATGTTA
ATCGTCCATGTATACTCTAGTTTGAGGCAACTTCGTGTATCGTGTGGACTCTAATTTGAG
GCTACTTTGTATGTACCACCATAGCACGTTTCCAGGCTATAATAAGAATATGGACACAAA
ACTAACACATCAATTAAGATCACATCGATAGTAAGATTGGCATAAAACGCATAGATTAAA
GGATTAAATAAGTAACAAAAAAAATAGCCCCAAAGTTGCAAACAGACCCACGTAAATTTT
GATCAAAAAAGTTTACATTTCTACTGTCTCTCAGTTTTGAAGGTTTATTGCAAGATAGTG
CTAAGGGATTCAGTTAAACAGTAATGGTAATAAAAATACTATAAGGGCACCGGTGCAAAT
TGACAGTATATAACAAACCTTAGGCACAATAAAAACTCCACAGTGGTATACAAATTTTTC
AGTTTGATTCTTGGCATCCATTAAAACAGCTTTGTAGCAAAACAGTGAGCTTCCTTGTTC
ACCGAGAATTAACTGCCTCCTTCGTCCTGGGACAATAACCTTTAGATCTCCAATAGCACC
CAGCTGAAGATCTCGCAACGAGAGAAGTATATCAACACCAGAATTGTGTGACTCCCGGAT
TTTGTTCTCATTTTGCAGAGCATGAATTACAGCATTTGCCTGTAGCACCAACATAGAACA
TCAAGTAAAATGTAAGTCCTGACAAGTACTTAATTATTTATATTTCATAATACTGACCCC
CTCCATTCGCATATAGATTTTTTGAAAAGTCAAACCTCACAAACTTTGACCAAGTTTTTG
GAGAAAAACATTTCATCTAGAATGCCAAGCATATATCATTAGATTCATTATAAGTAGTTT
CATATTCTATATATTTGGTATTGTAGATATAAATAGTTTTCCCTATAAACTTGGTCAAAG
TTTGACTTCTCAAAATATTTAGACGCACTGCATTATGGAACAGAGGGAGTATATCAGAAG
AACATAACAGTACCTGCTGCATGTTACAGTATTCAGCAGACTGGTCCACTAGTGATTTTA
TTGTGTGTACAACACCCATCTTCCCTTTTACCATGACCACCATGAAGGTCTGGAAGGCAG
ACTTGCTAGAGGGTTCACTAGCTATAGCTTGAATAGTCATATCCCATCCAAACCTGAACT
CAGACAAAAGTAGGTCTACAAGAGAGAAAGTAGAAAAAAGAGTCTGAACAAAGTGTTTCA
ATATTAACCGGTTGATTACATAGAAAGTGGTCCATCTGTACTTTATAATTGGTAATTTAC
AATTCATGGAACTTCGTGAAATTGGAGTGACAATATCTTCAGAAGTATCTATGTTGGCTG
CAGATACATCATACATTGTAATATATCCTAGATTTGCTGGTAAAGGCATTTTCAAAATCC
CATGACCTTTTTATTTGTACTAATACAGAGCTTAAACCCTATGGTCACTCACAGAATAAC
ACAGTAAAAGGAGTGTAAATGCCAAATTGGAACCATGTCAAATTCAAAATCACGCATACG
CATATGTCAAGTTAAAAGCCAAAAAAATAAAGAGTAGGTACAAGGTGGCAATTGTGAAAC
ATCCTGTTCTCGGTAAGTGATTGAAGTTCACCTAAAACATGGGATTCTGCTAGAGTAAAG
CACGCAAATTTCCCGCCTGACTTCAAAACCCTCTTGGCCTGCAAAAGGTGTTTGCTTAGT
CAGGCATGACATGAAGAAAATGATATTTCCATCAATCCTACTAGATTACAGCAAGTAAAT
GGGAGTAAATTTAAACGAACTCAAAACCGAAATACCTCGTCTAGATATTTCATCCCCAGT
TTTGTGCCAACCTCCGGCTCCATAAGAGCATCCAATCCTCCCTTATCAAGTATGAAATCA
AAAGAACCATCTGGAAACTGCGAATTTGGGATGTGAGGCGGTTTCCACGAGAATGTTTGT
TAAATAAAGCATAAGCCGACAAAATCCCTTACAAACGGCACGGGAAATGAGAAGAATAAA
GCAATTGGAATTTAATAAAAGTACAATTGGAAATAGCATTAGTGACTTCAGTTCACATGT
TAAGAGGAATCACAAATGTTGCCCAGCGGATGTAATACCAAGGTCATTCTGAATCTCAAC
AGGGTAAATATTTCCATTTTGTTTTTAGTTTAATCCGTCATGTTGCAAAACTTCAAACTA
AAACCATAAGTATCTTCTGGAAGCTATCTCAGAGAGACAACATATCAGTTCAGTTCCAAG
ACTATGCACTGACAACCCACGGATACTCTTCCATGGAACCTAAACCAACTGGTTCAATGG
GCATGAAATCTAATTCTAGTTATGGTACCGATGTTCATAACATAAAACAAAAGTGTATCC
ATTCTTCATTCAGTAACTAATATAGTATTCTATTACAACATCAAGTCCAATCGAGCATTA
AAAACTTTGATACTAGCTCCAGCACAATCAGTGTTCAGAGTGCAAACCTAGCAATTTTGA
ATGCCAGTAAACAAACTGAGCGCAGATGTTTCAACTATAAAAAAAGCTCACCCCGTGAGC
CCCCCCCCCCCCCCACCCCCCACACCACACACAAACAAAAACAACTA