morexGenes - Barley RNA-seq Database

Contig contig_244186

Source Contig contig_244186

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

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Map Locations of contig_244186 (5516 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012

Predicted Genes from contig_244186

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_34570	1	838 bp	MLOC_34570.1	Available	Available	LOC_Os12g32240.1, FRAME:-2, EVALUE:6e-46, 13112.m03290 protein eukaryotic translation initiation factor 5A, putative, expressed
MLOC_34569	1	900 bp	MLOC_34569.1	Available	Available	LOC_Os02g56130.1, FRAME:+2, EVALUE:1e-122, 13102.m06448 protein PCNA - Putative DNA replicative polymerase clamp, expressed

CDS Structure of MLOC_34570

CDS Structure of MLOC_34569

Contig Sequence (5516 bp)

>contig_244186 5516 assembly3_WGSMorex_rbca.fasta
GGCCAAGATGCTCCGCTGCGCCGGCAACGACGACATCATCACCATCAAGGCCGACGACGG
CTCCGACACCGTCACCTTCATGTTCGAGTCGCCCAGTAAGCGAACCCCCCCGCTCGATCT
GTTTTCCCCCCCTTTGCTCCTCGTGGCTCCGTCGGTGACCCCGATCTGGATGGATCATGG
ATGGATGGATGAACAGATCAGGATAAGATTGCCGACTTCGAGATGAAGCTCATGGACATC
GACAGCGAGCACCTCGGCATCCCCGACTCGGAGTACCAGGCCATCGTCCGCATGCCGTCC
TCCGAGTTCTCCAGGATCTGCAAGGACCTCAGCAGCATCGGCGACACCGGTATGCTCATC
TACTGTAATCTTGTTATGCTGCACCTGCGCTTGTCATCTCTGTTTCTCGCTTGTCTGACG
GCGGCTTCTGCTCTGTGCGCTGCAGTTATTATCTCTGTCACCAAGGAGGGTGTCAAGTTC
TCCACTGCTGGAGACATTGGGACTGCAAACATCGTTTGCAGGCAGAACAAGACTGTTGAC
AAGGTTCCTTTCTTGTCTTGTTTCTCCACTAGTTACTATGGATATATTGTCCTTGTAGGC
ATTTATATTGTGAATTTTTTGGGGTGTATTGCATAACAAGAGTTTGGAATCGCATTTGCA
GCTATGCTTGTATTTTATGAATACCTTAATTTTAGCAATACGAATAGACAGTCACACCTA
ATTCTCAATCAGATCGTTTAGTGCTTACTCAGTTATAATATTTGAACGATTTGGTAGCTA
CTGTTGATGCTGTCCTTTACTTAAGATAATTAGCCTAAATTGTCTTACTATTTGCAGCTC
ATAGATACACACTACCCTACTGTTTGTTCCCTCGCATAGACTAAAATGGCAGTCTGCAGT
TAATTATAATTATGCTGCTTTCAAATGTTCAGTTTTCCTACAGTGTCATACTAAAAAATG
GTGTTGTTTCATAGCTTCGCCCACTGTCATATATACTAAAAGATGGTGTTGTTTCATAGC
TTCATCCACTGAAAATGATTCCAACAATCTAGTGAAGCCGAGCTACATATTTTCTAAGAT
GATATTTATCATAATACAAACTAGTTTGGATGAACCCTGTACTCTTTAGTGCCCTGAGCT
GGCGAGCCTACCAACTGAAGTAGTGTGCACAGTTACTTCAGTGAACAAAAAAAAATATTC
AGCTTGAGCCATGTATGGAGTATCCAGCTCGCCTATATTTTACGCTTGCAAATTCATTTC
AGTTTGGGCCTTGGTTTTCATACTGGAGTACTATTGTAGGGACATGTTTCAGTATGATAT
CTAATGATTGTCTTGTATCATTGCAGCCTGAAGAATCTACCATTATAGAGATGCAAGAGC
CGGTGTCACTCACCTTTGCTCTGAGGTACATGAACTCTTTCACCAAGGCAAGCCCACTGT
CGGACCAAGTCACCATCAGCCTCTCGTCTGAACTGCCGGTGGTTGTGGAGTACAAGATCG
GCGAGATGGGCTACATTAGGTTTTATCTGGCACCAAAGATTGAAGAAGATGAGGAAATGA
AGGCATGATTGTGTTCCAAGGATATGCTTGTCTTGCCTACTTTTTCCTTAGCTGTTAAAT
TGCTGTTTGCTTAACTATTGTTTGTAAGCAAAAATGATGTTATCCTTGTTTTAGCTACCC
TTGTATCTGTGACTGTTGCTCCATGGATTTCCAAGGATGAATGTTAGATTAGTGAATTAT
GCTAGTCCATGTTACACCAGTGCTGTTATGGTTAGATTTAGCATATTTTCTCCTTGACAG
GAATTTAGGGTGCTGTGTGGAAACAAGAAACCATAATTCCTAGCTGCTAGTGCTGATGTT
CTTTCAGAGAAGTAGCAACCTATTTGTTATCAGTTTGGTTCATTGGCAGCTAGCAGTGTT
GTTTTAGTTGTTGATTCACCAGATTGACATGTATGCCATGGTTAGTTGTATTACACAGCC
ACAAATCAGAACAATATTGTCATCAATGGAGTTTCACGTTTTCATTGGTTACTTGCTGAC
ACTACAAACATTACCAGGCATTTCATATTCACATGATCAATATTTCTTCACTGACTTAAC
TGATATGGGTAGTAGACAAAGGTGCATCTGATGATCAACATTACTTTACTTCACTAATGT
TATGGTTTGCTCTGCCAAAATGAAAACACCCAATGGACAGAACTTCTATAAATCCCAGCT
TGGATGTCAATTTTGACTGAAGTTACATCGATCCTGCCCTCAGACCTGACACATAAAAAT
GCCAAGTTGAATTACTCCCTCCGATCTATATCAATTGTCACTGGTTTAGTACAACTTTGT
ACTAAATCAGTGAGAATTAATATGGATTGGAAGGAGTAGTATTTTTCATGACAGGGTTTG
AGGAAGCAAGAGCCTATAATTCATAGCTGCTTTTGCAAGAGGCCTCACGCACGCAAACAT
CTTCCTTTTTTTTTAAAAAAAAAATCAGTTTTTCTTTTTGAATTTTCCAGTATTCTTACA
CTGAATGTTCTTTGCGATACATCTTTCCATCAATTTGTTTCAGTCTTTTTAGTTAGCTTG
GGTAGTGTTCGGTTGGTTCGGCATTGTTTCACCAGATTAATATCTGCTATGTTTGCCCTG
TAACTGTAATATTTCTGATTTAGAAGTTTTCCATAACGCTCAGGAACCTGCAAGCGACTA
ATGGGAAAACTATTACACAGCCCCACATTAGCATAACATTCATCATTAACAATGTTCCAA
GTTTTCATAGATTGGTTGCTGATAGCTACAAAATTCCCACTCTCACCATGATATGGTGAC
GTTCTCGACATAATATCAAAGGTGCAGTCTGACTAACTCAAAGTTGATCCATAAAATCAA
GTAATTCTTAGAAGACGCTGTCATGGTTTTTGAAATAAAAAGGCAAGGCTGATTTGCTCA
ATGTGGCATCCTGAAACAGGGCCACTTTCGAAAGTGTTCAGCGGAGGGGCAAAACGAGCA
AAACTCGAGGCTGGGTACTGGGTAGAGAATGCACAGATATATTGCAAAAACACTTCAGAT
AGGGTAGGGAATTTTCAACTTGACCACAGTTTATAACTCCATGATGGTACAACAACACAA
TAAATCCCTGGATTGGAGGAGTGATGTTTTAGGATACAGTGAGCGGCCAATTTAGGACGA
CAGATCAAGGAAACACAGACAACTTATTGTTGCAATACATATTACTCTTAATGTCTGTGA
CTGTTGTCATGAAGCCTTGTTCCTTCACACCCAAATAGATGGCCAACACGGCACGGTTTA
CCTTGGGGCGATGTCCTTGTACCCACAAATCTGCTCTTCTCCCATGGCGGACATGACCGA
CACCATCAGGTCCTTGCCTTCGTTAAAGCCATCCTTGAGCTGCACCAACGGAGAAATGTA
ACATCAGGTTTGGTGGGGTACGGAGGAAATCTTTCATGTGTATAAACGCACAACACTCTG
TAGTGAAATATTTAAAAAGACTTATATTTAGGAAATGGGGGAGTAGTTCAAACTACAAGA
GTGTACTGATAAATAAAGCAATACCTTGTAAGTTAGTATTTTTCTAACCATGAGTCGACA
CTTTTAATTGAAAAATCAAGAAGGTATCTCAGACTGTATTTCGTATGCAAGAAAGAAATG
TGCATGGATTACGTGGTTCATACAAACCTGGTCACGAGGGGAATCATCAGTTGGGAGCTT
TATGTCATCTTTGGTGCTACCAGTATCAGTTAGCAGAGTCACCTGAAAGAAGTGTCAACT
TCTCAAGGTAAACGCACATCCAGCAAAAGATGATGAAAATATAGGAGACATTAATAAAAT
AATCCAGCTTACAAATCCACCATCATCAGGTATATCAAGGAGCTGGTATTCTGTGATAAT
CACATAAGGAACCTGTAAAGATAGCAAAATTCATATTCTACTATCGACAGAAGCCATTTT
AATAGCAAAAAGTCCAAGAAATGTACTGACACCACAGTTGCGAGAAGATGACACACTATA
TTCAAATTTCTCGCCAGTGAAGATGTCAATAGCAACAAAGTGGCAGCTGGCATAACCTCC
AGACCCAGATGTAGAAACATCCACAACCTGCACATTTGTTCAAATGCTTGTCATTAGAAA
TCTATCAGCAAGAATAATAAAAAAGGCATCAGGGCAAGAATGAGCGAATAGGAGAGATTT
TAATCCTAATAAATATATAAAAGCACTAAAATCTGGAACAACCGAAGGAATTCATTGATA
TTTATTTATTTAAAGTGTCAAGTACATCTGGAATGCATACAAAAGTATACAGCTAAACAG
GATAATTGCACTGTCGGTAGCATTAGTGAACTGATTATCTAATGATACACTAAGAGGCAG
CAAAAGGCAAGTACCCAAAAATGTCAAGCATAGAACATACAAGAAAACAAGTAACCCAAT
CCAGGCTTCACATATTTGGTCTCCAGTCATGTTTCAGCCACGACTGAAATCAGCGGTACT
GCTTTTCAAATCAGCCAAATAACTTATCTTTTTAATTTGAATGAAATCCAATGAAACTTT
AAAGAAACCCAGTAAAGTTGAATATTTCAGTACCCACTGAATAAGCAAAGTTCCAGAAAT
TTCAGTACCCTCAGCTATGTACCTTTGCAGTAATAAAATGTACAAAAGATGTTGACAGAT
TTGCAATGGTGCTCTCCAACAAATAAAGTAATACATGCCAATAAACAGCATAAATACATG
GACTTTTTATTGAATATGGACCTTTTACTGAAATATTAAATATAGACTTCTTTATTGAAT
CTATTTTCCTGAATATGGACCTTTTACTGAATATTAAATATAGACTTGTTTATTGAATCT
ATTTTCCTGAATATGGACTTTTTATTCATCACCTTCACTAATTTAGCCGTAATCAAATTG
CTACTCCCTCCGTTCCTAAATATAAGACTTTTATAGAGATTTCACTAGAAAACTACATAC
AGAGCAAAATGAGTAAATCTACACTTTAAAATGTGTCTATATATATCTGTATGTAGTCGC
CTACTGAAACCTCTAAAAGAATTAATATTTAAAAACGGAGGGAGTACAACTCAGTTACCA
ATCTCTGTCATAGGGGGGAGGGGGGGGGGGCGACACATTAGGAACCTGAGTCAGAGTAGA
ACAGACGAATAAAAAGTCTCCAGTCAACAAAGATCATTACTGTACTTTTTTTTTCCTTTT
GCAGGTGACTTTTTTTGCTTTTATCGGAAAAATCTAATAGTTCTAAATTCTAATTAACTG
CCAAAGTAAAGGTGATCAGGCGGTACATCTAAACCAAGCCTATACTGCTAATCTTATGAC
ACAGAGACACCAATATGAACTGAAAAATTCAGATGATGTAGTACGCATACACGGCTAACT
CACGCCAACTCCCCCGCGCGACCCCATTCTGTCCGGCCTCGTTCGTTTGGGGTAAAAGGG
ACAAACCTGTCGGCCCAACGCGAGACGGCACGGACCCATCTTGTCCGTTTTGTGTC