morexGenes - Barley RNA-seq Database

Contig contig_244126
Source Contig contig_244126
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_244126 (9367 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_244126

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_34537	1	3924 bp	MLOC_34537.1	Available	Available	LOC_Os03g18380.3, FRAME:-3, EVALUE:0.0, 13103.m02203 protein ubiquitin-activating enzyme, putative, expressed
MLOC_34539	11	3887 bp	MLOC_34539.4	Available	Available	LOC_Os01g18850.4, FRAME:-2, EVALUE:0.0, 13101.m02045 protein OsSPL1 - SBP-box gene family member, expressed
CDS Structure of MLOC_34537

CDS Structure of MLOC_34539

Contig Sequence (9367 bp)

>contig_244126 9367 assembly3_WGSMorex_rbca.fasta
TAATTCATGATAACATACATTGTCTCTTGGACTAATAGTTTCATCTAGTTTATTTCAGAT
GAAGTCCACAGAGAAAGTTGGCTGGATTGTGAGGAGAAGCCCCAATTAAGGAGAAGAATA
GGATAGGCCAAGCATCAAGCTTCAGGACTATACATTTTGCTTTTTATGTGAGAAATCAAA
ATTGAGTCCATAGAAAAGCCAATAATATTAAAAGGGGATGAGGTATCCATGATGATCTGG
TTGCTCGAGTGCTTAGATTTAGCCACCAAAAACCCACATGAAATTCTACAATAAATATTA
TGTCTAAAGCCTAAACACTCAAATACGGTGCCACCAATATTTCCAAATGGGATAATTAAT
TTTGTGCCCTTAGTTGTGTCCCCCTCGGCAGGTTTGCCCCTAGTTTCGGAAAACCCTCAT
TCTTGCCCAACTCACTTTGCTTTTCTTATGGTTTTTCCCTTCATGCACGGCTCCATCTAG
TCAGCGTCCTTTGACCGCTATCGTCGCTAGATTTTGGGCACAGGTGGCCTCGGCCAGATC
TAACCAACATGCTCTCTCTCTCTCTCTCTCNNNNNNNNNNNNNCCCTCCCTCTCTCTCTC
TCCCTCAAAAGAGAAGAACACAAAGTAGGAGTAGGGTTTTACACCGCAATATGGCACCAA
CCTGGGTAAACTCCAACGTCGCTCGGGTATGCAACGTGTATGGATTTATCATAGTCGAGA
TTATAGGTGCATCTAGCTCTCAAGTGTTCAAATCGGGCAGCTCCCAAGTGTTCGAGTCGA
GTTCTTAAGAGGTTTTTCCGTAGGCACAAAACCGATCTCCAATAGTCACAAGGTGTGATG
TTTGTAATGCGTAGACAAAATCATGCAATATGAAAACTACAGTAATTCAGAGAAAGAGAG
GACAAAGGTGTGAAAGAACACCTGCATCCAAAAGACCTGCTAGTAGTACAAGGGGTAGGA
GAAGGGGTAGGCCATCTACATCTAATGGACAACCTAAAAAAGGCGGCCACTGCTAGCACC
TCCTGAGGATACATGACAGGCAGGAACAAGACCATGACCTAGGTAGGGATGCTTTGACAA
GAACTCCAATCCAGAACAGGGATCGTCGAGAAGTTAAAACTCCAACGAATGCTTCACAAT
CTCGATCCCATCAGCCTAAAACAAAGGTCAAAAAATTCCCCCAAATGACACAAACCCTAG
AAAACTAGATTGAACGGGTCGGGGTGGAGGAGCACGAAATCCAACACATTACTTACTTCT
CCGATCGCCAATGAAAACTCCAACGTCGCTCGGGTATGCAACGTGTATGGCTTTATCATA
GTCGAGATTATATGTGCATCCAGCTCTCAAGTGTTCAAATCGAGCAGCTCCCAAGTCATC
GAATCGAGTTCTTAAGAGGTTTTTCCATAGGCACAAAACCGATCTCCAACAGTCACAAGG
GATATACAAGGGATATCCCATGATGCATGCTTTTTTGGATGATGTGATGCTAGTCAATAA
TAGTCGGACAGACGTTAATAGAGAGTTAAAACTATGAAGACAAACCTTGGAATCGGAAGT
TTTTAGACATAATAAAACACCGTTTGATATTTAAAATCAATGATTCAGAAGAATGAAGAT
ATCAATGAAGATGTAAACCATCAAATTGAAACCGAATAATTGAAGCCGAATGTATGAAGT
GGCACCAAGCTGCCACAAAAGCTAGGCAAATTTTACAGGATATATAGAAATAGAATACAT
CATGGAAACTAGCAGGTTGAACTGTGTCACGAGAAAGTGATGATCACAATGAGGTACAAA
GTAAACGACAATTAGTGACCGGAACTAATCATCAAGCAATCCCAAAAATATCATCAAACA
ATCCCAAAATATCAATCTAATGCTACGCTGTGGATAACAGGCTATGGCATTCATCAAAAC
ATCAGACAGCATCGCACACCTTCAAATAGTTGGCATGCAACAACAGAGCCGAAGGACCCA
CACAAAACGCTAGGGAGATGGACGCTAACACCATCAGCGATCACTAGGCTACCAATGCAT
AAGAAAACCAAACCGGCTAAGAAGGGTTTTGGAATGTTTCAAACATCTCTCCACAGGAAT
TCTTTGCACAGTCTTCATCCATCCTCACAATAGAGAGAAGCACCTGCCTATCGGAAGTAA
ATGGAGATAAGAGGAATATCGATGTCGTTTCCGTCGTCATCCTCGCAAGCCACAACAACA
TCAAAGTGCTTCCTGTATGCTGGAACATCTACCTTAGCCACCTCCTGGGCGACATCCACC
ATCTTCCTCTTCAGTCGATCCTTGTGCCTCGGGAACATGGTGTTGTACAGCAAGGATGTG
CCACAGGAGACGCTGTAAGCAGTCAGGCCCTTGTCGCTTAACCACTTCAGGAGTTCTGCG
ACAGTAATGTTGCCCTTGATAGACCATCGGTCCCACACTGTCCATCTCATGTCTTGATGC
TTCATCTCCTTGGGCGGAACAGGTTCAGCCATAGAGAACATTGGTAGTGCCAGGTTGGCA
AATGTATTGCGGTAGTCTTCAACTGGGTGGTCACCTGCAAGAACCTTGTAAAGCTCAAGG
CACACAAGACCTGTGGCCATGGCTGTCGTAGTTGCAATAGCTGGAATGATTCTTCCTGCA
ATGAACTTCGCCTTCAGCTTGTCAACCTCTTGAATACCATAGTTTCTCGCACGCATATTA
GCAAGACCAGCTATCAAGTCCATATGGAAATTTGTATCATCATCCTGCAAAAGAAACATG
TGGTGGGTTAACCAGAACTAGAGAAGAAAGAGCATCAGCCATAAATATTTGATTATTTCT
GTCCTTTTACAGTGGTATGTCAGAAGATATTTTGAGAACTGAAATTAAACAAATGCCCAT
AAGTTATAGTTGCATGCCTCATACAAAAACAAGGAGGTGAGTTATAAAGAATATAATCAA
CAACAGCTATTTGACACAGGCAATGACAGTATTGAAAACATCTTTACTGTACCAGCACAT
AAAACAGAAGCGCACACAAAAAGAATATACACCAACATGGAATGATAAGCGGAGAGGTGC
ACACTTTTTCTCAAAGAACTGTGAAGTTACTTATCCTCATTGTATCTGGGCAGAAGTGGA
GAATAGATTACTACTAGCAACAAGGGGGGAAAACGGATACTAGCAACTAAGTTCTATAAC
TCAATGCATAACAGAAAGAAATGTGACCGAATCACATAATCCCTTTTGATGTTTTTGCTT
ACCAAATATGCACCTACGCACTAGTGACGTATGTTTGCTTTCTAGTGTGAAACGAGTAAG
GACGTTCTTAAACAGACAGGGCAAGGGAAAAAAGAGTCTTATTCTAACACATCAGAAGTA
GTTAAGAAGAGGCTGACCTTCTCAAACTGAATAGGCTTCATTTGGAATCCTGAAGGTAGT
TTCTTGGCACATGCTTCCAGCTTGGTTAAAAGGTCTTCGATAACAGCAGCATCGTCAACT
GAGGCACTGGAGAGGTCAGTAGCCTTCTCATCTGTTTCAATCTTAACCCCACTCTTTGGC
TCAAATTCAGGCACTGCAACCTTACTTACTACATCAGCCAGATTACCCATGTTCTTCGCC
CAGTCAGGTATGGGGATCCCGAAAGACACGGCTCTCAATATGGATGCAGCCAGTATAAAT
TGAATGTGAGATGAATCAACAGCTGAGAATTGCACCGGGTGAGGGAAACGCTTAGGGGCA
GACCAGAAAGGAGCACCAGTGCTAGTGCCAGCATCTTCAGGAAATGTGAATGTTAGCTGC
TTCACACGATTAGAGAAGTAATCTTCAAACCTGGCAAAAGAAAAGAGATGTTATTAAATG
GCATCTGGAGCACAAAAAACATTGTCCTGTTTATTGGCAATATAATCAAAATGAAACCAT
TTTAACTTCAAATAGCTAAGACGAAAAGAAAGTGGAAGAAAGCCAATAACAAATTGTTGA
ATTCAAAAGGGGCGTGTAGATATATCGTACTTTAGTCTTGCCCAGGCTATGCAGTCTTCA
AATTTATCACATCGCTCTTTGTCAAGGCACTCACGTACACGCTCCAACAACTCCCTGGCT
TGAGCATCACCTGCCTTTCTCATAGCAGCAGCATATTCAGCAGGATTAGACATAAATGAG
TTCACTTCATTTGGAGCTTTCTCTAGCAGACCCTCAAACTCTGAGCGAGCCCATGTTAGA
CAATGGTCAATATTGTGCGGAAAAGAATGAACTGTGCACATTGGTGCCTGTTTCTCAGGA
GGATCTCTTGAAGCTCCATAGTTTTCAGTAAGGTGAGGAATCACCATCTGTGTATTACAT
TTCGGACCCAGCGTTCCAGATTCCAAGAGTGGTTTCTGGAAGTACAGGCATCGCATGTCC
ATGTACATCCTAGCATTGACGTTATCAAGTGCATTGATGACAGCATCAAGGCCCTCCCAG
AATGCATCATTGAAAACATGTTCAGTCTCTGGGCAGGCACGATTCTGAAGAGCATCAATA
TGGAAGCTGGAGTTGATAGCACTAGCAGCTGTAGCAGCTACTGTAGATTTTGCCTGTCCA
ATGTTCCAATCACGAAACAGGAATTGCCGACTCAAGTTGCTTTTCTCAATGACATCATCA
TCTGTTATAGTTAACTTCCCTTTACGGCCACAAGAAACCCCCATTAAAGCAAAGTTCTTC
AAGAATTCACATCCAAGAGCACCAGATCCCACAACAAAAATATTAGAGTCTCGCATCTTC
TTCTGAAGCTTAGAACCAAAAACAGAAATCTGAGCATCGTAGCGGCTATTCACTGGCTTC
AAGTCTTTAGGGTCCAATGCATAGGTTGGCAGAGATTCTAACGAGTCAAAATAGAAGAAC
TGGCAAAAAAGGAAAAGAAAATCAGACAAAAACCAACAGATTATTATCATAAACATAAAT
ATTTGATAGTTCATGACACACACCTGGTACTGAGGATGAAATTTCCCAGAACAAGCCTTC
ACAACTTCTTGACCAACAATACCACCAAACATTGCAGCCATTGGGTTCAGAACAGCTCTA
GAACCACTTGCAAAATGTTGCAGCAGCTTCTCATCAAGTTCATCCATCTTGTAATCAATT
GCGGCCTCGTTAATAGAAGCAGTAAACTCCACAAATTTTCGAGCATCCTGGTCACAACCA
GCAACAGGGAAGCGCCCAAACTTTTCTCTGAACTTATCCAAGGCTAAAAATGCGAAGTGA
AGCAGCGGAGGACGCTGGTATTTTGAAAAATCACTCAAAAGGAAATTCCCTGGTTCTTTT
ATACATTCTCTCAGACTCTTGAACTCTAAGATCATTGGTTCTTTCACCTGTGTAACAATC
CCACCTTTTGCGTAAATGCCAAAGTTACGTGTATCCTCCTCGATGCAAAATGAAAATGGT
CTTGCGTCTACTATCTTCCTGGGCTTGCCATCATTCAATTCTGTCATCCCACTGACCTCT
GTGAAAACAACAAGATCACCATCTTGGAATTCAAGGCGCTCATCATCAACGCAGGAAACC
ATTGCTGGATTGTCATTGCTGATGGATGCAATTATACCAGTATGGGGATCTTCACCATCA
ACATCAAGAACAGTAAACTTAGGCCCAAAGTCACAAAACACGCTACCAAAAAGACCACAG
ACTTCTGTTTTGATGAATGGAATTGGAGGCTCGTGGCTACGACAGTAATCATTAAATTCA
ACCGCCTTGTCTAGACTTAAGTTGGTGAAAACAACAGACTGCAAATAAGAGGTACAATCA
GCATATAAGCGGGGAGGAGTACATGTTTGATAATAAAACACAAACACACCGCGACAAAAA
ACTCAGCAAATGGTGTCAACTAATTAGTGTGTGATGGTGACCAACTATGTAGCTTTAGTT
ATTCACATTAGCTTCAGTCACCAAGCTTACTAACTGCACAGCTGACATGCAGGTCACTTG
AAAGTACACTGCATATATAGATCGTCAATATATCAGCTATGACACATGTAGTGAAACAAA
TGAGTTCTCAGCTAAAGAAAAAGGGAGTTCTACAGGGTGTTATGAAAGAAATAGTTTGGC
ACTACTACGAGGAACAATTACTCATCAGTATATTGACATCAAATGCAGATTAAGGCCTGT
GCCAATGCAAGTTTCTTAGCGCGGTTTCATAGGCATTTTGCTTATGTGGCACTGTATTTA
ATGAAGAGAGATAGTGAGGTTGTATCTTAGCTAACATACAACCTTGACACGTGGCCATAG
GCAAAAAAGAGGTGCTAACCCAATCACATGCATGCATGAACCACAAAACATTAAATTTAG
ATACAACACATAAGATACAATGCATTGTACTAGTTGTTTCTTATGTTTTTATTACGCATA
TGATTACGTGCGAAGAGACGATGCATTGGCACAGGCCTAAGGTCCACACGAATTTACATA
TTACCATCCAAAACAGAAATTAGCTTAAACAGATAATAACATTCCAATTGATTTCAGGCA
TAGTTCAAAAAGGTAAAGTTATTTTATTAACCTTGATGGTCACTACTATTGAACAAGAAT
GGTGCTGACAAAATTTAACACATAGTACAGTTAACAGACCTGGAACTTAGAAAGGTGTTC
AGTAGTCAGTTCTTCCGTCAGAGCAGCTATAAGAACAGCATTGTTAAGTTCTTGCAGCTT
TTCAACACAAGCAGCAGCCCTGTTCTTCCCAATATCATCCTCGGATAGGAAGAAATTGCC
AGATAGGTCCCACATATCCACATTTTCTACATCATGTAGGGTGACAGATTTAACACCCGC
CAGAGCAAGATTCTTTGCTGTATGGAAGAATTATATTAGTTACAAACATGCAATCCACAC
GCATAGGACTATGATAATACCATACAAATATCAATAAGCAAACCATGCATTAGAATGTGT
GCACGGACAAACAGGAAGAAGGAATATAATTGATCATTAATGACCATATTAATTTGCCCA
ATGAGACATGAAAATGCTAGCTAAATAACTCAGATTCCTGGACTGAGCAGAAGAAGAAAG
GAAAATGGTTGCTAATTTATAACCATATCACTTGCCCAATTAGACATGAAAATGCTAGCG
ACATATCTCGTGTTCCTGGGCTGAGCAGGAGCAAGAAAGGGAAGAATTACAATCCACTAA
TTTTACCAACTCAGTATGATAACTACATTTCCCTCTTCCAGGAGGCTTATCTGCTTGTGT
GTTTCCTTTTCCAGGAGGCTCATCTGTTTGTGCAACTACCGCCTATCAAACCAGGGTACT
CAGATTATTTTGTGTCCTGTTGCCAGTGCTGCATAGCATAGCTCGGTTGCTACATGCAGC
ATGTGCCCCTCGGACATCTCAGGTTTGATTCCTCAGAATCGTTGGGTGCTCACTCCCCTC
TAAAAGGACTTGCAAGATATCCATGCCTAAAGTGCCAGGAAAAAAAAACATGCCGGGCTA
GATCATTCTAACACCCAAATCTGGTTTTGATAATGTCGGTCAGTCTGGTAAGTCAGAACT
AGTAACTGCATCTCCATAGACTATTACATTAAACAGTTTCACTAAGGCAACAAGCAGTTC
AGGGCTTTTGACAGTTTGCAAAACCAGTAATTCTATCAACTGTCTGTACCATTTTCTCGC
CTGTTTCTAGTGGCAATTACAAAAGCTACCAATGTAAACACGAAGTAGGATCACAAAACA
ATCAACAACATGTAGTAAATAGAAGTAGTCACCACTGTGTATAACAATAAAGACATGCCT
TGGGAATTCTAGGCAAAAATATATAAGCAAATCTGCATAATAAGCAGAAAAGGGGCATAT
TTGATTTGCATTTCTCTATGAAACACTACAAACTCGGGATGCAGCAAACAATCTGATGAT
CATAGCAGCATATGTCAGTAATTTAAGGCTTCACTCTGTTTGAACAAATAAGACATCAGA
TAACTATACAAAATGTATTTCTCTATCCAGCAACTCAGCCCTGTCTGCACATATATGGGG
AAAATCGAAGTAATCGCAGATCCATGTTTCTCAATCCAGCAACTAAGCAAGTAATCACAG
ATTCCAAATTACCAACAAATATTTAAGAGCAGCAAAACAGAACGCAACAGTAACGGCGCC
AGCGCGCCAAACATTAGATATCAATGTAGTACGTAGTAAATAAAGCACTAAATCACCTGT
ACTAAAATAAAGCACTAAATAAATTAAAGTAAATCACAAATCGAAGGAGGCACGTACCTG
TCTCAGCCCCAAGCCCGTTTAAGCCGGAGACGAGCACGTTGGACGCAAAGAGCAGCCGCA
TCGTCTCCCTCCCGTACACGGCGAGCTGCCTGCTGTGAAGGTCCTCATCGATCTCCGCCA
CCCCGTTCCCGTTACTTCCCCCGCCAACCGTCTCCCCGGCAACCATGGCCTCCGACCCCG
CCTCAGCCGCCGATTCCCCTACCCGAGCCTTCTTCGCCGCCGCGTCGCCGCTGTCCTCAG
CGCCGTCCGCTCTCTTCGTCGGAAGCATATAGCGCGGCCCCCTGCATCGCGCAGCATAAA
ACCAAATCAGACGCCAAAACCCGCACCCTAAAACCCCAGAAATGGCGATCGGAGCGCACG
GATCGAGGCATCGGAGCCGATCCGAATCGGCGGTGGCGGGACCTTACCGGTGCGGGCGAT
CGGAGTGGCGGCTAGGGTTCGCGCGGCGCCCGCGGCCTTGAGGACGGCGTGTCGCTTGTG
AGGCTACCTTCGGCTTGGGGGCGAAGCCGGTGGAATGGCGTATATATAGAAAGGGGCGGG
CGCGGTGGGGTTTTGCGGCAAGGCAAGGTGGTGGTGGTGTTGGATTGAGTCGCCGATGCG
GCGCGGTGGAGAGGCTTGGGGGTGGGGAGGGCAGAGGGCTTCCACGAATCTTGGCCGTTG
GTGTTTGGGATGGACAAGCCTGATAAGGCAGGCCAGGCCGGATGGGTCGCGCTTTGGTTC
GACTGGATGGCGAAGTGAAAGCATTGATTAAAAGCTAATTCAGCATTAAATTAAAACATT
ATGGAAATGTCCGTTACTCCCTCCAATTACAAACTTTACGAATTTTGACTTTAAAATACC
AAATGCATGACACTGGATACATCATCAATTATATTTTCATATTTTGTTGATATTGCTATC
AATTATTCGGGCACGGAGAATATTGATAGAAATCTCAATAGCGATTCTAAATATTGATAA
TACTAGTAAATGTGTCTGTGCGTTGCTACGAATGATGATGTAATTAAACGAATCGAACNN
NNGATGAAGTTAAATGGATGAATTAGAATGCATGAATAGTATCATGAGGTGACACTAAGA
CCTGCAAATTTTATTCAACGGGAGAAAAAAAACATTGCTCACCCCTAACCAATATATAAG
TGTAGCT