morexGenes - Barley RNA-seq Database

Contig contig_243953

Source Contig contig_243953

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_243953 (5592 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_243953

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_34456	10	3898 bp	MLOC_34456.1	Available	Available	LOC_Os03g56370.1, FRAME:+1, EVALUE:8e-173, 13103.m06148 protein methyltransferase, putative, expressed

CDS Structure of MLOC_34456

Contig Sequence (5592 bp)

>contig_243953 5592 assembly3_WGSMorex_rbca.fasta
CCGTCTCACCGGAGAGCCAGAAGCGGAGCCCGGCCGCCGCGCCGAGAGCTACGCCGCCCG
GGCGGCAGCAGCTGGTCGATCATGTCGTCCGGCGAGGAGAGGGCGGGCGCCAATGGCGAG
GGCGAGGGCGTGCTGGCGGCGGTGATGGAGCAGCTGGCGCCGGAGGGGGTGCGGGCGCTG
CACGCGCGGGTGGAGGCGGAGTGGGACCCCGTGCTGCAGAGCGCGTGCCAGGGGGGGGCC
GTGCGGGCGCTGTGGGCGAGCGCGGTGCGGGACCCGGCGGCCGGGGTGCTGGCCGGGGAG
CGGCACCTCAGGGGGCTCCACGAGAAGATGCGCCGCGACGAGCGCGCCGGCGCGCGGGAG
GTGCCCGGGGTCATGATCGCCGTGCGCACGCTCTGGTTCGACGCCCGCATCGAGGCCGCC
GTCGCCAGCCTCGGCGGCGCCGCGCAGGTCGTCCTCCTCGGCGCAGGTTCGTCACACGTA
GCACGTAGGAGTACACAAGTAACACGATCGACCTCGCTGCGCGTAGCTGCTGTGCACATG
GCATTTCCGTCGTGAAATGTGCTGCGAATTCAAATTTTGAAATGCATCTTTCGTATCACA
CGGACGCATGCTGCATGCATCGCACACAGGATCATGCCTTCTGCGTATTTACTCCCTCCA
TCAAAGTTTATAAGGAGTATTTGTAATATATGCCTCTTATTAAGTTGGTCAAATTAACGA
CCTAGATACACATGTCGGACTTATAAACTGAAACGGAGGGAGTATTTGTTTGTTTCATAA
TTGAATACTTATTCCACTGGTTTCAAACGCTTTTAACACTGGCATTTTCGTTATGGTGCT
TCTGTTTTTGCTTCCCAACACTGTAACTTGCATGTCTGGTTAATTTGATTTTTAAGTGAG
ACAAAAACAGTTTATTTCCGTCACATTGAAACCATGTTTCCATCAATTATACGAATTTAG
CTCAACTCATTCTTTTTAGAAATAAATAGCTTTCATTGCGAACGAAATTTGCTTTGGTTT
AGACCTTTTTTTCCGGCCGTAATGGGATATTTTGTTTAGAAATAGTCACGTTTTTTTATG
ACGACCAATAATTGCTTTGAATGAAATATAATTGCTTCCATCAAACAGAATGATAGTTTT
CGCTTGCACAATTACACATGCTTTAAACAAAATGGGTGTGTGTTTCCAAAGATTTGAAAT
TACTTCTGTCAAATGGGCAATAGTTTTCATGGTGGTTGTGAAACACTATGCTATCTTCAA
GTTTAAATAGTTTAACCATTCAAAAATATATGAGTTTCTAGAAACCAGGCAGTAGATAAT
TTTCAGTTTGTATAAAAAAATATTTTGATTTGTAAAATGAAAATAGTACCAACCAGTTTG
TCATGAAAAATATTTTCATAATATAAGTTAATAATTTCCTTTAACTAATATATGCCAGCA
AAAATAGTGGTAAAATTGCATACCACGGACTAAAGTTAGTGTGTATGAACTCAGATATTT
ATGACCAGAGACCTTACAAAGTGTCATTTCAATTGCCTCTAAAAAACAGATGCACAAAAG
AGTTCTGAATGATTTACATCATATTTTCCAGATCCTATAAAAAAATGGAAGGCCAATACC
ATTGAAGTTGTTTGAATTCTACCATCCAGCAGGATTCATCTCATATTTTTCACAAGTATA
TCATTCAAAAAATAATAAATTTTCACAAGTACATCAGCTAAGCAAAGCGGCAAAACAAAT
ACAGACTAAGATATCATTTAACTAAACAGTACTGTCACAATCCATCATAATATCCAAACT
GACTTGAAATATATACAAAAGCATGCCTCAAAATCTTAAACAGGAGTTTGATTCGTAGGC
ACTCTGTGCCAGTCTTTTTCTACCCTGCAGATTTTATGTGGCAGAAAACTTATATGGATC
ACTTTTGGAAAACAATCAATGTGAAAGAAAAACTCTGATCCTTTTATTTTTTCCGGGGGA
AAGAAACCTTGATCGATTAGAAGAAAAAAAAACAAGGTCCACGAAAGGCATTATCACCGT
GCATGCAGACAGAAAAGGGAAACAAAACAAAATACATAGTTGTGGCTAGCAATGGAGACA
CCCGGCAACAATACAGCAAGAACAAAGCTATCCAGCAATGTAGGGATGTAAATTTTAGTA
CAGGCAATCTGAGTGTGATTTGTCCAGACTCCAGAGAGCACTTGACACATCAACATCATG
GCTTCTTTTTTTCGGAAAAACTTCATGTCTTCAAGACCCTGGCATTTATATCCTCCATCA
GTTGGCGCCACATAGACCAGGATATTTTTTTTCTCTAGATACAATGTACCAGGACATTTT
GTTGGTATCTACCTAGAGGAATAAAGGACACACACATAATGTTCCAAGAAAAGGAAAAAA
AAAACATCGATTTCATTTTCAGCAGCTAAGGATGAGCACATATAGAAACCCAAACCCCCA
CAAGCAAATTTTCCTTTGGATACATATGACAGTTTACCGAAATTCAATATGTATTCAGCA
ATGCATTTGAGGTTCATCCCTGAATATTCTAATGCTTTCTCAGCAATTGCACAAAAATTT
GCTAGAAGACATTGAGCATTTTGCAGCTGATGGAACAAGTAGAGCTGCACAATTAAACAC
TGGCATTTTTTATTAATAGTATTTTTTTTCATTTTGAAGCATTGCACAAACCTGATCGAA
GGAGAAACTTGGGAGATATGTTCACATGTACAACACACTTTTACTTTTGCGAAATAAAGG
ACTGACTTGGATAAACATTGTTTTTATAGGGATGGATGCAAGAGCCTATCGGCTGGGCTG
CCTAAAGGAATGCGCCGTATTTGAACTCGACTTCGCAGATCTCCTAGAAATGAAATCCGA
TATTCTGCATGAATCAATGAGTTCTGGAAATCATCAAAAACTCACCATGATGGCAAAATC
ATTGACTAGGGTTCCTGCTGACATACGAGATGTTGACTGGATGACCAAGCTACAGAGCTG
TGGGTATGTTTCTGAAAGAAACACCATATGGGTTCTTGAAGGAATCCTCTATTACCTTCA
TAATGTGCATGCGATGCAAGTCCTCGAAACCATTGCGGCATGCCGCACCTCAGCCTGCAC
GGTCCTCCTTGCTGACTTTATGAACAAGAATGCTGCGTCACTGTCGCAGACGATGTACCA
TTTCTACCACGACAGCCCTGATCTCCTGCTGCCTTCTATGGGGTTCTCAAAAGCAATGTT
GTCACAAATTGGAGATCCCCAAGCACATTTTGGTCTCCTAAATCATCCACAAAATCTGTT
CGATAAGCTGAGGAGATTGCCAAGATCAGTGGAGATTAATCCAGAGGATGGCACACCATG
CCGCAGATTGTATTTGGTTGAAGCCTCTGCTTCTCCAGATGATCATACCACTTTATAAGG
CTTTACATGCACTGGATCGTTGTTTGAAATAATTATGACTCTTCCTTTTCCTCTGATTAC
TTGGAGAGTACGGTCGCACTCAAACCCAGATGTGACTTTGTATAATACACTTATTGATAT
TTTTCACTGACAAGATTTTGTGGATTATCTCGGACTGAAAGGTGCACTTTATCAAAGGAA
TTGCCCAGTTCTTCACCCATTTATAATACCTTCCAAGCAATCACAGTTCATTGAAAATCA
TCAATAAGTGTGAGCATAAATCAGTCCCATGGAACACAAAGCGAAGGAAGGGAATCACAC
TACAGAAGATGCATGGATAAACATTATACTGGCATTAAACATTCTCATAAAATGGGTAAC
ACAAGAGATTGAAAACATTAACCAAAGTAACTAAAACACAACAGATAGAAAACATTGGAG
GCAGTAATTATATTCTGAAGGAAGAAGCTCCGTAATAACTCTTGTTATTTCCTTTACCCT
ATTATTAAGGTGAGCAATTCTATTTACTATAAATAGCATATGTCAAACAAAATATACGAA
CTGTATTGAGCAAGATAAGGCACTGATGAGCAAAGACCAGAGGCAAACAAAACCGTACCA
CACATGAAAGGAAAACAAGAATGATTGATTATTCTGAAATGATTTTAAGCCTCAAGAGTT
GCTTGAGAATGAACTTAATGAAAATTAGCAAAAATATTCTATACACCTAAACAATTCTTA
ACACCCTGTTCGTATTTATCAAGGGCGGAGATAGTGCTCAGCAGGTCATCCTTCATCTTC
TTTCTGCAGTACAGTGAAGATGATAAGCGCCAGTGAATTTACTAGCTTACGAAGACTCCA
AAGCAGTTCCACAGAAAATCAAGAAGTATAATCTATATCCTAACACCTCTTGAAAAGAAA
TTCGAGGAATGGGCACATCAGCATTTGTATGAAATCCTACCTAGTATTAGTGAACAAAAG
TGTAAATTTCACTTGATTGGAACATGAAAATAATTTTCAGAGTAAAGAATAGAAATGTGA
TACTAATACCTGTGATGACAAATTGACAATATATAAGACTTATGGATACTTAAACACAGT
TTTATAAAACTGTTTGAAACCATCACCTGAACTAGGAACTTGAAAAAGGTGCAACAATCA
TTAGTAATAAAACTAGTTCTTGCTGGGTTTAACCTGGCTAAAAACCAACATGAACACCCC
TAATAAGGCCTATTGGAAACACAAAGAATTGGTTGATCATGTGATTTTTTTTAGTGAAGA
AACAAGTTGAGTGGCGAGGCCACATTACTCACCTATCATCACTGAGCTCAAAGTTACTGT
TATCCACGACAGTTCCCAGGTCAGAGAATGATCTGCACAAGGTTAACTAACGATCAATTT
TGCCACACACAAAAAAACATAAGTTTACTCGACACGATAATGTACAGAAATTTGGCAAGC
TTCTTGAAATGTTTGCGATAAACCTACTGTATTAGCTCTGCAAGGCTAGTATCAGCTTCA
ACCTTGAGAGGATCCTTATCGTCAAGCAGCGACGCCGCATTCTTCAGAATCAAGCTGAAT
GTGCAGACCTGCGGGTAATTTCATCAAACACTTGGAACACCAAATGCAAAGACAAAGCCA
ACCGTGGCCAATGCAAGCCCCCCAACCTCGACGCCGGTTCGTGACTGAAAGGCGACTATC
GAGTTCCTCTCCCGCGGCACGCAGTCCCTCCCCGCCGCGCTGAGCCGCCCCCTCACCTCC
TCGGCGTCCGCGGCAGACGCATTCTCCGAAGCTGCATTTCCAAAGTCACGACACAATTGC
GGCGAACCGTATGTAAGGACGACTGAGTAAGGCAAGCAATTGGAGCATTGGGCAATACCG
AGAAGGTCCTGGGCTTTGACGAGGGTCTCGCGGGAGGCGGCGATGGGCGCGAGGAGGAAG
CGCGCCGACTTCCTCTTCTGCTCCCGCAGCAGCTCCTTCGGCCCAGCTGCGCATGCACCA
GCGAGAAAATCAAGCAGAGGAGAGAAGACTGAGGGCGCACGCTAGCCATGACCGGCGGTT
AGAGAGTTTATGGTGGTGTCCGTACGGAAGCTGAAGGAGAAGGCGGCGGCGGCGGGTCTT
GCCGGCGAGGCGGCCAGGGCGAGTGCGGGGAGGGGGGCGCGGCGGGGGGGAGGCGTCCGG
GGGGCGTGAGGG