Contig Data
morexGenes
Links



Map Locations of contig_247086 (3406 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_247086

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_35288 1 231 bp MLOC_35288.1 Available Available LOC_Os02g56130.1, FRAME:-3, EVALUE:3e-39, 13102.m06448 protein PCNA - Putative DNA replicative polymerase clamp, expressed





CDS Structure of MLOC_35288






Contig Sequence (3406 bp)

>contig_247086 3406 assembly3_WGSMorex_rbca.fasta
GGCAAAATTACGACGAAATCAAAACGTCATGGGTGAAATGAGCCCAACCCATTTCAATTG
ATCACACGGGCTGGTTTTATTTTTTTTGGCTTTTTCTTATTGGTTTTTATTGGGGCCTTA
GCCTATTTACAGCCAATTCTAGTAAAAAAATCAATTTTTTTCATCATTATAATTTGGGCC
CTCGCCTTTCAGTGCCCAAATACATTTTGTCTAGTTCAATTTTGGCCTTTTTCATTTTGG
AATTCAGCAACTTTTTTCTTTTATGTTGTTAATGGATCTATAAATAACAGCCCATACAAC
TTTGAAGCCCATACACATATATCTGAAGCATCTCTAAATGACAGCCCACCACAAAATTTG
AAGCACATTTCAAGATCCAATAATATAGTCAAAACCTGTAACACAATCAAAATCTGTTAC
CAAACCAGTAGCACAATCTGGTACAGAATTACACAACCAAGTGCACAAAATCTGCTACCA
AACCNNGTGCTATCACAAAATCTGCTACCAAACCAAGTGCTATCACAGAATCTGTTATCA
AGTGCACAATAACTACTACCAAAATGGTTCCTAAAGTTGGTTCTTTCTTTGCCATTCTGC
GGATGGGACTTTTCTTGGGTTGTTTCATCTCCGCTTCAGCATCTTCACGATGATGCGCTG
GTGTGTAATTATCCAATGTACCCTTTGTCCTCCATCTTGTCCCACACGCGTTGCAGAGCA
CTAGCTTCTCCGGTGGCCCGTGTCACCAAAGAGGACTCCCCGTATCAGCAGCAGCAACAA
CAGTTTCCATGAGAAACAAGAAGTAGAGTACAAAACAGATAGTCAAGAATCTGTGTAATA
TTGTTGATTGGTAGTGGTCCATCGGGACAGGAGCTTGCACCACAAAGATTTAGAATTTTG
AGGAAGTAAGATCATCACATACATAGTCAAACTGTATACTTCTTTCAGGTATTGTTTGTT
TTCAACTGTTGTACAAGATGAGGCCTATCAAACTGCATACATAGTTGTTGCTGGGAGCAC
ATATTTCTTTTAGGTATAGTTCTTTCAGGTATTGTTTGTTTTGAACTACATACATAGTTC
CAGCCCATAACCATCCAATCAAAGCTACAATGTTGTGTGTTTGTAAAAAAAGGATTAATT
CACTACCCACACAATAAGCTAGCCCAAATGTCCAAGCAGGGAGACTAGCACAGGCCAGCT
TATAGCATGAAGCACATGAGGTTACTAATTGCAAACCATACATTCACATATCCTACTGTT
TAGGAGATGAACTTAACAGCAGAAAACCATGGCAATCAACAACCCTAGCTAATAATTAAA
ATTTGAACTGTATACTACCAGAGTGGATATGAACTGCTGCTACTGATATGTTAAGTACAA
GCACCATAAGTAGTTAAATATATAACATAGTCATCTATCAACCAATAGTATGGAGCAAAA
AGAAAAGAGGGAGAGTCGAGTTTATACCTGGGAGAACCTTCCATCCTTGTAGTCCTTCTT
ACTGTTGAGGAACCAGTCCGACACCTTTAACTGGCATTGTTCCACCTTCATTAGCCGATC
CATCTCCTCCGAAGAACACTCTACGGCCCTGAACCCTCACATGACACAACACACGAAGAG
GAGACTGCCATTTTAGTCTATGCAATGGAACAAACAGTAGGGTAGTGTGTGTCTATGAAC
TGCAAATAAGAAATTTTAGGCTAATTATCTTAAGTAAAGGACAGCATCAACATTATCTAC
CTAATCGTCCAAATATTATAATTGAGTAAGCACTAAACGATCTCTTTGAGAATTAGGTGT
GATTGTCTATTCCTATTGCTAAAATTAAGGTATTCATAAAATACAAGCATAACTGCAAAT
GAGATTCCAAACTCCTGTTACGCAATACACCCCAAAAATTTCACAATATAAATGCCTAGA
AGGACAATATATCCATAGTAACTAGTGGAAAAACAACACAAGAAAGATACCTTATCAACA
GTCTTGTTCTGGCTACAAACGATGTTTGCAGTCCCAATGTCTTCAGCAGTGGATATCTTG
ACACCCTCCTTGGTGACAGAGATAAAAATTGCAACGCACAGAACAAAAGCCGCCATCAGA
CAAGCGAGAAATAGAGATCACAAGCGCAGCAGAATAAAAATTAGACTATGATGGACATGA
GCATACCGGTGTCGCCGATGCCGCTGAGGTCCTTGCAGATCCTGGAGAACTCGGAGGACA
ACATGCAGACGATGGCGTAGTACTCCGAGTCGGGGATGCCGAGGTGATCTCTGTCGATGT
CCATGAGCTTAATCTCGAAGTCGGAAATCTTATCCTGATCTGTCCATCCATCCATCCATC
CATCCAGATCAGGGTCACCGACGTAACCACGAGGAGCAAAGGGGAGAAAACATATCGAGT
GGGGGTCGCTTGCTGGGCAACTCGAACATGAAGGTGGCGGTGTTGGAGCTGTCGTCGGCC
TTGATGGTGATGATGTCGTTGTTGCCGGCGCAGTGAAGCATCTTGGCCATGTTGCCGAGG
TTCATGCCCATGGAGAGGTTGGGGTCGCAGCGGTAGTGCTTGAAGCCCTCAGAGCGAGGA
GGGCGACGAGCGTGACGTTCAAAAAGTTGATGGGGGCGGGGTCGATGGGATCTGAGCTAG
AATTTGGGCTGCGGGTGTGGTTATCTTTTTCATTTTTTTCCTGTAGATACATGGATTAAT
GGATGTGAGATGGTGAGATAGATGGATGGATNNNTGGGCGCCATGTCATCGATCCGTGGA
AAGAGTTTAGATTGATTGAAAAATCAGTGATTTAAAATAGTTTCCAAGTACTAAAAATAG
AGAAATTTTTTGAAGCATCTATCAAAAATATTTTGCAAAAGGGCATCACACAAATTTTAC
TAGAGTTAGACCACATTTTATAGATGACGACTAATTTGTATGCATTTCTCATCTTTCTAG
CTATTTTTAGTCATATTTCGAGTGGCAAAATGGGTTTTTTTGTGAAGAACCTACCAAANN
NNNNNNNNAAAATTGGACTCCATCAATTTTCTAAAATACTAGTACATATTTAATATACAA
TTGACCAAATGGTTGGGTGCCAAAAGTTTGTATCCACCTCTCATGAAAAAGAAAACTTTC
TCTCGATTTAGTTGGTAGCAGGTCAAATTTGAACTGTAGCTGCCTCATGGCTTGCTATTT
ATTTTTTCAAAAAACATTTCTAGGTAAAAAAGTATCTATTTCTTCATAGATACTCCAAAA
TATTTGCAAAAATCAAGCCCTAACTGCGAACATCATACCCGCCGTTTGGACCGTATTGTG
AAATGGACATGAAAAATTCGAAAAAATCAAAAAATTCAAAAACCTTCGCATTGTGTCATC
ATATGTGACCAAGTTACCAGGTATAATAATAAACTTGTAATATGAC