morexGenes - Barley RNA-seq Database

Contig contig_246985

Source Contig contig_246985

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_246985 (1602 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location

Predicted Genes from contig_246985

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_35274	1	345 bp	MLOC_35274.1	Available	Available	LOC_Os09g12060.1, FRAME:-3, EVALUE:9e-15, 13109.m01088 protein hypothetical protein

CDS Structure of MLOC_35274

Contig Sequence (1602 bp)

>contig_246985 1602 assembly3_WGSMorex_rbca.fasta
TTGCTTTATTTTACATGACATAAGATTGACAGGGGGCTCAAAACGAGTGCTGGTAAAATG
CCAGTTTATGAGATGAATCACTTTCTGGCAGAACTAAGGGGCTCACACCGACTGCACTTT
CCTTCATTGGGTGCTTGTTGCCAGTGCAATGATCTCATAGCTGCAGGCTACGGAACAAAA
CAAAACAAAAAACAGTCAGTGTAACTGTCAAGTAGATCACCCATAATCAGATGCAACAAC
AGGTGCCACCACAATCTACAAGGACGATGAAATAAAGCACACATTTTGATATTTGTTCTA
TGCCGGAAAAGGTCAACTAAGTACTACATACTTCTGTAAACATATATAAGACATTTTAGG
TTGTCTTATACATGTTTACAGGGGGAATAGCACTCTGTGCTACACAAGATTACTGTTCAG
AGGTTGAGAGATTCAGTTCAAAACCTACTGCCTACTATAATGAAGAACATGTTTCTAAAC
TTCAAGGATTAAGTGAATTCTGCTGGTATGAAAAAGACAATTGTATTCAGACCTACTGCA
CACTTCAAGACAAAGCATGCCCTGAAAATTGGTGAGATGAATAAGTAACTTTCTTTTTCA
GATGGTCAGTTACTACGGCCATGCCGAGGCGGCTAATAGCAATACATCTCAAAGTTCCAT
ATCAATTGTTAGTTACAAGAATACATCGTCAAACCGAAACAAATAGATTTCAAGTTAACA
ATTATTTTCAAATGGCAACACAGCACTCAAGAAAATAATGATATACTGTAAAATACACTC
CATGGTTAGTAGAAGTAGTGAAGACAGAAAATAAGCTACAGTGTAATGAATAACAAAGGG
ATGGGTTGCCAAAATTCATATAGAAAAAAATAGCTACCATATAGAGTTGCCGACTTTACT
ACACTAGAACAAGATTAAACATGTGCAACAACACAGACTATATCCGTGGTGCTAGAAAAC
TAACCAATGCAGCATACTATCATTTGCCCTACATTATCGAACCCAACTACAAATTTAGTT
TAGAAAGTAGACAGATACTACCCACATCAACTAAATGCCTATATCACAAAGTGAAGACAC
AGCTAACATGATAACAGGCATATAACATTACATAGGTGGTCAACATCCAATTACAAACTG
GATCATTAATTATTGCACAATGCAATCCTTAAAGAGAGAAGCCTAATACACAAGAATAAG
AAGTGGTCTTAAATATCCAAAAGTATGACAACAAGGAAGTTATGTATGCAAGTTTTATCA
CGAAAATGTTTCTCTACACAGATGTAATATACCATCAACTATCACAGAATTATATAACAA
GGAAGTTATGTCTGCTACATGTCTTGAACATACCTCATGGGGACATTTGGCTCTGAAGCC
ACAAAACAGCAGTATCTTTATCATCATCAGCGGCATTGATGAAAATCTCACGGTTTGCAG
CATCCTTGAAGACGTTGAATGCTTTGATCTTCTCGATGTGGGTCACATCCTACATTTTTT
TCAACACATCCATGCACTTGGTGATAGAGAATTCATGTAATTTTGTTCCCTCTGCCTTTT
CATTGGCCAAGTATGTAGCTTCATCATCTACTTGCCTTTTCT