morexGenes - Barley RNA-seq Database

Contig contig_245560
Source Contig contig_245560
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_245560 (8398 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location	No map location
Predicted Genes from contig_245560

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_35083	1	1823 bp	None	Available	Available	None
MLOC_35082	4	3604 bp	MLOC_35082.1	Available	Available	LOC_Os09g33960.1, FRAME:+1, EVALUE:6e-115, 13109.m03400 protein expressed protein
CDS Structure of MLOC_35083

CDS Structure of MLOC_35082

Contig Sequence (8398 bp)

>contig_245560 8398 assembly3_WGSMorex_rbca.fasta
TGGGGTTCACGGCGGGAGGGGGACGGTAGCATCATGTGTTTCGTGGTTCCGAGGTTTTCA
CCTTCCTTCAGGGGAACGCAATGTGCGCTCGAATTTCAGGCGCAAGTGCTCGCTTATTTG
AACCCTATTGTAAGCTGGGCTGTTGGTGCTCTCGGATTGAGACGCGTGCTCTACTACTCG
CTTGCGTGTTGTTGTCGTGCTTGGGCATGCCAATTCTTCGAAATTCCGATGAATAGTTAC
TGTTTGTATAACTTGTGGTCTTTGCCTGATGTCAAAGTGTACTAACACTGTTGTGTCTTC
TGTGCGCTGCTACAGTCAACCTGATGGGGTGGGAGAAAAACGAGAAACATCTCCTCAGCC
TTTCTCTCCAAAGCCTCCAATCTTTGTGCAAGGAGTATAACCTTCCTGCAAACAAGACCC
ACCCTCAGTTAGCTCGCTCGCTGGCCATTCATCTAGAGGTGAGTTTCAGTATACACCATC
TGTTTCAACTTTGACTACATGTATATGTATTTTGAGGCCAAGATGTTACCTAGTGTTATT
GTCAGTTGTTTTCTTGCTTTCCAAGGGTGAAATAGATTGTCTACTGATGTGCACCATCTT
TCTTTTTCCAGAATGAAAAAAATAATTCAGGACCGGAAAAGGAAAATTTGACTGGTCCTA
CTTCTTCACAGGCTTCTCCTGCTACCTCTCCTGCGATGTTACCAAATACCAAAGAAGCAT
CCAAATGTATGTATAGAAACTTTCTTCTTAGTTTGGCAGATGCCAATGTTTACTCTATGG
TTAATACTGGTGGACACACTCAGGGACATGTTTTCTTTCCTCAAACGACACTAAATGATA
TGTGGATGTTAGTATATCTGACAAGAACTAATTGATTGCAGGTGAGCAAGATAACCACAA
AAGAGGCCCATGTAGTGGCAGAGATGATGACGATGTTAGGCCACCATTAAAGCATAAAAA
AGTGACTAGAAAACAAGCAGATAGAAAAGTGAAAAGTGTAAGTAATTGTTACCTTTGTCT
ATTTTATCTTGTTATAATACATCATTTTCTCTGATTCAACCTAATATTTGTCCTCGCAAT
GGAATGCAATACAACTAGGCTTCCGATTGTGTAACTGAGTACTGGATGCATGCTTTTTAA
CTTTTTATAATCTAGGCACTTTCATACTTTAGTATAAATCAACTTCAGTTGTTCAAATTC
AACATATTGATAATCTAGGCATTTCTTGGCATGTGCTGTGCAAACTGAATTTTATCTAGT
CAAACCCTACTATTCAATTTTTTTTTTATCAGCTCCGTTTCCATGGCCAAGAGAAATGTG
CGGGTCAGATTATTTGCTTTTCCTGTGTAACGAATAGAGTCATATATTTCCCAGTCCTCT
TCACTTGATACCTGAAACTATTTCTGTGCCTTAGATGAGATTGCCTTGAATCAGATTTTT
ATATTTCGTCGGTTTCCTTGGACATTTAGTGCTAGTTGGCCCATTCCTGTATAAGATAGG
ATGAATCTTCTCACTCATGAAAATGTGAAATATAGATAACAAATTGTGCTTGGATTTGAA
TTCAAGCACTGGATTGTTACTTCAATAGTGCATCTGTAGTGGTGTTTTGTCCAGTACGCT
GGAAATCTAGGACCACGATATTTTTATATGAAACCTATCTTCTGCAGCATACTTTTTTTA
ACACACGACACTCTTTTGGATTTACCATCACCGTTTATGTTAGTTGATTTCGTCTTGTGT
TTAAGATGGTGTTTCCCTGTGATCTGTGTACTCATAATTCCTGTCACAGCTTTCGTTTGT
ATACAGTGCATATGCATTTCTTCATTTGTTTCGGTATCTTGAACCAGGACTCTGGTACCA
GAACGAGCCTGCCTCCGGCTTCTAGTAACAATGGAAAAGGAGATTGCTTTAATTCATGTT
CTGGACAAGGGATTGCTCATAATGTGAAATCTCAAACTGCTGATGGTATTGCAACGTGCT
CAACAGCCCCAAAGCTTAATGGAAATCACGCTTCAGCTGCTCCTGTAAATGACACAATTT
CTTTCATAGCAAGTCATCCTGGTCCTAGTGGTGTGGCGTCAAAGCCTCCCAGAGATATGA
AAGCTGGTACAAATGGCATAGATAAGGGCAGTGGCTTGTCTAATGAGAACTCGGCAAATG
CAAACTCTCCTTTTCAACTTTTTTTGATGGATGATGAGGGAATCGATCTATTTGTTGATC
TTAATTCCACTCCTGGAGATTGGGTTGGTAGCTTGAAGGGCGGAGTGAACCTACTTCCAA
ACACACATAACTCTGAAGCTGATATGTTCACCAACTCTATTAGCAGCCTCCGGAATAAGA
ATGGTCAGAACGCAATGTCACCATCAGATAATATCATTGTGGACATAAAAAATAAGGGAC
CTGAGAGCATTGCTGCTTGCACCAATTCATCACTAGGTTCAACTGGTGGTGAGAATTCTC
GCTCCAAATTCAATCCACGTGATACAACTGTTGTAAACTCGAGGTCATCTGCATCCACAT
TGCCTGGTACTCATGTTGAAATTTCTGTATCTCAAGAGGGACCTCCGGTGGTACATTCTT
CATGTTTAACATCTGATGTTCAGAATAACGTGTCACTTGATATGATGGCTGGTGCTTTGG
ATAGCAATGTGCTTCCTCAAGAATCTGTTGATGTCTCCATGTTGTCTGGAAGAAGCCATG
CACCGTTGGTTGATGGTTCCATGCAACCAACTAATGAAGGCACGTTTAGTCCTGGTAAAA
CCAAAGCTTGTGTCAAGAATGGCTGCACTCAGAATGTTTTGGATGGTCATACTGACAAAG
CCGTGTCATCTTACCCAGGGCATGTGGCTATAACCAACACTGATAGAAACTCTCGTCCAC
CATCTGTGGGCAATCAGGAAATGTTAGATGTTACTTCAGGGGTTCAGCGTACCCGCAAGA
GTGATACAAATGGACTCCTAAAGGAAAATGTACCAATCGGAGCAGTGGCGATGGAAGAAG
ATAATGGTCATGGTGGCAGCTTGTCAGTTCGTCAACTAGCCAATCAGGCGGTAATTGCAC
TGCCTGCCACAAATGCCCAGTCAGATGCTAGTTCTGCAGATCGCGTTGCTGGAAACTTCG
ACCTCACAGACCCAACAAGATCATCTGTTGCTTCGGTAATTTTGTTGTACTTTGATGCTA
GCTAGAAAATTAACTGTGCCTAATACTACCACCATTCCTAAATATAAGACGTTAAACTGC
CCCAGTGTTTTATATTTAGGAATGGAGGTAGTACCAAATATGGAAATATGCATGATGTAT
TGATGATTGTGATCATGGGTTTTAAGGTGGTAAGGCGATTACCAACCGCTCTGATGCCTA
AGCGCCTAAGGCAGATGCCTAACTGCCTAAAGCGGGCATAATTGCAAGGCGCTGCCAGGG
CGCCTTGCCGCCTAAGCGTCCAAGGCATGATGCCTTATACACAATGATTGTGATATGTGT
GTCTTAATTACTCATGTCCTATCTTATTGCTTAATTTTACATTCCAGGTTTTCTGGAATC
TTGAATTTTTTGATAATTTAATTAATAAAAAAATCAATCTTACAAGATATATGACCTCAT
GATATTGAACTTTCCAAAATAAGGATCTAAAGGTCCTTCTCAGCCTACAAACGATCTACA
TAAATATTTTTTAACTGATTATTTTAGTAGGAGCATCTACTACTGTTTTTGGTCAATTTG
TTTTTCCAAAATGAGTGGTCCCAAAAACACTTCAGTTAAGTTTATTTTCAGGAAAAAATA
TTGACAAACTAGGAAATCCATATTTAATGACCTTCTGACATGCATGATACATTGTCCCTA
TCTTCTCTGAGCTTGGATCCTTTTTCTCTATCTTTATGTTTAACTTTCCTTTGTGTACAA
ACACAGAATTTGCCTATATGGCTGGGCAAGCAAGCACTTCATTGAATTGCCGTGTCCTCT
TGAGTTAAATCATGTTTTTCCTGCATCATTTTGTTTGGGAAACATAACTCAAGAACTCTC
TTTTCATTTTCTAGCTGAGAGGTAGTATTAACCTTCCGCCGTGCTGCTTTGATAACTGTA
ATTGTTGCTAGACCACACAATCCACACACTGTTCACATCAACGTTGGGCCTTTTCACCGA
GCATATTGGTAATATCCCCACATGCGCATGCATATGACCGGCATGTAAATCAAGAAGCCT
ATACATATTATGTTTTCTCTGCCTGCATCAATGTCGATCTTTGCTGTAAAAGAACCTAAA
ACTCTAAACACTGCTCATTTTCTAATTGAAAAGGTCGTATTAACTTTTTGCCATGCCACT
CCAATCTTGAAGATGGTCCTCAACTTTGACATACTGGATAAATTTTATGACAAGAACCTT
GTCAAATTCCTTGTAGTAGTGGGCGGATGCAAAAGCGACATCGCTTAGGCACATCATGTG
AACACCCATCGCTTAGGCACATCATGCAAGTTCACCACATCCATCATGGGCTTAGTGGAC
CAACATGTTTATGAACCCACTTAGAGGGATCTTGCTGCCATCTTAATCTTGCCAGTCTCC
ATGACCATCAGATGTTATCCCTTATTGGTACTGTAGACAAGTTCCATGCAAACTTGCATG
GCCCCCAACCACCTTTTGTGGGGTTTGTATTCGATATGTAAACTCTTGAGTTGTCAATTC
ATCACATTCAAAAAACTTTAATATTTTCTCATACAAAATGAAGTATTGATGCAAAAGAAA
TCCAATAGGACCTGAGAATAGTAACATAATATTGACATTCTTGTGCCAACCTGCCAATCG
TAAATAACTTTCTAATTTGATCAAGGAAACTTTCTAGCCAGAATACCAATATTAATGACC
TTCTGACATTACCAGGAATGACCTGGTCTTGTAGCGAAGATTATTCATTCTTTTTGGGTT
TTTCTATATGGCCAAGTAAGCACTCCTATGAGGTGTTGTGTTTCTGTGGTCGAGCTGAAT
CATCTAAGGCCTACTAGTGATACAACTTCCCTGCACAAATTTTCCTATTCATTTGTTAAA
ATGAATTGGTCTCTACACCCCCTTTTCAAACTACTTTCAAGATGGCGTCTTCTATTTGTA
GTCATCCATGCAACGGTTTCAACTAGTCAGTGTCAACTCTCACTAAACTAGTGTGCATGG
CTGACTTATTTTACTGGTTTATACTTTGTAGTAAAAGGGGAAGAAAGAAGGAAAGCTTGC
CTGTATCATTCTGGTCTAACTGTGGCCAACTCTACATGCCCAAATCTTAGCTCTGCAACT
GCAAACCCATCTATTTGGTAATTGATATTTGGGTAACCTCATTAACTGGCATCTTTGGTA
TTCACTACCACTGCCTTCATATTACCATGGCTTTTTCTACAGGAATTAGCGAATGATCAC
TTAAAAGAAATCATATAATGTGTTGTAAAATCATTTTCGTTTACTATGTTTTCTTTGAAA
TTCATTTCCATTTGTGTGATTAGCATACAAAGTTATTAGTAGTACCTCTGTGTGCCCGTG
TGTCTGGAAACTGCTTCATTGCTTGCTTTCATTTGTCATTTTTTCGGTTGATTTATGTTG
TTTTATCCTCTTGTGCAGGACAATGCTGTTACTCCCCTGGCTACGAATCATGGTGCAAAG
TATGTTCTGTGTAAACATAGTAGCACCTCTGTTTTTGAAGTAGTTCCTTACTTACACAAC
TCTTCTATTTTGCAGGACAGGTAATAGTCATGATTCTGCAGGCAAAGAAATACCGTGTGA
TCCTGAGGAGTTGCAGGGTGTGCCTACAAGAAATATACTATTTAGGTTAAGAAGTGCTGC
TGCTAAGCAGACCAAGCCCTCTACAGTACCCAGACGGTCATCAAGGCTTGCCCCAAAGGT
TAGCACAGTAGTGGTCACTGTTATTGAATTTGGTACTCAATACCACAACCTGATAGTGAT
TACTGATTAGCGAAAGAGCTGTTAATCATCGATACCATATCACAACCTGGTAGTAAAATT
GCCATGATCGTGCAAAAGCTAACAGATTGAGCACAGTATGTTTTAGAGGGCCCTGCAGTT
ATATTTTGACTGCCTTTTGCTCCTTCATTTTTGTGTGTTTGAAAATCAATACACTGACTT
GATTTACTTTGTCCATGTGCAGTGATTGCTAATGACAGGGTTGAGATCCACCACCAAGAA
TGATGCATAGCTTAACTGCCGCCGTAGTCGATTCCCAACAGGGAATACCTTCCTAGCCTC
CAACCTCCACAGTTCTTGTCGATTCGTCTTGCTACCAACTGAGTAGTCTTTTTGCATACT
TCTGTCAACAGCTCAATGCCACCAAATGCTTTTTGTCGTTCTTCTCCGTTATACAGCATC
TGCTATACTTCACACAGTGCCGAGCTCTGCATACACCAACCATTGTACAAACATATCAGG
ATTATTAGGAAATTTTTGAACCTGCAGTATGTCACCTTGTTTTCCAGATGGGCAATAGAT
GTCGTCGTACTGTACTGTAATACTGTATATGGCTGGTTGTGATTTGTGTGCTGTGATAGG
ATTGCTATCCATGCAGGATCCAGCTCGCTGCTTATATATTTTCTGTATTGCCTGCCATCT
GTGGCAGTGTTCCCCGCCTTGCCAGATTGATGTTGCAAGGTTTGGTTGGTGAAAACTGTA
ACTGAATATATTTCTTCCCATCTTGATGCCGGAGATCTGCCTGGGAGGTGATGCCTCTGC
AATTTCTGAGCCTGAGCATGTTTTGTTTTGTTCAGTTGCTTCCCTGGTACAAACCCCATG
CTTCTGAACAACGGGATATGAGGCAGCGTAGAATTATGTGTGATGCAAACTTCTCTGCTG
GTAAAGACAGCCAAGGCTCTGATGCCATGCCAGCGTGCTCGGCAGAGCATGAATGATCTC
ACGTAGCTCGATGCGCTAATCTAATCATAGTTTGTTTGACTTTCTGTAAACCCCATTTTC
CTTTTGAAATATTTTTGTTGCCGGTTAAAGGTGCCGACGAAATCAAAAAGCGAACAAGGA
ATACATACCTGATGAACAAGATGTCCTCCCACTCGGCATATTTTGTCTCCCGGGGGATGA
CAATCTGGTTGTGTCCTTCCCGTCAAAAAGATAAAATAAAACCTGGCTATGTCCTTTTGT
CTCCCAGGGGATGACAATCTGGTTGTGTCCTTCCCGTCAAAAAAATAAAATAAAACCTGG
CTATGTCCTTCACTTGGCGCATATCGTCCCTGGCGATGACGATCTCTTCATGTTCTCTCA
CTCTCATTTTTCGTCTTTCGGAGATGATAACTGCTCCTACAAACTTTAGATGAAGTTAGG
GTTTAACTTTGAATGGTGGGTGGTGGTAATGGTGGTGGATCTTTTGCGGAGATGGGAGTG
GAGCTTGGTTAGGGTTTAACTTTGAATGGTGGGTGGTGGTAATGGTGGTGGATCTTGTGC
GGAGATGGGAGTGGAGCTTGGAAGGCGTTAGGAGGTGGTGGACAGAGGGGAGACAAGGTG
TAGGGTTATATATGGCCGAAAAAGGGGTTTTTCGGCTTGGTATAACAAAGCAATCAACCG
ATACAGCTAACGATAGGTGCTGGGGCAGACATTACAATCATGCCCAAAAAATTGACAAAA
GAAAAATAAAAGAAAGAATGCGAGCAGCACCTGATCAACGAAAGTTGTAGTGTCCCGTAA
CTGTTGTGTCCACCGGATAATTCCACCACACTTCAGTGCCATCGAATTGCCGCGTGCCAA
GGACACCTTCAAGAAGGACTGCAATGACGACGACGCTGCTGCCTGGACAAGTCCTAGGAT
TTCTCCCGGCACACGGAGGGGAGTGGGGGAGAGGTACATCTAACGCCCTTCAGGAAGGGA
GGGGGCGCCCGCAGGCGTCACCGCACCGGTGTGGCCGGATCAGAGAGAGATTTCTCCCGA
CCCCTCACACCCACCACCTGGAACCAATTCTTAGCTCAACCATGCCAATCACCCACCAAC
ATGCGCCACCACAGTCACGAGGACAATACCGTCGTCTCACCAAAGAAAACGCAGCGAGGC
CGCTGGACTGAGACACAACCACCGTGGACTGGGACCGGCAATACCACAATCGCGTGGGAG
GGGAAACCTCCACCGGCTCAAGCGGTAGCAAACCGGACGCAGGAGCAAGGGCATGCCGGA
CCGACTGTCTACCCGAGTCCAGATCGGGCCCGTTAAGCCCCCGCCGTCGCGCTGCAGCAG
ACGTAGCACAGGAGCCGCCGCCCCCATCTCCCTTATCGCGCCAGACCAGCCGGAGACGAC
CCGCCGGAGACCGAACCGGCCCACCCCGCCCTAGATCTAAGACCCAAGGGCCAAATCTTG
GCCCGCAAGACGCTGCACGCCAAGCCCACACAGCAGGCGCCAAGGAGCAACACTGCGC