morexGenes - Barley RNA-seq Database

Contig contig_251259

Source Contig contig_251259

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_251259 (1558 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location

Predicted Genes from contig_251259

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_35653	1	349 bp	MLOC_35653.1	Available	Available	LOC_Os05g34170.3, FRAME:+2, EVALUE:9e-66, 13105.m03548 protein tubulin/FtsZ domain containing protein, putative, expressed

CDS Structure of MLOC_35653

Contig Sequence (1558 bp)

>contig_251259 1558 assembly3_WGSMorex_rbca.fasta
GGAGAGGGAGGGGGAGAGGGAGATACCTCTCCGTGGTGTCCTCCCTATCCACTGTCATCT
GCAACAAGGCCCTCATGAGCTCCCTCGGCTTCACCTTTGGTGTGAGGTTTAACTATTTCT
TGATTCCCAGCTTCTTGATTCGTTATGTATGTGCTCGTGCTTGGTGCTCTGTGACTTTGC
TGGATCTATCTATCCATGTCCATTCGTGCTATGCTCTTCGGTTGTGCACGTGCACGGTTC
AGATTATTAACACCAGATGATGCTCANCTTATGTGGTAGCTTTGGCCAAGGAGTGCCAAT
TGAATTTGGTGTGTTTAATAGCTATTTATTGTGATTCTTCACAACATATTGTAGAAATCA
TCAGGAGACCATGAGTGTAAAATGATAAGAGTGACTAGTTTCCTGCAGCTAGCGTACTTA
CTGCGAAAGCTTCGATTATTTTTCGTAACGAACGAGGTTGTGTATCTATGGTTCAAAAAA
AGAAGAAGGTTGTGTAGCATGTCCTGGTTGCTTTCTGCTTCGGTAGCTTGATAGATGGGA
GTAGTATATTTGTTTGTTTGTGCTGCCTGGAGTGTATGTACATGTGATGTTCAAAAACTT
GTTAGCTTTGACTTTCATTTTTCTTTCTTATTTCTGAATGTTGCTTATTTCTTTGTGAAC
ATAATAGGATGAGCTTTTGCTGAAGAGTGAATGAGAACATGAGATGCCACATGCCAGTGA
GTTTATTAATACTAATATCCTATTGACATGGAATTGTGCTTTGCAGCTACCACCTTGACG
AGCTGGCATCTCCTGGTCAACGTCTACTACAACGAGGCCTCCTGCGGCCGCTTCGTGCCC
CGCGCCGTCCTCATGGACCTCGAGCCCGACAACATGGACTCCGTTCTCTCCGGCCCCTAC
GGCGGCATATTCCGCCCCGAAAACTTCGTCTCCGGCCAGTATGGTGATGGCAACAACTGG
GCCAAGGGACACTACACCGAGGGTGCCGAGCTCATTGACTCCGTCCTCGATGTTGTCTGC
AAGGAGGCCGAGAACCGCGACTGCCTCCAAGGTCTCTGATTTTTCCTCTTCTCCCTTTCC
CTATTTCTTCTCATGTTCCTCTGTTCCGTTCATCCGTCCTCCGCACCGGCGGCGTGGATC
TAGAGCATAGGAGAAATGGTGGCTGACGGATCTGTGCGGGTGTAGGTTTCCAGGTGTGCC
ACTCGCTGGGCGGCGGCACGGGGTCCAGCATGGGCGCGCTGCTCATCTCCAAGATCCGGG
AGGAGTACCCGGAGTGCATGATGCTCACCTTCTCTGTCTTCCCCTACTGCCGCCCGCAGC
CTCAGATACAAGATAGTTTGTTGTTTGTTATATTTTGTTTTACAAGTACTAATCATCTGC
ATAGCTCGCGACTGACAAGACGATGATACATTCGAGTGCATTTCCCTGTTTTGTTTCAGG
ATATGTTTTAGTAGGATTTTGCTTGTGTCACTAAGAGAAGCTCTTTTCTGCCTCGTGCAG
TAGCTCGGAGAGGAAGAAGAAAGAAGAGGAGATGCATGCTGGATGAATCTGGACCAAC