| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
 |
No map location | No map location |
Predicted Genes from contig_245923
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_35154 |
1 |
1536 bp |
MLOC_35154.1 |
Available |
Available |
LOC_Os10g07310.1, FRAME:+2, EVALUE:3e-57, 13110.m00649 protein retrotransposon protein, putative, unclassified |
| MLOC_35155 |
1 |
682 bp |
MLOC_35155.1 |
Available |
Available |
LOC_Os12g34510.1, FRAME:+1, EVALUE:6e-51, 13112.m03522 protein Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed |
CDS Structure of MLOC_35154
CDS Structure of MLOC_35155
Contig Sequence (5015 bp)
>contig_245923 5015 assembly3_WGSMorex_rbca.fasta
CCATGCGACGTTCCCCAACATCTTATGCACATGGTGCACCCCGTCGAGATGGGCTGTCCT
TCTTGTTTTATCAGGCTTTTTGGGAAGTTATTAAGTCTGATTTTATGGCGTTTATTAGAG
ATTTTGAAAATGGTGTTCTAGTCCTTCATAGACTAAATTTTGCTATAATTGTGTTGATTC
CTAAACAATTTGATGCTAGCGATATGAAGAAATGCAGGCCTATCAGCTTGAGTAACTGTG
GGGTTAAGATCTTATCTAAAGCTATGACTGATAGGGTTTCCCCTATTGGACATAGGCTAA
TTTCTACTAATCAAAGGAACTTTATTAAAGGTAGGTACATTTTAGAAATTGTGGTTATGG
CTCATGAGGTTAAAAAATCCGGTAGCCCAGGTTTGGTGTTTAAATTGGATTATGAAAAAG
CTTATGACAGGGTTAGTTGGGACTTCCTGTTTGGAATGCTCAAATCAAGGGGTTTTGGCC
CTAGATGGATCTCTTGGGTTAAATCTATGTTAATCAATAGCACCTTTAGTGTGAAAATTA
ATGATGAAATAGGCCCCCACTTTGTGGGGGGGAAAGGGCTTAAACAAGGGGACCCTTCGT
CCCCCCTTTTTTTCACTTAGTGGCAGATGTTTTCACGAAAATGCTTCAAAAAGCAGTAGA
TCAGAATTTGATTGGGGGGCTTCTTGCTCATGTCATCCCCAGAGGCGTTGTCAGTCTGCA
GTATGCAAATGCCATCATCCTCTTCTTGAAAGATTCAGTTGATAAAACCAGGAATTTTAA
GTGGCTATTATCCAATTTTGTGAACCTTTCTGGCATGAAAATCAATTTCAGTAAAAGTGA
CTTGATGACTATTAATTTTGAGGAGGGTGCTGCCAAAAAATTTGCCCAGATTTTTTGTTG
TAAGTTAGTCTCTTTTCCTATCAAATATTTGGGGGTGCCTTTGCACTATGATAGGATGAA
AAGAGAAGACTTACAAGCGTTGGTTGATAGGATCATTAAATGATTGTCGGGTTTGATGGG
ATATATCTCACCTATAGAGGTAAACGTATCCTTCTATGTGCTTGTATTATTAGTATCCCT
CGTATCTTATGGCCATGCTAAAATTTCTCAAATGGGTTGTTAATGCCATTAATTCGCAAA
TGGCTCATTTCTTTTGGGGGAACATGGGGGGTCAACACAAGTATCACCTTGCTAATTGGG
GTTTGGTTTCTAGGAAGAAATAATTTGGTGGCCTAGGTATTCCCAATATTAAGGAATTTA
ACATGGCCTTGTTATCCTCGTGGGGGAAATGTTTCTACGATGGCTCTTATAAAGACTGGA
AAAGGATTGTTTCTTATAAATATAAGGTGGATGATCCAAATAATTTTTGGGCTAAGGGGG
AGACTGGTTATCCCTTTTGGAAGAATATTACCTAGGCTTTTGTTGCTTCTAAAAACTTCT
ACAAATGGAAACTAGGGAATGAGGAATTGATCAGTTTCTGGTATGACACTCTGGTATGAC
ACTTGGGTTGGGGAATGTTCCCTTAAAGTGCAATTTTGGGACCTATTTATAATTTGCAAC
CAACAAGATAGCTCAGTTGCACAGATCTGGGACGGGGCTAACCTTAAATTGACTTTTAGA
AGATGTGTTGACCACTATGGGATGGTTTTGTGGCAACAACTAGTTACGCTAGTGAATAAG
TTCCCTCTTCTTGAGGAGGCTGATTTTCCTATTTGGACTCTAGAACCAAATGGTATATAC
TCAGTCAAATCTATGTATGCTGCCAATATTATTATTAACTTTGGGGGGGGGGTAGTATCA
GCCATCGGTGATAAACTTTGGAGGGTGGCTTGTCCACGGAAGATTCATATTTTTGTGTGG
CTATGTGTGTACAATAAGGTACTTACGCGAGACAACCTAGCAAAACAGAGGCCACTAGAA
AATCCATCTTGCTTGTTTTGTGGAGAAGAGGAAACTACCCAACAATCTGCTTTTTGATTG
TGTGGTTTCCCAGCAAATCCTGATGTTTTTGGCAAAATTCAGTCCGAGCCAAGGATATCA
TATAGCGTAGACGCAAGATGATTCGTCGCACGCTAACTTATTTTCCTCTCAGGCTAGCGA
TTACTGGAATATGGGAGCTTGGGTGGCTGATAAAAGCCTGTTGAATACACAACAAAAGTA
CCAAGATCCGAAGAGGCGGAGTAAGAACGGAGAACATGGTGAGGCGGGAAGCGCTAGCTC
ATCGCCGACCTCCTTAGGGGAAGAACGATGGCAGCAACGAAAATCTATGGATAGAACTGT
CATAGGATGACAACACCCCGGGCAGTTCGAGCGCTTCCTGATGCGATTTTCTTGTCTGAG
TCACATCTTGCAAAAGCTAAGGTGGGAAAACTGATGTGAAAGTTGAAATTTGATGACATG
CTGATTCATAAGAGCGATGGAAGAAGCAGCGGTCTTTTGTTGATGTGGAGAAAAGAAATA
AAGATTGTAGCAAAATTATATTAGGCACAACTTTATAGATGTGTTAATAAATGATGGGAC
AGAATGGCGGTTTATAAGATTTTACGCTGAACCAAGCTGGGAGAACAAGTACAATTGGCA
GCGGAAAAGACTGTTAATCGTTGAACCAGTGGCGGAGCTAGCTCCCGGTGACCTGGGACA
GCTGCCCGGGCTGCTCCAGCCATTCTTCACTAAATAATACAAAGATACCATGATTAATAT
TACTAATCACTTGGGCAAACGCTGGGCAACGTTGCTGTGTAAAGACTTTGCCCCGGCTCC
TTGGGCTGGTTGGCTCCGCCACTGCGTTGAACCGTAACATTGTTGATCGTCGACTTATGG
CATCATTTGACAGCGGGAAAGATCAATTTTAAAAAATTGGTGTCTACGAGTCAAAAAAAC
TGAAGGCACAACCGAAAACTTATTTATCTCCAGGACGAAAAAAACGCTGACACAACATAA
AAAAGTCTTTCGTCGGGGTGCACTGAATCATTACGGCTGGAGATTTTCTGAGTCCGAATG
TACATGTTGTTGAAAATTCCCGCCAAATCGCCGGCCCGCGCCAAACCCACGCCAAAGTTT
TTGCCTCCGCCCACCACGTCACCGATCCGCGGAAAAAACAATTGTTTTTTTTGCCTCTCC
CTCCACGTCACCGATCCGCGGCCTCGCCGTCCCAGCGAATCACGCGCGGCTCCCCTTCTC
TTTATAACGCGCCACCGCCCCCCTCTGCCACACCATATCAAGTACCCAGCGCCCTCCAAC
CTCACACAGATCCCGGCCATCTCCTCTGTTCCAGCGACAACCGCACCAGCGGCTCCATCC
TCCACCTCGACCCGAAGATGGCCATCGCCGGCAGCGGGAGGGGTAAGGCGAAGCCCGCCG
CCAGCGCCAAGTCCGTGTCCCGGTCGTCCAAGGCCGGCCTGCAGTTCCCCGTCGGCCGCG
TCGCCAGGTACCTCAAGGTCGGCAAGTACGCGGAGCGCGTCGGCGCCGGAGCCCCCGTCT
ACCTCGCCGCCGTCCTCGAGTACCTCGCCGCCGAGGTACGCATCCTCCGCCGGCTCCTCC
TCCTCTCCCCGTCTATCTCTTAACTCTGTTCACCTCCCTTGCGCGCGGTTCCTCTGTCCT
GGATCTCACCGTGTCTTGTTTCTCTCCGATTCAGACTCTGGAGCTCGCCGGCAACGCGGC
GCGGGACAACAAGAAGAACCGGATCGTGCCGCGCCACATCCAGCTGGCCGTGCGCAACGA
CGAGGAGCTGAGCCGGCTGCTGGGCTCCGTCACCATCGCCGCCGGCGGGGTGCTGCCCAG
CATCCACACCACGCTCCTCCCCAAGAAGGCCGGCAAGGCCAAGGGCGACATCGGCTCTGC
CTCCCAGGAGTTCTAGATTAGATTAGTGTTCTTGTTAATGTTTTGGTTTGCTGTGTAATC
GATGTTGGTGGTGGATCTGGTTGGAATGGATTGCATCTTGCAATCTTGTTCTCGTTGTTA
CTTGCTGTGATTTCTGAATGCTAATCTGCGTGATACCGTGGTTCTTGCAATGTTGATATC
TCTGGAATTACTCGCAAGAAAGGAAAAAGAATCTCCTCTCTGAAATCGTAGTTTGACCAT
GGCGTCTGTTTTAGTCTGAATCCAGTTCGAACTTCAGAATCCATAGACTGACGGCAAGGA
ACGCTGCAGTTTCACAGGCCACGCTGAGCCGGAAAAATCAAACGTGGATTATATATCTTG
CATTTTATTCTCTATCCAATTCTGCAGCAAAATCATTGCTACAACTGAAATTCGTTTTTT
CAGATGAAGGTCATGTTGCGATTGACCGAGCACCTGACAGGCAGCAACCAACAAGGCTTC
TTCTTAGAAGTGTCTAAGATTTTAAGTGCAAACCTTATAATTTATTTATCTGCACGTGTC
AACATATTAACAACTTAATTCAAACAGTCTGACATAACTATTTTGTGTGTGAAAATTCTG
ACACAGTAATCAACAATTCTGACACAACAGGCCACACAGTAATCAATAGCTTAATTCAAA
CAGTCTGACACAACATATTAACAAGGCGTTGGTCTGGCTGGACAGTGGCCTTGATATCTT
CTTGTCCGCAATCAACAATGAGAAGCTCGTTTCAGCAAAAAAGCGACATGCGACGCGCCA
TTGACCCGTACGAGAGGATGAAGATGTCGAATCACAAGCTTGGTTGTAATTTTTCCATTT
TTCAGAGATTTTTGTACCACTGGTTCGGTTAAATAAATGTTTACATATCCCAAAGAGGAC
GTTTGCATATTTGCTGCAAAAAAGGAAAACAAATGAAAGTGAATAAAAGGGACGCGTGTC
ACAAAAATGAGAAACAGTATAGTCAGTGGGTGTAGAAAAGTACTTCTGGCTACACGTGTT
GCTATTAACTTCATCAACTAGTAGCCGCGGATGTTTTTTCTTTTTTGCTACAAATATGAG
TCTGCGTCTTGATGAAACCGGACTGGGATCCAGTGACTTGTCTCTAGCAAGTCACGTTGT
AACTGCCCTCTTCTAATCTGCCGTTCAAACAACAT
