morexGenes - Barley RNA-seq Database

Contig contig_244525
Source Contig contig_244525
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_244525 (8692 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_244525

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_34756	5	1954 bp	MLOC_34756.1	Available	Available	LOC_Os06g33710.3, FRAME:+2, EVALUE:0.0, 13106.m03480 protein spermidine synthase, putative, expressed
CDS Structure of MLOC_34756

Contig Sequence (8692 bp)

>contig_244525 8692 assembly3_WGSMorex_rbca.fasta
ATCCGTATGTAGTTTATAGTACAATTTTTAAAAGGTCTTATATTTTGAAACGGAGGAAGT
AGTATTTTAATCCTTATAGCCTGCTGACTGTACCTTATTATAGTTGCTCTAAACAAATTT
AGCAGCGCGCTCGTTTTACAAGGGAACCGAAGGCGTGCATACTGTGACGCAGCAAAAGTT
GCGGCCTGAATGAGTTGCCATATTCTTGAGTGTTGAGTTGAGTGGCATGCAAGGGAGGAA
AAAGGAGGTAGGCAGGCATCTTTCCGTGGCCAAGGACATCGTCCCTTTTCTCCTCCAAGA
ACCGGATGCGGAGGAGACACCTCACATGAAAGGTACATCCAATCCGTTTGGCACAGGACG
GTTTGGGGTCGGGTTATCTCAAGGAGAGCATCGCATTCCGTCCTTTTAATGCCGTCGAAA
TCAAGCACGAGCCCTTCGTTTCTTTGGTGCTCCCGTCCCGTCTGCATCTACCTACCGTGG
ACGGCACCAGAAGAAGGGCCAGTCACGCGCAGTGTACTAATCACATTCCTTTCGGTAGAA
TTTGAACGGTGTTCATATTTTTCAGAATTTATTTTAGGTTCCAGCGGAATACGACGCTCC
TGTTGATTACGACTTACGGAATGCACGTGTTAATTCTAAAATATGCATGATATTAATATA
TGATATTTTTCATTATTACTTCTTCTGTATCATAAAACTAGTCTAGTTTTTTTCAACGAC
GAATATTTAGAAACAAAAGGAGTATCAGCTTTATATTTATAGTGTATGCGCGTGTGCATC
GATAAAGATGAGTGTGAACGCAGGAGTGCAGGTGATCGCCTATTTAAGCTTCTCCTGTTC
TCGGCCACCGCATTCCCATTCGCTCCCAGCAGCGGCACGTCGTCCTCTTCCGCCGTCCGC
GTGTACGTCCAACAGGTGAGAGCTAGAAAAGCTCCTAGCCTAGGTGCGCACTCGTTTCTT
CTTCTGGCGCCTGCCCAGGTTCACTTCCCAACCACGGCGGTGCTCCGTCGCGTCCAGGTT
TTCTTCCGGGTGCTCTCTCACGCCAGAGGTGAGAGGACTCCATGTAGAGGCTGTGCAAAC
ATTTTCGATTTAGCCCTACAGATTCCGTGGAATTGTTCCGCTGCTGTCGGTGCTCTTAAA
TCCGGCAACTCAAGCGGCCATTCATATTCAGCCCCGGGACACACGGGCAGATGTTTCCTG
TTTCCTTTTCTTCGTCTTCTTCCGTTCCACGCCAGAGTCCCCCGAACGAGGTTGTAGCCC
GACCTGCTCCTGGAGATACTGTATCTTTCTTCACCACCAAACAAAAGACGCCGTTTGTTT
ATTTCACCACCGCCGCCGCCGTCCCGTCGTCTTCTTTCTGGGTGCACGCCAGGTGCTTGT
TCCTTTGTGTCAGTGCCTCTGCTTGGCCGTGTTTCGACTTCGATCTGCCTGCCTGCCTGC
ACCATTGCATTTCTCGGAGTTTGAACTGGCTGCTCCACTTCGATTTAGCCTCTCTACTTT
ATTCGATGATTCATATAAAGGCGCCTCCGGCATTTTTCCGATTTTATTAGTGGTGGCTGC
ACGCAAAGATTCTGCATCTTTGTGAGAAAACGAATCTGGATTTATTTGATTCATAGATTA
TATGGGGTTGTGTTCTGTCTTGTTTGTCTTCTTGTTGTATAATCAAGTTTCCAGTCATGC
CTTATCTACACTTTCTGTTCCAGAATACTGTATATGTTAGGGGGCGGAAAATACTACCTC
CGTCCCAAAATTCTTGTCTTATATTTGTTTAGATATGAATGTATCTAGTCACGTTTTAGT
ATTTAAATATATCTATTTCTAGACAAACCTAAGACAAGAATTATGGGATGGAGGGAGTAG
CATACATAATCTATCCAACTTTGTTGGATTTTTTACTACAGCTTCAAACATTCGTAAGCC
AGCCACAACCGCAATCAAAACAAGCCTTGCACCCAGCTGAAGCCTCAAACTGAGATGGTG
AAAGCATGAGCACAAGGCGATAGTTCAATTTGTTTCCTTTCATTCATGTTGATCGCATAT
TATAATACTAGTAGTAGTTGGCTTGAATGCCACGGTCAGCACCTGAGCATTTGTTCCTCT
TTCGTGGTTGTAAAGTAATTTTGTGCCTTTGTTGATTACCTAGTGAAAGAAAGTTATTCC
CGGCCATTGTCTGTTTTTCTCATTGTTGCCTGCCTTGTATTGTTCTGTTGATCCAGAGGC
TGGGAACTTTAAAGGGGAACAGGGTTCATGGAGGGTGGAGGCGCAAGAAATGTTTCTGCA
GCGGCAGTACAGACAAAGGGGACTGGGGATGATGGCTCCCGCAAGCCATTGCCTCCTTGC
TGTGTCAAGGCGCAAGCTGCTGTGGCAGAATCTGAGGCCAAGTGCCACGCTACTGTGGTG
TCCGGGTGGTTCACAGGAACCCGCTCGCGCTCTGGTATGCATGCTCTGATTGGTGCTTTG
TTATTGCATTTCTAGGAACGATAAATGTAGAGGCATGCACATTTTCTGCTGTTCTGATAT
CGAAAACCAATTTGCTGTATGTTCAGGTAAACCAAGCAAAGCGCAGTACTTCAACAATCC
AATGTGGCCTGGTATTTCCTTGATTCATATTCCATCCATGTTTTTTCTCAAACATTCCTT
GTGCAAATGCTGTCCCTTTTACTGTGAAAGTTACAATTTTTTCACAGATATAAGCTTTTC
TAAAATGCTCCTAAACATTCAGATCTGTTGTAACCTTTTTCCTGGCAGAAACTGTAAGAG
TGTTTTCTTCAAGGAACTGGATGGTAACTATACCATCGATCCTAGCTTTTAATGTAACCT
ACTTGTTCGGTTTACAGAATGGAATCTGTTGGTACAGCCTCACTGTTAGAAAATAACAAT
CGCTTCCCACCAAAATAATGCAGTGATTCCGTGATGTACTAATCATAAATACATCCCAGG
TTGATATGTTATGAACTGAACGCCGAGTATTCATTTCACTTTTCTTGGCAATTCCTGTTT
GTACTTCGGGTCGCATTATCCAAGTAGATATGGGGCCTGAAAGATCAACATTTGTGTCCC
TAGAAGATTTGTAGTACACTCCATCCCGCCCAGGAAAAAAAAGTAGATTACATATCTGAA
GTTATGAAATGGCATTATAGGTTTTACTGCTTGAAGTTCTTTGCACCATCTTGCTTCTCT
GGTTATGCCGGCTATTTCTAGTGCGCGCATTGTCTTTGAAAATTCCTTGATCTCTACCCA
GTATAATACTGAAGTAACTTACTTGCTTGAGCTGGTCAGTGTTGTAACCAGAGTTACTTC
TTCTATACAGGGGAGGCTCATTCGTTGAAAGTAGAGAAGATTTTGTACCAGGGAAAATCG
CCATACCAAGAAGTTTTAGTATTCGAGGTTATTCTTGATCTTCTAATTGTGTGCACGTAC
GTTGTTCTGAGTCTGCCAGACATAGTAATGTATAACGTGTTACGTTGTGTATGCAGTCTT
CAACCTATGGGAATGTCCTTGTGCTTGATGGAATTGTTCAGCTGACTGACAAGGATGAAT
GTGCATACCAGGAAATGGTTACTCACCTTGCACTGTGCTCAATTCCATCTCCTAAAAATG
TATGTATTTTATTTTAAGCCATAAAATATGCTGTCAACTTATTGGATTTACCATTTAAAT
TGAACTGGAGCATATACTCCAACAGACAGAATCTTCTTTTTATGTGCAGTTACTGAATTA
TTTAGAGTGGTCACATTGATTCTTCTATAAAGTCGCTGAAATCTTCATACCAAAAAAATT
TCACTTTACTCTCATGCAGGTTTTGGTTGTCGGAGGTGGTGATGGTGGTGTACTAAGAGA
AATAGCCAAGCATGATTCAGTGGAGAGTATAGACATATGTGAGATTGATCAGCTAGTTAT
TGATGTAAGAACCATCTCTTGATTTTGCTTTGAAGTGTAATCATCTAACATCTAAAATAA
TCGTATTCTGATGTATGCCTTCAAATCGATGCAGGTTTGTAAAGATTTTTTCCCACGTCT
ATATGTTGGATATAAAGACCCTCGTGTCAGACTTCATGTTGGCGATGGTATGTTAAGAGT
TAAGAAGTTGTTAAGCTTGTGGTATTATTCTGTATAATGTTCACAGATCATAGACATAAT
CCCTTCTTTTATAGCATCTCAAACTTGTCATCATGTCTGCTGACTGCTGGTCTTGATTCT
TGTAAATTTCATAGCAAACTTGCATTTCTTTTGCAGCTGTAGAGTTCTTGAGAAATTCTC
CAGAAGGAAAATACGATGCCATTATTGTTGATTCATCAGATCCAATTGGTGAGTTCTTGC
TATTACTACACCATACCTGCAGCTCTTTCATTTTGATTAAGGAGATCAAAATTTCATTCC
TGTAGGGTTGACTTACATGGTTCTTTCATTTAGATACTTGAAATTTTCTTTCACGTCACA
TTTACAGGGCCAGCCCAGGAACTTGTGGAGAAGCCCTTTTTTCAGGCAATTGCTAGGGCT
TTAAAGCCTGGCGGCGTTCTGTCTAATCTAGCTGAAAGTATGTGGCTGCACACACATCTA
ATCCAGGATATGCTTTCTATCTGTCGGGAGGTATTCAAGGGCGGCGTGCACTATGCCTGG
GCAAGTGTTCCAACATATCCTAGGTGCTCTACTTCTCTGCATCATCTGTTCTAGACTTTT
CTCCTTTCACTTCTATGTATCCATTTGTTATATTTGTGCATGCGTATTTCAGGTTTTATT
TTATTGTTCAATTTCTGCTGAAATCTCAAATACTTAGAAAGTAGTGTATTTGGGAATACA
AAGTCATGCCCAATTATATCGTAGCACTACCTGTGAAGCATTCCTGAAAATAAAAATATA
TGAAGAACACAGTCCGCAGTTGAGATGATATCATGCTCATATTATCGTCTGTACAGAATG
CAAGTTATTTCATCTATATATCTGTTGCTGCCAAGTTGAAGTGGTTATTGTTGGCACTTA
AAGTAGTGCAGGCAAAATGTCCTCCTAATTTTCGTGAGGTTGAGCAGAAGCTGGAAAAAA
AATCAATCGTTTGAAATACTTATTATACTCTACTAGTCTTCATTGCCAACTGAATGGAGA
AATTGGGTGTAGGTTAGCCAATTAGCATACTGACCCTTCTAGGATACTCCTTACCACTAT
CTCCATTTTAGCAGGTGGACTCTGCTCACTGCATGTTTTGGCACTCCGATGTCGGAGGTG
CATACGTATATTAGTGTATGCTTACAATCAGACTATGTTTGATGCTCAATTTTTCCCCTT
TCCTAACATTTGGTGGTGCAGAGTATAAGTAATTTATCAGTTAGCTGTAGCTGCTTATTG
TTTATATGGGTACCCATTTCATATGTATATAAGCTAACCATCTAAATACTTGAATTTTTA
GTGGTGTCATCGGATTTTTGCTATGCGCGAAGGAAGGTCCACCGGTGGACTTCTTGACTC
CTGTGAATCCAATCGAGAAGATTGAAGGAGCTACTAAAGATGGACGAGAGATGAGATTTT
ACAATTCAGAGGTTTCGCCTTTTGCCTTAAAAGATGCTCTTTATTGCCACAGGGATGCAA
GATTTGCAATAGCGAATTTTCAATTCAGTAGTTAGACATCAACTCCTTTTCTCTTGTTTG
ACAGATTCATAGGGCTGCTTTTATTCTGCCAACATTTGTAAAGAGGGAGCTGGAGGCATA
TAACACTTCCACTGAAAAGGTAAGCCATATATAGTTACTCGTCCCTTGTCTGCGTTTTGT
TCCTTTACAGTGTTTTGTATCTTTCATCCCTCGCAAACAGGGAGGGTCTAGGCTCCAACT
GATTGCGGCAATTATTTATAACTTACAAACTAAATTTCAATTGACATGAAAATGAGCTTT
TTCGATCTACAGACTAGTGATTTGCAGAAAGAAAAACCTGCAGACTAGTAAATTCAGATT
GTTGCAATTGAAGAACTCATTGGTCTTTTTGCTATATCAACCCATGACAGGAGAAACTGG
AGAAGCCAACGGCGAAACCAGTGAAGATGAAGGTAATGCGGGACAGCGCTATCACCGCTT
CCTAGACCAGGGACAAACACCCCTATGTTGTCCATCTTCCCCCACGAGACCCGCCGCGCT
GTATATCCACGTTCCACGCCTGTCCTTTATTACCAAATTTTATTTCAATAGGTACATGAT
TGTGTGGTGCTGCAGCGTAGTTGCGTGGCAGAACCGAGAGTAGAGTGTCACTGAGTGTGT
ATGGTGTGTTGCAGCTAGTGAATAAAGGAGCGGACAGAAGGGAATCTGTGATGCGTTACC
TGATCTGTGCCATGTACGTATGATGTTTCATTGTTACGTGAGCTCTAGTGGTGCAAGTAC
CAGGACCGGCTATGAGCTTCTGAAATATCACCTTTGTTCTGAAGTATAAGACGTTTGGGA
TATTTTTAATATATACAACAGAATGATCAGCGTGATCGTATTGCCTTAGAGCATCTATAG
CGGCGCCCCCAACAAGCCACCAGAAATTATTTTTTTGCCGGCGCCGAAAAATCCTACCAG
ACGGGTCCCCAGGACGCTGTTTTTGCCGGTTCGGTCCATTTTTTGGCCACCCGATCCTAG
GCCGAACCCAGTGCACTGGGGCGTTTGGGGGCTTCGATGTAAGGTAAAACGGCACGTGGG
CCACCACTGTGAGGCGGAAAAAACCCCAACAAGCCCCTCAGGAATTATTTTTTTGCCGGC
GCTGAAAAATCCTCCCAGACGGGTCCCCATGACGATGTTTTCGCCGGTTCGATCCATTTT
TTGGCCACACAATCCTAGGCCGAACCCAGTGCACTGGGGCGCTTGGGGGCTCCGATGGAA
GGTAAAACGGCATGTGGGCCACCACTGTGAGACGAAAAATGTTTTTTCCACCTCTAGATT
CATCCCCCCGCGCACAACACCTTTCGCCGCCGTGCTGATCCCGGCGCCGCCCATCTGCCT
ACCGTCGCTAGAAGGGCCATCTCCCTGGCAAGAAAGAGAGGGTTCGCCGCGGCATCGCCC
CCTGCTTCTGGCGAGCTTTTTCGGCGTTTCGGCCAAGCAAGCGGGGATATGGGTGGCTGC
GCGTCTACCACGCGCGCCAGGTGTTCGGTGATTTGTCTCGGCGATGGACTCTGACGACGA
GGAGACGCTCGCGGTGCTGCTAGAGGAGGAAGCCGATACCACGCCCAAGACGAAGAGCAC
CTCATGGTCCTCGTCGCTCTGGCCGACCTGTTCGCGAGCAACGCAAAGCCGCAACGAGGT
GGCTCGACGCCGGGCCGGCTGAAGGCAAAGCAGAGGCGCCGACGTTCAATAAGATCGCTT
CAGACTGTTACTAGATCCCATACGGACTAGTCGACGCGCACCCCCTTCCTCTAAAAGGAA
AATATAGGCTCCCCCCTTCGTCCTTTTCATGTGCTGACCTCTGCCCCGTCCAAATCGCAT
CGTTCACGGGTCGCGTCGCCCAGCAACCTCCCCCGTGCAAAGAGTCAGCCGTTGTGGCCG
TCCCCCATCTGGCTTCCTCCTATCGCCTGATGGCTCGCCGTCTCATGCCAGTGACGGGTT
GTAGCAAGAACAAACACGGCGAGCAGGACGACTCCGGGTTGAAAGCAAAAGCACATGGTT
CCAGCAAAAAAAATGATACGGCTCCAGCAAAACAATAATGTGGTTCCAGCAAAAAATGAT
ATGTTTCCACCTAAACATTGGCATGGTTGCAGCAAATACAACATATGGTTCCAGCAAAAA
ATTGATATAGTTCCAGCAAAATTAAAAGTGATTTTCCAGCAAAAAAACAACGCAACAAAA
AAATCATGGCATCGCCGCCGTAGCCACGCCAACACCATCTTCGCCAGTTGCAGCAAGTCA
AAAAGTTGGTTCAAGCAGAAAACTTGTGCAGCAAAAATCATGGCGCACGCCGCCTTGGCT
GCCCCTTTTCTGTTGCAGCAAAACAAAAAACTGGTTCCAGCAAAAATCAAAAGTGATTCC
AACAAAAACAAACATGGGTTGAGGCATCGGAGACTGCCGTCTCCACCGACGGTAGCAGGT
GGTTACGCATTTTTGATCAGACGGTTCCAGGAAAAAAATTACCGGTTGTAGCACTGAGGG
CGTTGTGTGCATCATCCAGTAGCTGCTAGTCACCAAAAAGCAAGGAAATTGCAGTTTACA
CCAGGTATTGTTACGGGTGTTGCAGCGATCACCTCCTCGACGTCTTTTTTGCAGTGTTCA
TCAGGTCCACGTCTAATTTGTCGCACTCGAGTCTATTTCCTGATTAGTCTTGTGTTAATA
GCCATCCCGATAGTGGGTCCCACAATACCAGAGGGATTGACTAAGTCTAACCGGGCAGAG
GAACCGACCTGCTTCTCGACACCTCGCCTCGCCCCTGTTTTCTCTCTGCACCCTGCCCCG
ACCCCCGACTGCGACGGCGGCCGGCAAATCGCCGCCGGCTGGCGGCCAATGATGGGCTTG
GGCGACGGCTTGGACTTCCTTCGCAATCCACCACCTTCTCCCGTGAATCGCACCCCAGGC
AAGGCGGAGCGAGGGATCCCACGAGAAGCAGAGGCCATGGCAACGACGGAGGCGACGCCG
ACGGCCGTCCAAACGGCGACGAGCTATTCGATCACGACAAACCCCAGCCACTCCTTCAAT
GTTTTCGGGTAAGGCCCCCAATTTCTCCCCCCTCCCTGCCACTTTGATTAGG