morexGenes - Barley RNA-seq Database

Contig contig_245198
Source Contig contig_245198
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_245198 (6300 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_245198

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_34992	2	4401 bp	MLOC_34992.1	Available	Available	LOC_Os09g35860.1, FRAME:-3, EVALUE:2e-109, 13109.m03518 protein ras-related protein, putative, expressed
CDS Structure of MLOC_34992

Contig Sequence (6300 bp)

>contig_245198 6300 assembly3_WGSMorex_rbca.fasta
CAAACAATAAAATTAGCCAAGTATTAGAAACAATGATATTTGTGGATGTGCTCTCTGTCC
GCTCTTGGTCTAGTGGGAGGGCAGTGTCATCTTCTAGCCGACCCGTGTTCGAATCTCAGT
GGGCGGAATTAACCACTCTGGTTTATTCACTGCTAGAATTCAGTCTCTGGCAGCCTCTTC
TTAATTAAATGCCACCAGGCTCTTCCCTACTCTCTGCTACGGTCTCCGTCTCTCTTGGAA
GACCGTAGCACAGTATATGTTCAATCGGATTGGATGGCAATCCAATGATAGGTTACGTAT
CGAGTCATGTAATCCTGTTATCGGTCAGTTATGTTTTGGACTTGTTTATCTTTTGTATAC
TGTTGCTATTGTTACAAGAACTATTTTTATAAAGATGGTTGTGTGCATCATATGATGCAG
AGGCCGGGAGTTAAACCTCCTTTTCGAAAAAAAATATAAGCTCTTCCCCTACCGGTCGTC
TTTCGTAAGTGTTTGAAAAAAAAAACTATTCAGGAACGGATGCTGACAGCATTCTCTCCT
AAAAAATCTGCAAATTATTTTGTGTATAAAAATGTACCAAATTCAGTATCGCGCATGTGC
TTACATTGAGCATATTCAGTCAGGCTAAGACCAGACACAGTTTTCAATCCATACCGTACT
GCACATCCATATGCAGCAAAGTTGAGGGGGCTAGTACTTGTTGAGTGGTAGTTAATCACA
GTTGCTAGTTTATGCTTTGTTCCCCCATTTCTGGATTGCTCTAATTTCTTGATGTGTTTG
ACCATTGGGATTTAGAATTTTTTTTCCAGGCTGGTAAATCACGTAGTTGAGAACCAGCAG
TATTAAGTTCTTGCATCTGCAATGCTATGAGCTTATAATTTAATAATCGATGCAAATTCA
TGATGGCAGCTGGAGAATTGTCATTCAGCTTTTCCATTCCCGTAGTTTGAAAAGCCAGAT
CATTTTCTAGTTCTTGAATTGCAACTTTCAGAAGAAAACAGCGTCTTTTTTAGAAGTATG
CGTCGTTCTGCGTAGACAATTACTCATAGATAAACTTGTGAGCACAGATGTTCAACTCGT
CGATTATGCTTTGACTCTGGCAGGTCTCTGATAGCGGCATACCTGCTGGTCCTAAACGGC
TACAAGAACGTGTTCCATCTGGATGGAGGGCTCTACACATGGTTCAAGGCAGACCTGCCT
TCTGAAGGAGAGGAAGATTGAGCAGGAAAGTACCTGTCAGTTATTAGTTGCTACTCCTAC
GCCATTGTCGTTGTTCATACAACTGCAGTTTGCAATGAGTTGTACTTGTAATGATGCGCG
TTACGGATGAAATTGTCCGCACTAGTTTTGAGAAAAAATTCATATCCTTGACATCCAACT
TTTTGCCGGTCGCTAGATTTCTCTCGGATGTCGAACCTAGGCTCACTGTTGTTTGATTTG
AGCTGCTGTTTTCTGCGAAATTCATGCGAATCCCATGCACCCCTAACAAAGTAACAAGCC
CTGTCAGTGAGCAAATGCATTGGGAAAAAAAGAAGTTCTTATAAATCTCAGTCCCAGAGT
CTCACGGATGAAGAGGCAGATGCATCCAACCATTTCTTATCACAATCACAATGTATGTAC
AGCAAAAACAAATGCTTTACATGTCTAAACTTCTTCTGTTATCGAGAAATCGCATGGTGT
AATGTAATATGGTGTGAACGAAAGCTACGTGCCGATCACGAGCAGGAGCACTGCGAGGAG
GCGGTCTTCTTCATGGCGCTGGTCTCCATGATGGGGTCGTGGAGGTCCACCGTGGTGCCC
CTCAGCGACAGCGCCTGGCCGCGGTCGCCGTCGCCGTCGCCGTTGCGCGTCCGGCGGGCC
TCGTCGAGCTCCAGCGCCCGGCGGGAGACGACGGCGAAGACCTCCTCGAGGAGCGCGAGG
AAGGCGCGCTCCACGTTGTCGCCCGTGAGCGCCGACGCCTCGGAGAAGAAGAGCCCCTGC
TCCTCCGCGAACCGCGCGGCCTCGTCGGCGGGCACCTCGCGGCGGTGCGCCGGCGCGTCG
GCCTTGTTGCCGACGAGCGCCACGACGGTGGAGCCGTCGGCGTGGGCGCGGAGCTCCTCC
ACCCAGCGGGGCACGTGGTCGAAGGTGGCGCGCCGGGTCACGTCGTACACCACCATGGCG
CCCAGCGCGCCCCGGTAGTAGGCGCTCGTCACCGCCCGGTACCTGATCCCCACACGCGCG
CATGCACAACCGTCAGTTACACACACGCACACACTGCTTTTCTGTAAGGAAACCAGTCAA
ACATTTCATCATATTGCAACTTATCAACGTGCTAGAATTTGTCAATAAAATTCCTTTGGC
CCCACCCATATCAGGGTTTGTTTGGAAACAGTCTAACATTCTTTGGTTTGGACAAGTCCG
CTATTGACTATTGAAACCCTGCACTTTGCTCCCGGTTCAGTTTTGACCCTTGAACACACA
AGCCGTCCTAAAAGAATTTTAGAATTAAGCACGGTACTGTTCATGCTTTCTTGTTTTCCG
CAAATGTGGTGTTTTTCTTTTCCAGAAAATAGAAGCTTTCGTGTGGCTGCCACATCGATA
AACAGATTCTACCTTTGACGACCAATTAATAAAAGTATACTTTGATTAGTTCGATATATC
AATAATATTGTATTTGTCAGAGATAATAAACAGTTTTATTCTTTCAAAATAATACTAATA
AACAGTTTTGCAGTCTGATATTTCTACAACTTTACTTAAGCATTAGTGGAAAATGTAATA
CCAGGGTTGTGTGTGAGAGTATCACCATATGAACAAACATCATCTGTTTTAAACTATATA
GAATAATATGTAGAGAAATGGTACTCTAGTCATAGGCACAAATAAGCTTTTAGAGTCTTA
AAAAACTAAAAAAAATCACCACTAGCGTCCACATCATAAAATGATTTTTTGCAGCACAAG
TTTTGGTACTCATTCCTGATTTATGCACGGGTCCCAAAACAGGTGATAATCTGGGCGCAA
ATCGGGGCACGTATGTATGATCACCCCACTACGCCGATGGTCTTATTCCTAGAAACCAGG
AAAAGGCACAGTAGAATTTTCTTTTCCTTTGCAGAAGAGATCGCTTTCAGAGGTCGGCGT
GCTCTAGTGGTCTGAAGAATCGTCCTTATTAGCGGCATCAGCAGCAGGATCGCCGGCCAT
GTGGCCGTCGCATTTCGATGCAGCCGTAGCTTTCGCCTTCCCCGGAAAAACGAAAGCTGC
CCGCCACTCAGCATTTCCATCTTATCGCCTGGGTGCTGTGCTGATCCATTTGGTGATTAA
ATGCGTGTGATGGGAGATGAGGCTGACCGAAGTCGTGCGTCGACTGAATCCCCTAATCCG
GAGGCAAGAAGTCCCAAAAAATTCTTGGCCGTATATATGCAGTTACCATTAACTAACCAT
GTGGGGATCGTTAATCAATTAAGCAAGCTTTTGTGCTTAATAGTTAATTAGCGAAACAAC
AGGCCCAATCTCGTGTGTACGTAAACTAAGCTTTGGAAAGAAGCAAGCGTATGTATGTAT
GCATGTATGCAGCTAACTTTAGGTGGCAGGCAACAACAACAACAAGAGACTGTGGTGTAG
GTAGGGTGTCGGGTACGGGCAGCTGAGACGACATGACCAGCACGCCACGTACGTACGTGT
GCGTGTGTTCAAAGTTGAAACAACGTGAGCCGGCCGCCCAGAATTTCATGTCCGAGGAAC
GAGGATCGCATGCTGCAGCCGCGAGCAAGCAGCTCGGCGACCGGGCCGGGCCGGGCTGGA
GGAGGAAGACGAGGCAGCAGGATATATATGGGGGGCGTACCTCTCCTGTCCGGCGGTGTC
CCAGATCTGCGCCTTGACGCGCTTGCGGTGGAGGGTGAGGGTGCGGGTCTGGAACTCGAC
GCCGATGGTGGACTTGGAGTCGAGGAAGAACTCGTCCTTGGCGAACCGCCCCAGCAGCTG
CGTCTTGCCCACCGCCGAGTCGCCCACCACCACCACCTTGAACACGTAGTCGATCTCGCC
CTCTTTCTCCCCCTCCCACCCGGCGGCGGCCTCCTCCTCCTTCCCCCGCGACACCATGGC
TCCCCCCTCCTCCTCTCTATGATTCAGCGACTGAAGGAACCTTCTTCTTCTTGATCCTGG
CTCCCCCTCCTGTGCCTGTGTTGGTCACCTGTTATCCTTTGATGGATGGATCGATGGTCT
CTTGTAGATTGATTCTTGATGTGATGTGCGCACTGTGTGAGGGAAAAGGTGTCCCTATAA
ATCCCAATCAAAATATCTATCTATCTATCTATCCGGTATGCTTGGCTTGGCCGGCAGAGG
TGGCTGCTGTGCTGCTAGATAGCTAGGATGTGGTGCTGGTGCTGGTGTGGCATGCAAGAA
GAGGAGGAGGAGGAGGAGGACAGGGCATGGCATGGCATGCAGTACTGCTTTTGATGAGGC
TTACTGCTTCCTACTCTAGTGCACCAGCAGCCTTTGCCCGTTGTGTTCCGCGCGTGTCCT
GCTTTTGGAGGGAAGGGGGTATCTCTGCCTGCGCGAAGCAAAAGTTGGGCCACCCTGCCG
CGTTCTTCTCTTATATATTTATTTTTCGAAAATAAATATTTGTATCAATTACGTCTGTTT
TTCCTTTTGAATTTGACTAACAAAAGGGCCCGTGCGTTGCACCGGGTGTAAAAAAATAAA
TATAGACTTAGACGCCTGAAATAATACCACTAAAAAACACATTGCAATGGGCTCGTGCGT
TGCGCCGGGTGTAAATAGCTTCAGATATATTTCACTTAGCTAGAAAAATAATAGGAAACT
AAAAATAAAATTAAAGCGATGGTCATGGCTGACTGTCAATTAGTGTTAGTGTTGTACAAC
CAACAAACGAGAAAACTTGCTACTTAAACTGCTTCTTGGAAATAACCAACAACTTACTAA
GAAGAGGTAATAGATGCAACAATTGAAAATATAAATTTTATCTTAGGACCGAAAAAAGGA
TTTGCTCCTGACTTATGAACTTGTATCTATATGTTTGCATTAGGCGAAATTCAGTGGAAG
CATGCCATATCATTGTTCCAAGAGACTGAAAATGTAAGAGCGCATCACAAATTGTTGGTG
GCTACTGCTCAAAGCCTGGTCCCATATATAAACATTTAGTGCTTCATTTTTTCCCCTTCC
AAGTATGCTTTAGCAAGTCGACATGGGTTACCGTACCATATGTCAACAGGACATTTTTGA
TCCTTGCTTTGCTTTACTATCTTGTTCTCTTTTAGCAACCCCGGCCCATATCAAATTGCC
GTATTCTTGTATCAAAAGTTATTGGATAACCTGCACATACTGGTCCAGTTCATCTGCACA
AGTGACGACAGAGAGAGTATAAAAGGTAAGAAGCAAAACAACTGGAAATCTAAAATTATC
TCAATGCAGTAGGACAATAGAAACAAATGAATCTAGTATATGTGCATCATAATTATTTGG
CACCATTGTTCCTAATGCATATAGATAATAAACAAAAAAATACACATCTTGTACGAATTA
ATTTATTTATATAGATGAGTTAGAACTAAACTGCCGAAATATTGTCCTTTATATAACCAA
AAGAGTACAAACAATGTATCAAAATCTGATTTCAGCACGTTCCTAATTATCATCTAAATG
TCTACTAATTGAACATATCTGACATTAAATTTAATGGAGCTATTTATAAAAGATGAATAT
TGCTATCAGGTTTTGAACATACAAATGATCAATGCGGATATACCTATTAGACTTCATGAA
TAGGACGAAATAACCAAAAGGAAAAAACATGCGGGATAATTTACCTGGCTGTCGTATGCT
TTGTTGGGGAGGCTCCTTTACCCTGAATCTGTTCACCTGTGCGCTGGCATACATGTACAT
GTGTGTGTTGCTATTAAGTAATTAAAGCATCCGTCATCAACTAAAATTTGGACCGAGCCT
TTCAACCTACTTGTGCATGTTCTGCAGCCTTTCAATAATCACACAGGACCAGCTCGTTCC
TCGTCGGCAAGGGAAATAATATATGCTTCAGGTGAGCTATCCGGCTCTGTGTCCATTGGG
AACCCATGGCTTGGAATAGGGAGTCTGAAGAAACTCTGCCTTAATGTATGGATGGATCCT
TATGTGTACGGCAACGTATGGCCGCATGGCCATTGGTAAAACGTATATTTCAGCTATATA
TAGGGTTAGGTTAGCAGGATTGAAAGGTAGGTATGGCTGAAAATTTTGATTCACTTTGTT
AAGGCGGCGACAGCCGGCATGGCAAAGTCTTGGACATGGGCGTTAATCAGACGGGATGCA