morexGenes - Barley RNA-seq Database

Contig contig_246164

Source Contig contig_246164

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_246164 (1707 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location

Predicted Genes from contig_246164

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_35176	2	1448 bp	MLOC_35176.1	Available	Available	LOC_Os08g06600.1, FRAME:-1, EVALUE:3e-80, 13108.m00674 protein nuf2 family protein, expressed

CDS Structure of MLOC_35176

Contig Sequence (1707 bp)

>contig_246164 1707 assembly3_WGSMorex_rbca.fasta
GGACTCAAGAGTAAATGACTGATATATTAAAGAATGTGCACATAGTTTACTTTGCATATG
GTAAATTGTAGATAGCCTGTCCTGTGTGGGGCTGTGGGCTGGAGCATTTCTAATCTATGA
AGTCAAGATGGAGCGGGAGATGTGTTAGGGCCAATAGCTCCTGGTCTAATAAAATCTATG
GCCCTGTAATTAAATATAGTACTACCCTGTAATTAAATATAGTACTACTTAATGTTACAA
TTTATAACCAATAGCAGATAATGCACCTTGTTGTGATTAAGGCTCATACTTTTCAAGCTA
CTTTAAACTCCTATTTAGTTTGATATGGCAGATCTCCTGATTTCAGGTTTCAAACAGGAT
CCTATGAGAGCTCCGGATTTATTGACATCAAAACCAGCTCGAGATTTATCTAGGAAATAC
TTGGAGGCAAGGTTTTTGACCAATTAGCTCTAGCTTTGTCTAGAAGACCAGGATCGACGC
CACGCCAAAAGGCACAAGGCTGAATAGATTGCACCACAACCACACAAGGCTGTTTATATT
CGACCTGATGTGGCAACATGTGATGTATTTTGATCAGAAACTCCTAGACCATGTAGCATG
CTTGGCTCTTAGGGACTATACTTTATTTGCAACTCATGATGCCAAAAATCCACTGAAAAT
AATTAGTTTTTTGGATAGAGAGCGACACTACAGAAGACACAAGGTAGGAATCAGCACACC
TTCCTGTGGATCTCCTCTTTCTTGTCATTGATGGCTGCGGCTTTTGCTCGCAGGGTCAGT
TGCTGCTTGTTGTAAACCTGAACTTTCTGCTGCAGAGCATTGACATCCGCTTCCAGCTGC
TGGGCCATGGGCTCCTCCATTTGCACCGCAAGCTCATGATCCGTAATCTCTTTCTGAAGC
TGCACGGAGAAACATAAACGCAACTCTAAGAATTTCCTGTCAGCCTGTGGGCATTTCCAC
AAACACATTAGCTGCGGAAACTGTGAACAGCAAAGACCTGGGCTATCCTGGCCTTGAGCT
CCAGAGTGCGCTCGTGGTAGTCGGGGGTCTCGCTGACGATGGGCTGCAAGAGGGTGACCT
TCTCCTCCCTGTACAAGAGGAAGTTGACGAGGGCGCTGAGGACCACGACGACGCGGTCCG
GAGTGGGGCGGGTGAAGTCGGCAAGCGTGAAGTCCTTGAACTTGATGGAGTCGAGGAAGG
CCTGCGACTTGATGTAGAGGTGCAGCGCTCGGATGGCCTCCGCATGGTGCTCTGGGTTGT
CCAGCACCTCCAAGTCGCTGAACCTTAGCAGCCCGTCCTCACCGTCCCTGTGAAATCTAG
CCTGGTGAGCGAGCGAGGGAGGGGGGGAGAGGGGGCATGCTTCTTTTGTTACCCGGGGGC
ATCGACGAAGGAGTCAAAGAAGCGGGCGAGGACGCCAGGGAGCAGGTCGGGCTGCGGGTT
GGCGATGTTCTCGGGGCGGAGGTTCGCGACGGGGGCGATCCCGTACTGGGACAGCTGCTC
CGCGATCACCACCGGCGACAGTATTGGGAACACGAAGCCGGACTCCATCATGGTGCCGAC
GGTCCTACTACTCCTCTGGATAGTAGATAAAACCATAGCTAAATTAGCACTTAAGGGATA
ATAAATCCACTAAAACAGTGACGAGAAGTACAAATGTTGGCATCACATACCATCAGCACA
ACCCAAAACCCAAGAAATTGCCATGGT