| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
 |
No map location | No map location |
Predicted Genes from contig_244128
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_34538 |
1 |
977 bp |
MLOC_34538.1 |
Available |
Available |
LOC_Os01g10470.1, FRAME:+3, EVALUE:1e-25, 13101.m01132 protein RALFL17 - Rapid ALkalinization Factor RALF family protein precursor, expressed |
CDS Structure of MLOC_34538
Contig Sequence (7077 bp)
>contig_244128 7077 assembly3_WGSMorex_rbca.fasta
TTGGACCGGTAGCAGTGTCGAGCTGTTCTTCATCAGTTNNNNNNNNNNNNNNTGAAGAAA
AGGAGTTGTCTTCAAGGTATGGAACTGGAATGGGTCTGAACTTCTTCTTGGGAGGCCNNN
NNNNNNNNNNNNNNNNNNNNNNNTCCATTTCTTCAAGCTCAGTCCGAGCATGAACTGAGG
GTCAAAGCTACGTGCGAGCGGCGGTGTTGTGGTCCGGTGGGCGGAGAATAATAGGCTCAA
GAATTACAAACTAGAACCAAAGTCAACAACCGGGCGTGAACTGCGGGTCTAAACTTTTTG
GAGCTGGATCTATTCAGGCCTATAACTGACGTTACCAAACCATTTGCTATAAGAAACCAA
ACTGAACCAAAATCTTTGGAGAATCAACCTATTAGCACCTTAACCAAGTGAAACTGTCAG
CAAAAACCAAATCGATACATTCGGTTAATCCAAAACCATTCCCAGATTTACGCATGGACA
TGTTTTCTAGTAACTGCCGCTGGTCAGGAGGCAGAGGGAACTATATCTAGCCATGAAGAG
GATATGTTGTCGCTTGGGAAGAGGCCGGCGGTGGACTCAGCTACCCTGGCCTTGATAAAA
GTTTCATCATCCAGTAACAGTGGAGCCATAGTTCCTACGGGCAACACAACTGTCATGGTG
GACCAGTTTGAGGCAACACGGGATCAGGAAATGATAAATCTGATTGATACACCACAAAGA
AATGCCAATCAGAAAAAACTGAGGAATGACGATGGTGTGGCAGTGGATAGTTCTTCTTCA
AATGATTTGGTGGCCTCCTCAGTGGAGGACCGCCATTCCCAATGAATCTACTAAGTTCGT
GATATTGCGGCACTGGTACACTCGCATTGCCCAATGTTCAAGTTTTTACGTGAAACAAGA
CAGAAATCAAGTAGAATGAAGACGATTAGAGGTCGTTTGGGCCTTCAAGGTTTCGAACGA
GTTGATAGTAATGGGCTTAGCGAAGGTTTAGTGCTGTATTGGCATGAGTCATACCAGGTT
TCAGTACTCGGGACTGATGATCACTTCATTGATATCTCGATTACCTCCCCTAGGAATGTT
CAGTGGAGACTAACTGTTGTGCATGGAGAGCCTCGAGTTGAAAATAGGCACTTTATGTGG
TCTAAGATTCAAGCTTTGAAGCAAGTTTCGGACTTGCCATGGCTAGTTATTGGTGATTTT
AATGAGGCGCTCTGGAGCTTTGAACATATGTCTCTGAGTCCCTGACCTGAAGCTTAGATG
GCGGCTTCTCGAGCTGTGCTTATGATGTGTGAATTGATGGACTTAGGCTTCACTGGAGTT
CCCTACACATATGATAATATGTGAGCGGCTGCCGATAATGTACGTGTGCGTCTAGACCAT
GCAGTTGCTACAAATGACTGGAGGAATTTGTTTGCTTTCTCCATGGTTCATCACCTTGCC
TCCTTCTGTTCGGATCATCTGCCCCTTCTCTTGAAATTATCTGCAGAACAGGAGAATCCA
ATATCAAAAGCAAGGAGATATGAGATCTTTTGGGAAAGGGATGATGGGCTCCCGGACTTT
ATAAGAAGTACATGGGATGCCTTGGGCACCATGGATAACCCGGGCAAGGTTAATGCGGCT
CTAAGATCCACCATGGTTGCTCTCAAATCATGGAGCAATAGAAGGTTTGGAAATGTCACT
AGGGAGATTAAGAAGTCACGCTCTCTTCTAGAGGAATCGATGAGGATGAATGCTGATAGA
CAAGAGATACAGAGAGTGTTTGACAAACTTAATGAACTGCTTTGTAAAGAAGAAATGTTA
TGGCTTCAACGCTCGAGGATAATGTGGCTCAAGGAAGGAGATAGGAACACAAAGTTTTTC
CATAGCAAGTTAGTTTGGAGAGCAAGGAATAATAAAATTAGAGAGCTGCATTACAGTAAT
TGTACTGTTTTTCAAGCTGAAGATACTATGGGTAACATGACCACTTCATATTTTAAAAAT
ATCTTCATAGCAGACCCAAGATTAAATGCAGCTGGAGTTGTGGACTTGTGCCGCACATTG
ATCACTGATGCAGATAATGAGAAATTGTGTGCAGAATTTTCAGAGAAGGAGATTTCGGAT
GCTCTTTTTCAAATAGGACCGTTGCAGGCACCTGGGCCGGACGGGTTTCCAGCGAGATTT
TTTCAGCGTAATTGGGATGTAGTGAAGGAAAATATTGTAAAGGCAGTAAAGGAGTTCTTC
AGATCGGGTGTGATGCCGGAAGGGGTGAATGACACATCTATTGTCTTAATCCCTAAAGTT
GCTAATCGCACAAAACTCTCCCAATTCAGACCCATTTGGTTATGTAACGTGACTTAGAAG
GTGGTGTCTAAGTGTGTGGTGAACAGACTAAGGCCTCTGTTGGATGATATTATTTCACCT
GAATAGAGTGCCTTTGTGTCTGGCAGGATGATAATTGATAATGCACTAATTGCCTTTGAG
TGCATTTATTATATCAAACAAGAGAAAGATCCAACAAAAAGCTTCTCTGCATACAAACTT
GATGTGTCAAAAGCATATGATCAGGTAGATTGGAACTTCTTGGGACAAGTGACGCAAAAG
CTGGGTTTTGATCATCGATGGGTTGACTGGATTATGACTTGTGTCACATCGGTGAGATAT
TTAGTAAGATTTAATGGAACCCTCTTGGATTCATTTGCACCGTCGTGTTGTCTACGGGAA
GGTGATCCCCTCTCCCCTTTCTTGTTTCTGTTTGTTGATGTTCGGCTCTCTGCAATTCTT
TGACAACGTGTGGATGTGGGATCGATGATACCTGCAAAGTTCTACCGGTGTGCCCCCGGT
ATCTCTCATCTTGTGTTTGCGGATGACACGCTCCTTTTCTTTGAGGCTTCAAGAGCTCAA
GCTGAACAAGTTAAAGATTGTCTTGATCTTTATGCAAATGCTACTGGCCAACTTCTTAAC
TATGATAAATGCTCAATTATGTTTGGAGAATCATGCCCAGCTAATGCACACGAGGACGTT
CGGGATGTACTGAATGTTTCTGTTGCAGGATTTGAAGAGAAATACCTAGGGTTGCCAACC
CCTAATGGGAGAATGACGAAATGCCGGTTTCAAAACCTACAAGCTCAACTTATGAAGAGA
CTAGTTCAATGGGGTGATGGGCATCTAGACCAACCAGGCAGGGAAGTTCTCATCAAGTCG
GTTGCCGAGGCACTACGAGTTTTCATCATGTTAGTTTTTAAGCTGCCCTTTTCGGACTGT
GATGATCTCACGGAGATTGTCAGAAATTTTTATTGGGATCGACCAAAGGGAACCGTAAAA
TACACTCGAAATCTTGGCAAAAGTTGCAGCGACCGAAGAGCAAGGGTGGTGCCGGATTTA
GAGACTACCGCTTGTTTAACCATGCTCTACTGGCTAGGGAGGCGTGAGATTGTTGACTCG
TCCTGCCAGCTTGTGTGCAAGATTTCTCAAGAGCAAATACTACCCCAATGGTAAACTTGA
GGACACAGTCTTCTCAAGAAATGCCTCCTCAACTTGGACTGCAATCAGTCATGGCCTAGT
TCTTCTTAAGAAAGGGATAATATGGAGAGTAGGGAATGGGAACAACATCATAGTTTGGTG
GGACGCTTGGATCCCTAGACCTTTCTCCTACAGACCCATATCAGCTCAAGGTACTTGCAG
AAATCGATATGTGTCACAATTGCTACAACATAATGGTGCATGGAATTATAATTTGCTTCA
AGAAGCATTTCTGCTGTGTGATGTTCAGGAGATTTTGAAAATTCGAACTTCACCTAGGCT
GGAGGAGGACGTGTTGGCATGGGGACCGGCGAAATCTGGACTCTTCTATGTCAAATCAGC
ATATGAGTTAGCTTTTGAGGAAACTTACCGAACAACTGCGGAATCATCAAGTATTGCTCC
GGATGGACGTCGCGCATGCTGGAAGCTTATTTGGGGAAGTTTTGTGCTGCCTAAGGTCAA
AAACTTTGCATGATGCATTTCGGTGAACTCCCTTCCAACTTGGAAACGGCTCGTTTATGC
CCAATCTGCGAGAGGGAAGAGGAAGACATTTTCCATGCTCTCTGTAAGTGCCCTCTAGCA
GTGCAACACTTGGACTGTATGGCTTCTGTTTGGCGACTGCCGAAGCATGAGGATTTAAAG
AATTCAGGTACTGAATGGCTGCTGGAAGCACTTCACTCTCTATGTGTGATAGAGAGAGGT
ATGCTACTGATGTCCTTATGGATGGTGTGGCACAACCGGAATGAGGTTACACACAACAAA
GAACCACCTCCGATGGAGGCATCTAAACGCTTTTTGATGGGATACTTGGAGTCACTTCTA
TCACTAAAATATTCAGAGGAGGAATTGCTGAAGGGGAAACAAGTGGTCGCTTACGATAAT
CTTCCTATATCACGGGTGACACCGTCTGCAACTCCAAACACTGTGTGGGTTTTGCCTCTG
GAGGGCCGGGCCAAGCTCAACATCGATGACTCTTGGACAGTCGATGGGAGTGCAGGTGCC
GGTATGGTTCTTCGAGACAGCAAGGGACAAATCATATATACATCATACAGTGAGCTCTTT
TCCTGCAGAAATGCACTGGAGGTTGAACTAGGCGCATGTATGGAGGGTCTTTCGCTAGCT
ATTCAGAGAACGAAACTACCTATTCAGGTAGAGATTGACTCATGAGAGGCTTTGAACATG
ATCATGAGTGATTCAATTGATAGATCAGTCTTCTCCTCACTGATGAAAGAAATCAAGCTT
CTAAGGAATCTTCATAGTACTACTTTTAGCAATGTTCATTGTAGTCAAAATAATGTAAGC
GATTTATTGGCCAAGTTTGCTAGATCGAAGAGTAGAACAGTCTGGCTCAACTCTGAATTA
CCAGAGATCATTGAACTTTGTAACGCAGATTGTGGTCTTTCCACTTGACTAATACAAAGT
TTCATTAAAAATATATATTTTCTAGTAACCCCTTAAAGAAAGAATGGTAGTCATGGGTCA
AGGCCCGTTGTGACAAGAATCCACTTCAACTTGACGTAATGCGTCGGACAGGTGGACGAA
ATGCGTGTAGGTGTCAGCATGACGATCTCAATTGCACCTAAAATTAGCACAGGTGAGGCG
TGTGTGATGGTTCCGATGGGTCGGGGTTCCGAGACGGAGGCCGCAACGTGCGGCGGCACC
AGCCAAGCAGACGCGCGGCCGCCCTGCTTTCTCTCCCGTCCAGCTCCCCCCTCTCCAAAT
CCTCTCCCCCGCGTCTCCTCTTCCTCTCCCCCCATCCCCTTCAAAGAGAGAACAAGGCAT
GGAGGGATCCACCCTAGCCGCAGACCCACAAACCCCAAGAAACCAGCAACCAGACTGAAG
ACCGACATGGCCCGTATCGGCGTCGCAGTGCTCGCGCTCCTGGCGGCCGCCGCGGCGGTC
GCCTGCCTGCCGGCCCCGGCCTCCGCGGGCGAGCAGGACTCCATGCTCCTGTCGCGCACG
GCTACCTGCGACGGGGCCGTCGGGGAGTGCGGCGTAGACGAGGACGAGGAGATGGGGACG
GGCGCCGCCGGCACCGGCGAGGCCCTGCGCCGGTCGCTGGCGCGGAAGCCGACGGCCAGG
TACATCAGCTACGCGGCGCTGCGCGCCGACCAGATCCCCTGCAATAAGCGCGACAAGTCC
TACTACACCAACTGCGGCTCCATGCAGCAGATGAACCCCTACACGCGCGGCTGCTCCGCC
ATCACGCGCTGCGCCCGCAACATGGTCTGATCGCGTCCTACGCATCCCGGCCTCGTCCAT
CTCGCGCACGTACGGCAGACCATCGGCGGAGAGGAGGTGTGGCCGTGTGAGCGCCTAATT
AAGCACTCTATGCGTTTCTGCTGCTACAACATTGATGATCCAACAAAATTAACGACTGTT
ATCGTTTTCGTTTGTCACTAGCTTCTATGTACCCACCGTGTTCCTGCTATTGCCATGTGT
ATGCCAATTTATTCTTTTGAAAAATGTTTGTGTATTTGAAGAAGAACAGAGTTCCATTTT
CCCGTCCATATTTTGATATGCTTGTAATTTTCATGAACAGGGTTGTCATGTTGAAAAACG
GGTTAGAATTTGTGAATACATTATATTTACTCGGTTTAATTATTGAAATTCAGTATACGG
CGGCATATAACAACACTTACATGGTTACCGTTTCCTTGTAGATTTTTTACGAAACCGTTT
TCTTATAGATATAGTAATAATTTATTGTACACAACTATTTGCGAAACCCATTTCCATCAT
GGTGATGACCTAATATACTCCTTCTGTAAACTAATATAAGTGTGTTTAGATTATTAAAAT
AGTATTTTACATGTTTTTATATTAGTTCAAGTTTCTTTTTTGAAAAAAGACAAGGAGGAA
TGGAGCCCCGGACTCTCCATCAAACTGATTCATGCAATCATATTATTAAAAAAAGTATGA
TAATAAAATCTTAGATACATAATTGGCTCACAATCTAAACACAAAAAGTAAAATGTAAAG
AAGACATGCCACATCTGGCGAGATAAAAAACAGACTACAATGTCTATACACCTAGCCTAT
TATTAGCTCCTCATCTCTACTATTAAAGCAGGATGTGCCGTCGTCGTGATGGTTCGACCT
CCATCCTCCTCCCCGCCATCGCCAAAAAAATAGCCACGGTCAGCCCTCATTCCCTCGTAC
GATCCCCTCCCCCATTAGGAAAAAAACCACTAATTATCCTACCCGCTAAAAAAGCAGAAA
AAAGAAAGAAATAACCGCAAGCCACGAAGGCACGATCCCATCTACATCGCGTCCTCTGCT
ACCCCGCCCCCATCCACACACCCTCGCTCCTGATCCCATCTCTCTCCCGAGAAATCTCAC
CGGCCCAAGCACTCTGAGGTCGGCGCCCTGCTGGGTTGCTGTGACGGGCTGTGTTTTCTT
TGTGTGGAACCCGGTGACCAGGCTGGCGGCTAGGTTGGACTTCAAGCCGCCTTCTTTCCC
CGACTTGACCAGGCTGTGCGGCTTCAACCGCCATAGCCCGTCCGGCGAGCTTCGACTTCT
CGTTCTCGCCAATGAACTAGAGCCTGGCTTGGCGACGCAGTACATTTACTCGGTCGC
