morexGenes - Barley RNA-seq Database

Contig contig_245777

Source Contig contig_245777

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_245777 (2531 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012

Predicted Genes from contig_245777

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_35138	6	2015 bp	MLOC_35138.3	Available	Available	LOC_Os08g07950.1, FRAME:-2, EVALUE:5e-44, 13108.m00818 protein NB-ARC domain containing protein, expressed
MLOC_35137	2	1098 bp	AK371305	Available	Available	None

CDS Structure of MLOC_35138

CDS Structure of MLOC_35137

Contig Sequence (2531 bp)

>contig_245777 2531 assembly3_WGSMorex_rbca.fasta
GCTACTCATAAAATTATCAAGATAAACGTGAGTGTCGTGGACGACATTTTCGTATGAAGA
CGGAATGATTCCAGGATGGAGTATTGTTGTGCTGTTAGTGGACTCGAGTGGACAGCCGCG
GCGCCCTCGTCGCCTGCTGTACGAGCACGTCCCCTGCCTCCGCGTCGCCACCACATCGAC
GCGCAGATCACCGCGCGCGCTCGCCTCCCATGCCCCCCGCGAGCGCGCTCTCCGACGGCG
AGGAGCTCGACCTCTTCATGTTGAGCTGCAGCTATTATGAGACGCCCTTCCTTCACGCCG
CCTCGGCTACCTGGGCTTCTGCCAAATCTTATCCTACAGAATCTCGACGTCGCAGCCGGA
GGTAACTGCCCTTGAGTGGTTGGGGGTAGATGGGCACGGACGAGCACCTCCGCGACGACG
ATGCCATCGCGGTGCTCCTCTCCTCCGGCTTCGAGGCCGACAAGGTCGACGCGCTTGACC
TCCTCCTCGTGCAGGGCGTCGACGTCGCGACTTCTCTTCCCACAGGTTCAGTTCCTCTCG
TCCTGTAGCGCCGTGGAAACTCGAACTGATTTTTGCGTGCGTTCAGTAGCAGAGTTTGTG
CTCTTAATTAAATGTGTAGCAGATTTAATTGCCGCAGGTTTGCTGCACTAAGGCTTGCTT
CTATATTATTATATATACATCGATTGAGAATTCGAGATACACTTTTGGTCTATACTGATG
CTACGTGATGCGAATGGTTTCTAACAGATTCACACTTTTGGTCTATACTGATGCTACGTG
ATGCGAATGGTTTCTAACAGATTCATGAGAAGTGTCAGGTTCTGATGTTCTATGTTTCAC
TACATTTGGGTAATGTGCACAGCACTCCACACACAAGATCTGCTCCATCAACCAGCACCA
TACTCTGCCTCGAACGGTAAACTCTACTGAATTTTCTTTCTAAGCCAAGTCAACATTTAA
ATCTTCTTTTGGTTCATAAGATAGGAATATCATTGGAGCAGAAAACTTTTATGAAATGAA
ATGCCATATATCACAAATCCCATGAACATGAATTATAAAATAGATGTCTTTTGATTCACA
TACTAGGAATTTTTCCATTAAATCTAGGGTATTATTTATTTTCCTATGAAAGCAGAGGAT
ATCCATAGTAATAGGATTATATTGCTACGAATCAAAGTGCAGTAAAGATTTTTTTCTATA
GAAATCTTATCCTACAGAATTTGTCGCAGACACACTACGTGCTCCTCCTCTGTTCCTTCA
AGGAACAGCTCCAGCAGGATGTGCGCATCCACGCCATGGAAGCGGTGATGGCTTGCTGGG
AGCTCGAGCAGACTTTACAGAGCCTTAAAGGTAGGAACAGAGCATCTTAAGTTCATCCGT
TCAACAGCAAGATATGTGCTTCTTAAGTTCTCTAGGAAGAGAATTTTGTAATATGTACTT
GTTAACTGATAGTCATAGTGACTATCGTGCTACTTATAGTGGGGGACACCATCTTCTGGA
ATCTTTAGCCACAACTCAAAAATTTAAAAGGAAGTGCTTTATCTATTCTACTCGAGTGTA
TAAATATTGCATAGTGTCATTTAGAGGGAGGGTAGTCATTCAACATTTAGTTCACCAGAT
TGGGACAACTTTTCTTCTTTCTTTACTTTGTCAGTGTGCCGTATTTGTCAGTATTATTTC
TTCAGTGTGGTATCCACATCCAAGGCAAAGAACCGCTCTTGCAATATACGATCTTCATCA
ACAAATCTGAGAATCAATGCCATCTGCTCTCTATTTGCTACATCACATGTCTCGTCCAGT
AGAATAGAAAACTTAGAATCCCCGATCTCTTCACGAATATGTTTCCTAACTTTCAATGCA
TAAATACCCAAAATCTCTTGTTGGATGTCATGTGATGTGTACTTTGAACTGTATGGAGCA
TTCTCCAAAATAACTTCAGCAATCTCAGGGTTGAATTCTGCAAGGAGCTTTAACAATTCA
ATAAAGTTCCCTCTGTTCTTTGACTCTGGAGTTTCATCATGGTCTCTAAATGCACAAGAT
TGTGTTGTAAGCCACTTAACAGCTGCAATTGATTTGTTCACCCTCATCCTGTTTCTTTCT
ATTTCCTCTGGTTTCGCACTGCTACAACATTTTCTAAATGGCCTTGCTGATTCAAGAAGT
CATGCCATGATTTGGTTGCATTATTATGTTCAGAGCAAGGTTCAGAACCTATGTGGTTTA
AGAAAGCACATTTCTTTCCATCATGAACCCTTTTCCAGTTTACAAATCCTCGCACTGTGA
AAACATCTGAACCACCTCTCTTGTTTTTGTTTTTGCCAAACAAGAAACAATAGAAGCAAT
ATGCCTACGTCGACTCCCTCAAGCTCGCCGGAAACGGCAAGGAGGTCTGGGTCTTCGACA
TCGACAAGACCACCCTCTTCAGCCTCCCCTACTACGCCAAGCACGGCTTCGGGTACGTAC
TTACACTCTTGTATACATTACATACACACTCTAGTGCATTAGACTTCCGATCGAGCAGGG
ACTTGCACTCA