morexGenes - Barley RNA-seq Database

Contig contig_2540743

Source Contig contig_2540743

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

morexGenes Home
BLAST Search
Keyword Search
Samples and Analysis

Links

James Hutton Institute Home
BioSS Home

Map Locations of contig_2540743 (240 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location	No map location	No map location

Predicted Genes from contig_2540743

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_36230	1	150 bp	MLOC_36230.1	Available	Available	LOC_Os06g06880.1, FRAME:-3, EVALUE:5e-12, 13106.m00712 protein Ser/Thr protein phosphatase family protein, putative, expressed

CDS Structure of MLOC_36230

Contig Sequence (240 bp)

>contig_2540743 240 assembly3_WGSMorex_rbca.fasta
GACTCCTGTTGGTAGCGTCAGAATGACTTGTTATAGTGTATGCATGCGGAGGTGAGTGGG
GGAGGTGCAGGGGCGGCGGATCTCCGGGTCGGAGAGCTGCAGGGGGCGCACCGTCCGCCC
GCCGCGCGCCTCCAGGAGCCGCCGGATCACGTCGTCGAGCGCCGCCGCGTCCATCGCCCG
CGTGGTATGTAGAGGGCGGGTAAGCCCTAACGTTTCGTATTCCAACTTATTCGTGTTGTT