morexGenes - Barley RNA-seq Database

Contig contig_244176
Source Contig contig_244176
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_244176 (7226 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location	No map location	No map location
Predicted Genes from contig_244176

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_34565	7	4086 bp	MLOC_34565.4	Available	Available	LOC_Os12g01360.1, FRAME:+1, EVALUE:0.0, 13112.m00045 protein expressed protein
MLOC_34567	1	1275 bp	MLOC_34567.1	Available	Available	None
MLOC_34566	1	1040 bp	AK374628	Available	Available	None
CDS Structure of MLOC_34565

CDS Structure of MLOC_34567

CDS Structure of MLOC_34566

Contig Sequence (7226 bp)

>contig_244176 7226 assembly3_WGSMorex_rbca.fasta
AGTGAATATACGATCTAAAATATGTCTATATACATCCGTATGTAGTCCCTTAGTGGAACC
TCTAAAAAGACTTATATTTAGGAACGGAGGAACTATATTATTTTTGATACATGACCGGTT
TATTTCTAATATCAACGAGAAGATTACATATTTCCACTTTCTGGGAGCGGGTTACTAATT
TAAATTCTTCCGAGCCATCTTCCTTTTGTGTGATAGTATTGATGCTTTTTACTCATTTTT
TTACTCATTCATTAGCTTCTTCTTTGTTCATTTAGGTTATTTTAGAGAACTTCTTTGCTC
ATTTGACAATTTTAAGCTGTCCTATTTAATTCATAAGGTAGATGATTTGTTCCACCAATA
TTGCTTCACGTCCAACGTTTTTTATACTATTTCTGTATGATACTACTATCCTGCTTCAGA
TATTGATCCGGCTATTCCATCAAAGGGTGATGGAGTACTGTCGTACGACCATTGTATGAA
AATTCGACATATGTATATCATTCATGTCGTTCCACCGTCATTGGGTTAAGGATTCAGCGT
ACTAAAGATAATAAGAGAGAGAAAGAAACAAGGTTTTAAACAGAAGAAATGCATTTTCAT
GAAAAGACATTCTTCTATTCTGATAGCAAGTACTCTTTGAACACTGAGGTTCTGATGTAT
TGGAGCCAAAAGTAACAGCTTTTTTCCGAAAAGGAAAAGTACCAGCTATACTTAAGCAAC
TGCAGAATCAGAATAGGTGTATTGAAATAGGACTTGATGTGGGTTCTCTTTACTCCATTT
TGCTCCTGTCATCCTGGCCTAACAACGTCGAATTTGTTTTGCAGCTTTATGGATTCGCTC
ATTCCTTTTGGAGGACTTGTCAGCGATACCTACGAAGCTAACAGCCTCACAGAAAATTCT
TGTCCTGAGGCCCTTCGGTGTCAACAGTGCAATGATAGATATGAGCAAGAAGTTGCTACT
ATCATTAGAGGAAGTGGCATTACAGCTGAAGACCATCACCAGGGAGGTCTACCTTCGCTG
CTGCAGAATGGCAGCATGATAGGTCCTAACAATGGATTTGATGCAGTCAAGGTGTGAAGC
GGCTTACATATTTTTTGACTTTTAAGTAAAATAATTTATGCACATGCCATCGTTTTGGTA
GATGCGTACCTTTGGATATCATTGGTATAAAAGATGTACAGTTTTTCTTCAGTGCAGGTT
AGAGATCAGATGGTATTGAATTCGAAAATATCGAATCTACAGAAGAAGTGGAATGAGTAC
TGCCTGCGGCTCCACCAAGGCTGCCATAGGATCAACAGCGTTCCATACCAGTTATTTCCG
CATTATATTGGTGTTCCAACCAATGGGGAAAGGGAAGAAAATCTGAGCAAAGGTTCTGAA
TCAGTTGCACCTCAAAGGGAGGTTATTAGATCTTCTGTAGTGTCTGCTTCACATAGCAAT
GCTACCACAAAGAGTATTTCACCCCCATCTATCTCTAACCAAAGGAATGACAACCTTATA
TTGGAACTTCAAGCTGGGTTTTCAAGGAGTGATGAAAAGCAGTCCCGCCATGAAACCCTG
TCAAACTGTCATGATCGCGAAGATCACGTGTCATCATCATCCGCTGCATCTGTGACAACT
GACTTGGTTTTAGGCACGCCTCATGAATCTTCTTCCAAGGCTACAAATTCTGCCAGCTAT
AAACATGTAGCTGATGCAGAGAAATCTGTACCCAAGAAAGTGGATGATTTGAATCTGAAG
CCTCTGCAGATGTTTGCACAACCCTTTGCTTGTTCGAAGAGTTCCACAAATATGGGGCAA
ACATCACCTAGTGCTCGGCATTCAGCAGCTTCTGGAGGTTTGTCTGCTTTTGGTCATTGG
CAGAAACCTTCACACCTCGCAGCACAAGCTTCTGATTTGAGTAATTACAAGCTACTTGTG
GAACGCTTGTTCCAGGTTGTTGGAAGGCAGGAGGAAGCCTTGAGTGCTATTTGTGGTTCC
ATTGTGCGGTGCAAGTCAATGGAGAGGCGCCGTGGTGCATGCAAGAAGAATGACATGTGG
TTTAGCTTTCATGGTTCTGATTGCATGGCCAAGCGCAGAGCTGCTTTGGCGCTTGCAGAG
CTCGTACATGGCAGCAAAGAGAACATGATTTATCTGGACCTGAGTCTCCAGGATTGGGCC
GACTCAAGTTACAGAGGAAAGACTGGCACTGACTATATTGTTGACGAGCTGAGCAAGAAA
CGGCGATCTGTCATCTTCCTTGATAATGTCGATAAAGCTGACTGCCTTGTCCAGGACACT
CTGACTCATGCCAGTAAGACTGGTAGATTCCGAGACTTGCGTGGCAAGGAAGTTGACATT
AATGACTCCATTGTTGTGCTGTCAACAAGAATAACCAGAGGCTCCAAAAGTGTGTCTGTT
GGAGTGGAAGAGGGTCATACTTTCACTGAAGAAAAGATCTTGGCAGCTAGTGGACATCAA
CTGAAGATCCTGGTAGAATCATGTACGGCGATCACCTGCGAAGACCATGGTGATAAGGTG
ATAGTTTCCCCTGGGCACCCTCTCGCCAAAATTCGTGCATCTTTGCACTGTGGGGGTTCA
GTCAGCAAACGGAAGTTCAACATTTCTGATGATCAAGAAAAGCTGCAGGAAGAATCACCG
AGCATTTCCAAGCGACTGCACAGAACATCAAGTGTTCCGTTCGACCTGAACCTCCCCATC
GACGAGGATGGTTTGAGCGATGCTGATGACCACAGCGGCAGCAATGACAACTCATATGGC
ACTCCAGAGAGATCCATCGACAGCCTCTTGTGTTTGGTTGATGAGTCAATCGATTTCAAG
CCATTTGACTTTGACAAAGTCGCCGATTACGTGCTGCAGGAGTTGAGCAATACACTCCGC
AAAGTTCTGGGCTCCGGCTGCACACTGGAAATTGATGTCGGTGCAATGGAGCAAATAATT
GCAGCGGTATGGGTATCCGAGGGCAAGAGGCCTCTCCAGGCCTGGGTGGATCAGGTGTTC
ACTGGAAGCCTTGGGGAACTGAAGGTCAAGTGTGGTAAGTATGCCAGCAGTTCCACTCTT
ATACTAGTGGCCTGTGAGGACATGGCAGCAGTCACGGAAGACTATGGTTTTGGAGGTTTG
CTCCCCTCTAGAATAATTCTAGAATGGTGAATTGGTGGTATCTGTATAGGGATAATTGTA
ATTATTTCTAGCTATTAGTCCACAATAGTATAGCATTATTTTGCCGGGAAATAATTTCTA
GCCTAGTTGATGATGCATTGCCTTCATATATATCGGCAAGTATATATCGATTGTAACACT
TGGGGATTTGCCAATATATCATTGTTATATATGGTGATGCAGTCGTAGAGTGCTGAAGTC
CATAGTCAGTGGGTAATTCCAGGTTTGGCCAACTTGTCCTGCTAATTTGCACTAGTTCAT
ACTGAAATATGTAAATGCTAATTGGTCCACTTTCTAATTAGTATCTAAGAGTTTGGCCAA
CTTGTTTTGCAACGAAGGTTCAAACTGAAATGGCCCAACATTTCAAATTTTCAACATTGG
GAATTTGGTCAACATGTTATGCTTCATGGTGTAGATTCATTTTGAAATTTGTAATAATGC
ATACCCTTGTTCCAGCAATCTAGTTAGTCTAGTACAAAAAGATGAGTGGCCAATCTGTAC
TCTCTAATTAGCAAGCATATAACAGATCAGAAAAGCGGTGCAGAGCACTTAATCCGGCTC
ACAAAATTAATGCCCGCTCTCCCAGGCCCGGCACATACAAACTCCAGACTGATCAATAGT
CTACGAAGCTTCATTAATTCGTTACATAACTCCACATCCAAAACTGGCAAGAGATTGAAA
ATAACATTGCTAGCTACAACCGCAATTGGAGAATGCTAATTCTAATGAACGATCTGAATC
TCATCAACCAATCAACACATCCTGTCTGTTGTTGCAGAGCCACATGCTTTGATTTTAGCA
GGAAGCCCTTTCTGCTTAATTTTCCAGCAGGCTATGATATCTCTCTATCTTACATCACTT
GTGCTTGCCATTTTTCGTCCAGTTATCACCATTCAAGCTTGGGTCCGTTTGGTAGAAGAC
AACATCTCCAACATCACTTACGAAGTGATCGGCTCTCAAGCTCCTGAGGAGGACATGGAA
GAGGTGAAGTGGCAGTGGACCCGACTTCTCTGGCTCGCGGTAATATCTTCCCAGCACTGG
CCTTGCTGCCTTGGTCTGTTTTTTGTTCATAAAATAAGGAGAAAGCCGTGGTTTCAGTAC
CCAGTACTCAGCATTAGTAGGTAACTGCACATATATATTCAGCATAGTAGTAGTAGTAGT
AGTAGTAGTAGTGCGCTTACCGCTTCTACTAGGTGGTAGTGAGGTATTTGAGGGAAGAGG
TGGTGGATGACATGAGTGCCAATGTCATGGTGGATGTTGTTGATCCATCCATAGTCCCGG
TCCACAGTCGTCAGGCCACCACGGAGGTAGCTCCATTCCTGCAATTATGATTACAGAGGG
TATATATTTAGTTGTCGACAAATGAACATTGAGTGCTGGTAAAATAGTAAAACCACTCAT
CCGTAGGGGGAAAAATTCTAGTTTAACACTAAAAAAACAGCATTACAAACAAGTTTATGT
AGCGTAATTATTTTAAACTCTGATATCATAGTAGCTAAGATGTTCAGAAGATGAGGTAAT
CTATTTTTACTACTCCATGTCGTGACAAATAGGCTGCTAACTCATGAACTGTGCGTAGAA
GATGGATGTTTTTCATACATATACTTGTAATTAACTGATCTATTTTGCTCAAAATAACAA
TGTTCAATATAGCAAGTACCTCGCCGCGATACCAAGGGAGGTCCTGGTGACCATGGTGGT
GAAGGTACGTTACCAAATCGAGCCACATCACAAACACCTGTTTTATATGATACACATCGG
ATGATACAACAGTAAGTTGTCCAGTCCTAGTGGCTTGGAAGCAAGCAGTACTAAGAAAAC
CGTTAGCAGTGGCTTACAGCATATGGAACCCCGTAGAGCTTGAGCACTGGCACCGGTCCG
AACACACACGCCATGGCGATGAGCAGCGCGATCATCGTGAACCAGCAAGTGGTGGAGACA
ATCACGTCACGCCTCTCCTTGGGGCTGAACAAATCGCTGCTTGGGTTGAAATGCGAGCCG
TTCTTGCCCGGGCTTCTGTACCACTGCAAGTGTTGAGCCATTGGAGAAGGAAGATGGAGT
CAGTGCAGTTTTGAGCTGAGACTCGGGGATGCAGAGAAAAAGATTCTTACAAGGTAGACA
GGGAAAGCCAGGAGTGGATATGGCAATGAGAAGCGTAGCTTCTTGGTGCTTGGTTCCATC
TCCTTGTACACATTCTCGGTAATCTGCTCAATTCAGTTGCATCCACGTCAGTGATAACCA
TCTTGGTTAAAATCGCAATAAACTGATGTATCGCCACGACAAGCAGCTAAGCTTGACTGA
AAAGGGCAAGGCCTGCTGGTCTATTACGAAAATGACAGCCAGGCAATCGACATGAAAGGG
ACCTTTGCATTATGAAATGGTCTATTTTGGTGGCTGGTGGGTGACTAAGCAAAGCAAAGC
CAAAGCCAAGGTAAGGTAAGGTTCGATGCGCATCTTTGCTGATATACGGCGATCAACTTA
GCAGGCAGCAGCAGAATGCAGATCTGATCACGCGACAGACATGATGAGTAGATCTACTTG
CAGCTCGTGTTTGGCTGGTAATAGTGTCTAGGAAAGGACGGACCACATGTCGCTAGCTAG
CTTTTGCTTGGATGGATGGATCTTTAGGGGCGGTTTAGTTTGGCAGCCTAATCACATAGA
GTAAGTATATACTCTACTAGTACCAGTATTCCCTCCCTTTCCTGCTCCACTGCATGTGCA
CTCTGCATCTCAGGCTGAGCTGAAAGCAATGCTTGCTTGTCCTTTTTCACCCTTCACCTC
AAATCTGCCAAACTCTCTCACAAACCTTTTACTACTGTACCTACTACTCCCTCCGTTTTT
AAATATAATGACTTATATTTAGGCTTATATTTAAGAACGGAGGGAGTAGTAGAATGTATA
TATATTATGAATAATTCAATACCCTAGCCTACAAATATCTGTCAAATGGTTGAGCAGCTC
TGAATCTGAATTGCAATAATGTTAGCGGGTAGTGTTTTGTACGATGAGGGTACTACTAAC
CGGGTGCCATGACTCGTCCTTGTCGATGTGGCCATGGTTCTGATGGTGCGTCCTGTGGCT
GATCCTCCTGAATTATGCCATAACAAGCATAAATGGTCAATCAGCCAAAGCTAACTACAG
CAATTACTAGTACAAGAAAATCATTGCTGCCCGGCAAAAATAATAAATTGATTAATTGCT
GCACAAGAAAATGCCTCAAGAATATAAATAAATAAATTGCTGCACAAGAAAATGCAGAAC
CTTGCGAAATAAAGTAAAATTCAGAATCTTGCATGGCATGCACGACGCATGGCTTGTGTC
CATCGTTTTCGTCTCCGTGTGGGGTGTAATTTTCAATGTGGACGACGTAGGAGACTGTGC
ACTCGTGTTAAACAACTCAAACAGTTGTCGAGAGATAGAGTATTTCTCTGAACATTTTCT
TTTCTTTAATAATAATATATAATAATAGGGGGAGAAGCTCTGTTTCGCTTCTTGATTGCA
TCGGTTTGCTCCAAATTTTAGCTCCTTTTCATGATTATTTCTTTGTTTCCTAAATAAACC
CATGATAGAAAATTGCAGCCCATTTCGTAGAGTTTCAGAATGTGTATCAAACTGTATCAC
TTCTGTTCCAAATTTGCAGCGTTTGTGCTCCCAATCTGTGCCGGTTCAGCGTTTGGGTAC
ACATACTAAAGTGTCTGTATTTATGTTAAGCGGAGAAAAATCGAAAGATGCTAACCATCC
GTTGTATGGGACAAGGATGAAGGTGTGCAGCAGGTGGCCGACGACGCTGTTGAGCGTCAA
GCTGTCCGAGAAGCTCCCGTGACCACTGCATCACAAGAGGAATAATTATTACTGCGTCCC
AGTAGACAGTAGTAATATACTACTCCTACGTGTGCATCGAACACAGATGCAGCATTGCCC
TCGGACGGCGACGATCTGGTTAATTGATGGATCGATTGCGGCGGCCGGGCGAAGGAAGAA
GCGCGTACCAGTCGTGGCCGAGGACGAAGAGCGCCCAGAACATGGTGCCCTGCGCTGCCC
AGTAGAGCGGCCACACGGCCCAGCTG