morexGenes - Barley RNA-seq Database

Contig contig_244594
Source Contig contig_244594
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_244594 (7064 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_244594

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_34794	1	1574 bp	AK365096	Available	Available	None
CDS Structure of MLOC_34794

Contig Sequence (7064 bp)

>contig_244594 7064 assembly3_WGSMorex_rbca.fasta
TTACTACGGGCAGTGTTTTGTCAAGGTATCCACACANNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAATAATAACTATTTAT
TATTGCCCCTAGGGCATATTTCCAACATTACTTTGGACCGTCACGGAGACTCCTCCTTTG
TCATGTCTGCTCCATTCTTTTATGGTAGATGATAATCATATTAAATACGTCATTTCACTA
CCATTTCTTGGGTTTTCTGCCATGAAGTGTTATTTGATCCAAAAGATGTTTCCTAAGGAA
TATCAACAAAAGGAGGTGTGCAAATGCGATAAAATTCCACAAAGCCCACCATGTAGGTAT
CAGATAACCATCAAATTCATCACATAAATTGGACTCATTACCGACCATCATTGCCCACAA
AGTGTTTGGCTGTTGTCCTGGCCACTTTGTGAATTAATCACTCTGTAGCATCATGGCAGA
TAGCTTAGATTAGTTTCTTTACAATAAAATCATATGTTCATCTTCGTTTGAAAAATCATT
TGACTATTGGAGTGATGACATGGTTTCTACGCTTCTTATCAATGAACATATTTCAAGGCA
ACAACCATTGTTGAGGGGGTCAATAGAAGGTCATGCGCCTAAGTTGAATCGTAACACAGA
GCAGGGACATCTCCTACTCTTTAAGAATTATTTTCATCGAACAAACCCACTATCCGAGCC
AAGCTTTTCCACCAACGTTTTCAGATGGAGAGACCATTGTTCAATGGTATTCAGGAGCGA
GTGATGGGTTATGATGATGATTTCAAATGCAAATGAGTCGCCATCGGTAAGATTGGCTTA
TCCTCTAATGGAGCGCCATATTTTGATATGGAACCGTCACAGCAACTCCTCGTTTGACCC
GTTTGCTCCATTCTTTTATGGTAGAGGATTATCATATTAAATACATCATTTCACTACCAT
TTCCTGGGTTTCCTTCCATCAAGTGTTATTTGATCCAAAAGACGTTGCCTGAAGAATATC
AACAAAAGGAGGTGCGCAAATGCGATAAAATTCCACAAAGCACACCATGTAGGCACCAAA
TAACAATCAAAATCATCACGTAAATTGGACTCATCGGCGACCATCATCGCCCAAAAAATA
TTCGGCCCTTTTCCCACCTCTTTGGGGATTCATCACTCCGAAGGATCATGGCGGATAGCT
TAGATCAATTTCTTTATAATAACATCGTATGGTCATCATCGTTCAAAAAATCATTTGATG
ATGAGAGTGATGTTATGGTTGCTACACTTCTCGTCAATGAATAAATTTCAAGGCAACGGC
CATTGTTGAGGGAGTCAATAGAAGGTCATGCGCGTGCATTGAATCGTTACACAGAGCAGG
GTCATGTCCTACTCTTTTAAGAATTATTTTCATCGCACAAATCCACTATTCCCTACCAAG
CTTTTCCAACAATGCTTTCGGATGCAGAGACCATTGTTGAACGGTATTCAGGTGGGAGGG
GTGGGTTATGATGATGATTTCAAAAGCAAGTGAGTCACCATCGGTAAGATTGGCTTCTCC
TCTGATCATAAATATATTGAGGTTGTTTGGAAGATTGCATATGGAGTTCTCGGTGATCTT
GTTGATGAGTATGTACGCATGAGTGAGTGTACATGCCTTGGGTAGTTGTTCTGTAAAGCT
AGGTTTCACGTGTTTGGCCTGAATTACTTGAGAGAACCAAATGTTGCGGATATAGACCTT
TTGTTATCGATCAATGCTTCGATATGTTTCATGGGATGCTTGGAAGCATAGGTTGCATGC
AGTGGGAGTTGAAGAATTGCCCATTTTCTTGGCATGGGCAATATAAGGGACATGTTGATG
ATTTCACGGCCATACTTGGAGTTATGGCATCACATGATCTCTTGAGTTAGCACTCTTTTT
TGCATGTGGGTTCTCATAATGACATCAATGTGCTTCGGCACTCTCCGGTGTTCTCGTGGT
TTTCCGTCTTTCGGAAGGGAATTTCCTATAGGTCAACTAGGAGATCAATGGTCACCATGC
AACAAAGGATACTACCTGGTTGATGGCATCTATCCTCTGTGGTCTATACTTGTGAACAAT
ATTCGATCCCGTAGAAGAGAAGATGGCTAGGTTCACCAAAGAACAAGAGAGTGTTTAGGA
ACGATGTGGAGTGTGCTTTTGGTGTGCTTCAATCTCGTTGGGCTATTGTTCGGCAACCTG
CTAGAACATGAAGCGTTGACACTAGGTTAAAGGTGATGACTGTTTGTGTGATCATACACA
ACATGATTATAGAGGATGAACATGATGACAACATCTATGACTAAGGATGGGATTAAACCA
GGGTGATTTGATTGAGCCCAAGGGTGCAGCGGCACCGGCTGCACACTTCATTTGATTTCA
TCACAAAATACATTATTGGGCAACTCACACTAAACTTCATGAGATTTGCTTGAGCATATA
TGGTCCCATATAAAAATATCAATAGTTCGATCTTCTCATTTTTATTCCAATTTATTTGCT
ACAATTTTAATTTCATTTAGTTGTAAACTATATGATTTTTATTTATTTTAGTGTAAACCA
TGTGACTTGCTTGTTTAATCATGTGTGATATTTAATTTATTTCAATCAATATTGTGTAGA
ATGGCCAGAATAAAAATTGATAAAAAAGAATAAAATGGACAGGGCAAACTAAATGGGTCG
CCTCATTAGCTCTCATGGTCAGAAAAGAACAGACAACGACGGGTCCTTGCCAATGTGGCC
ACCAAAAAGACAAAAAACAAACATATTTTGTGTTTGTTTGAGTTGGTCTGTTGGAGTTGT
CCGAAGCCTCCATGATGCGAGGTCGCCATTTGATATATGTTTGGATCCAAAATGTTTGCC
CTAAGCTTATCTGGAACTGTTCCGAGCAGGGGCGAATTTGTTGTAAACCAAATGCTCTCC
TCACGGTCGAATTTATCACCAAAAAGATGCTTCTAGCAAGGGCAATTTTGTCACAAGGAA
AATGGTCTCAGCGGAGACGAATCCGCACCAGTGACAACGATTCCCATGATTGTCGTGGGC
GCTGGGCCTTAACCGGCCGCTCCCAAGGAAAGGTTCAAACTTCGAAAAGCTTGGGGGAAA
AAAGAGGTGCCATTTATCCCATGGTCCTCCGACCAGAGAGTATTATACCCCTTCCTAGTA
ACCACGTTCCTACACGTATCTCCGACGTAAACAGCTCACTTGATCAACTCGTTTTCTTTC
CTTATGTGCGGGTCACCAACTCTCTTTTTTGTTGGTTCTTGGTTGTTAGAGAGACGGCGA
CGTGGCGTCCCACAACGTCGAACCGTGCACTCCGGAAAGACCAAGCCAACATTCATCAAC
TGAGTCGATCACCAACGCAAGCAATCGAACATGAACTCATTATTAGGCGACTACGGCTCC
AAAGAAAACAAGAGCACGCACGTACGCGATCCAGAACCTAAATATTCAAGTACGCCGGAT
GGGGGCCGGGTCAAGGGAAACGAGCTCGATCGCAACCGCGTAACCCGTCTCTGTCCGCCA
CGCTCATCTCCACCTCCACCTGACCACCTCCAGCCGTTGGTTCGCTCCTTCCCCGAAGCG
ATCGGGTCAACTCGGGAAGCGCTGCATGCAGCTGTAGCACACTGGTGGCCCTTGAATGCG
ATGCATGCTTCCGTCGCCGCGCCGACGCGTACCGTATCGACGGCGACGCCAATCATGCAT
CAACTTGCATTATCCTGCCGTGTGCAGATGGATACTGGATAGCTCGTTCGTGCATGCATT
CATTCATTCATTCCTCCCCCTTTCTGTCTCCTACACGCGCACGAACGCGACGACAGCGCT
CTATACCTCCGTCTGCGTGTACAGGAGGCAGTGCCGCCGCCATAATACGACATCAAACTG
TTACCAACTAACATGTGGTTGGTTGGATGATCAGAGGAACAGTGATTTTTCTAATTTATT
AGTGTTCAAGTTCAAATGGTCGTATTATTATTATATTTATTTTAGATTTTTTGGTGATAC
ATGTTTAGTGGAAGAAAATGTTTTCGTCAACGACGAGGTGTCTACAGTGACTCGATAAAT
TTTAAGATGATATGACAGTCCAGTCTCTCGAAGATGCTCATAGGGATAGGATCGTGTATA
TTCAAAAAATGAGTGTATGCATATGTATATGAATAATTTTGTCTGTACTATTTTTGAAAA
AGATATTAAGATGTTCATACTATAATATTAAGATGGGCTGTGTATAATATTAAGTGCCGG
CTCAATCGGGGGCGAACGGGCACGTCAGGGTCAGGGCGGGGCGAAGGAATCCTCCACTGC
ACGTGGAAACGGACGACGTTGGGGCGAGGCGGAGGGATGCGGGAGGCCCCGGGGCGAGGC
ACGCCGTCGCCGAAGACGGGCTCTAGGGGACGGCAGGAAAGAAAAGGCTATAGTAGGATA
CAATTTTATTTATCCAGAATATTTCGCATCATAAGTGTTTTTATACGTGTTTTTAACGAT
TAACTTTTAGGGAAGCCTATACTCTTACGATCTCATTACGAGCAGTGTCATCCAGTAGCC
GGAGACGCGTGCACACAGCACCGGCCAGAAAAGGAAAACCAACGTACGATCCTTGCCCGG
TCGTCGTGGCGCGCACGACGGTGGTACGAAAACGACGGCTGCTCCGGTCGCGTGCGGTGG
TCGAACTAGGTGGTTGGAGACTTCCTCGGCCCTTCATTCCCACCGAGCCGAGCACAGCAC
AGTGGTCGAGGAATGGGATAAAATCAAATCGTTCCCCTTTACGTTCCTAAACAAAGCGCC
ACGATTCACACGACAAAATGCGTGCTGTGTGCAGCGGTTTTTCTTCGCTGTCGTTCTCAT
CCGCGAATGTGTCACCGTGGGATTTGACATGTCTCGGGAGGCCACGACAGAAAAGGTGCC
TGGAACCTTTTCTCTGGCTTCAGTGATGGTACTAATTCCTAGCGTCATAGCACATGACAA
TAAGAAGCAGTTGACAGTTAAAGAGACCTAGAGGCACTCGGTCCGTTCATCACACGTTGC
AAAAACTTTCTCCTTGTCTTTTTTTACCAATATATACATTGACGTTTCTTGAGGGGGAAT
CACACGAGAAATCTATCGAATTGAATAGATGACACGCAAGTAGTAAATCGGCGAATCAAT
TTGTGATTGGATGATTAAAAGACTATGATATTCTCAACCCTCAGGGTTTAAGTACCGATG
CTTGCATTTATTCTTGAGGTGCTCATATGAATAGGGTATACGTGTGTATACTCCTATGAA
TAAATATAGGTACGCGTATATGAGTGTCTGCGTATATACTACTCCTATGTTAAAAAGACA
AACAGTAAACCAGGAAAATGACGGCATTAGAAAGCTCCTGATTTTCCCCGCAAACAAGGA
AAAGCTCCCGATAATATAACAAACTCGAGCCTATCTCTCCACCTGAGATCCTGAGAAAAC
GACACCGCAATACGCAGTGCTCCCCAGCTAATCAAATACCCCCACCACATCCAAGCCCTT
TCACCACTCCAATACTCATCACAACCAAGCATCGATTCACTTTCTTTCCTGTGGGTATTA
GTAGCAGTTGTTAACTCCCACTGCTCATCTATCTCGTTTCAACTCATCGTCAAGCAACAA
GTGTCTCAGCACCACCTCTACAAAGAGAATCGATCGCCCACTCCGGTGATGCTCTCCAGT
TTTTGCGGCCATCCATGTCCGTGAAGACCTTCGTGGCCTCCTTCTAGAGCCCCGTGCCGA
TCGATCGCCGATGCTTTGGCCGGAATTCTTGCACCATGCCGCCACTTGTTGACATGCTCC
TCCTCGCGTCCGTGCTGCTCGGCGCAGCCAGTAGCGCGGTCGCCGGCGCGGACAACTACC
TCGTCGTCTGCGGCACGTCGGCGAGCGCCACCGTCGCCCCCGGACGGACGTTCGCCGGGG
ACGCCCGTCTGCCCGCCAAGTCGCTGGCCGCGCCGCAGAGCGTCGAGGCCAACACGTCGC
TGACCGCGGCCGTCCCGTCCGGCGAGTCGGAGCTCTATCGGTCCGCGCGCGTCTTCACCG
CGCCAGCTTCCTACACGTTCGCCGTCAAGCAGCCCGGCCGGCACTTCGTGCGTCTCCACT
TCTTCCCCTTCGCGTACCAGTCCTACGACATGGCCGCGGACGCCGCGTTCAACGTGTCCG
TGCAGGGCGCGGTCTTCCTCAACGGGTACACGAACAAGAACGGCACGGCGGAGCTCAGGG
AGTTCTCGGTGAACGTCACTGGTGCCACGCTGGTGATCGCGTTCACGCCGACGGGGAAGC
TCGCGTTCGTGAACGCCATCGAGGTCGTGCCGCTCCCCGATGAGCTGATCGCCGACACGG
CCAGCATGGTTGACAGGGCTGTCCAGTACACCGGGCTGTCGACGCAGGCGCTGGAGACGA
TCCACAGGATCAACATGGGCATTCCCAAGATCACGCCTGGTAACGACACGCTGGGGAGGA
CGTGGCTGCCGGACCAGGGGTTCCAGCTCAACGCCAACTTGGCGCAGCATAAAGACGCCA
AGCCCTTGACCATCAAATACGACGAGAAATCGGCACTCTCCTCCGCGTTCACGGCGCCGG
CGGAAGTGTACGCGACGGCGACGAAGCTGAGCACGGCGGGCGAGGTCAGCACCATCAACG
TGCAGTTCAACATCAGTTGGAGGTTCGACGCCCCGGCCGGGTCGGATTACCTGCTTCGGT
TCCACTTCTGCGACATCGTCAGTAAGGCAGCCATCGGAATGGCCTTCAACGTCTACGTCG
GCGGGTCGGTGGTGCTTAAAAACTACGAGATTTCGCGTGACACCTTCAACCGGCTATCCA
TACCGGTGTACAAGGACTTCCTCCTGGGCGCCGAGGACGCCAAGGGCACGATCACCGTGA
GCATCGGGTCGTCGACCGATGACAACGCGTTACCTGACGGCTTCCTCAACGGCCTCGAGA
TCATGAGGCTAGTCGGGAGCGCCGGCGCCGGCGCTGCCGCCGCGTCCCCGCGCCGCTCGA
AGGCCAAAATCGGGATCATCGGCGGCTCCGCCCCCTGCGGGGGC