morexGenes - Barley RNA-seq Database

Contig contig_243868

Source Contig contig_243868

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

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Map Locations of contig_243868 (5199 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location

Predicted Genes from contig_243868

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_34430	4	1858 bp	MLOC_34430.1	Available	Available	LOC_Os03g19870.3, FRAME:-1, EVALUE:2e-163, 13103.m02382 protein ATP binding protein, putative, expressed

CDS Structure of MLOC_34430

Contig Sequence (5199 bp)

>contig_243868 5199 assembly3_WGSMorex_rbca.fasta
CCCGCCCGCCCGCCGAGGCCGCATCCGCACTCGCCCGCGCGACAGCCGCCCTCGTGATGG
CGCCCTGTCCGCCCGCGCGTCGGGGGCGTCGCCGTGCTCGCCTATGCGACCGTGCCATGC
TGCCAGCCGCTCGTCAGGGCTGCATCTGCCGCCGCGCTCGTGCCCTGCCGCCCGCCACTC
GTCGAGGCTGTATCCGCCGCGCTCGCGACCTGTAGCTCGTCGTGCTCGCGTCCGACACAC
CAGACAATCTATCGACGCGGGGTCGCCCAGGCAGAGGCTCCGGGCAGCGCGGCCAGGAGC
GGTAGGAGGGTGTCTGGGAAGGCGGTAGCAACGACATCGTCTGAGGCAGGGGCAATGAAC
ATTCTACTTTAACCTCGTTGTTCAGTGTAATTGTTAACTCCTAGTAATACAGTGAACATT
CTACTTCTAATCATCATGCATGTATGCAACCAAACACCAGGTAAAGAAGTCTTCCACGAT
GCAGAAAACGTATATGCCGGTAACCAATTCACATGCAAATGTCACATTTTGGCATGTATG
TCCTCAACCAGGCTCTACTCAGCTTGCCCCTTTTTTTCATGCAACCTCGAAAAAACGACG
ATTGAATTGTAGGATCGTCTTTGAACATTGGCCGGCCAAGGAGGATTTAGTAGTCTCGTA
GGCTTGATGACCCCCTTAGGTAATTTCATAAAAACTTTGGAGGATGATGCAACCATTGTT
GCTGTAGCTAATAAACTCTTTTTAAATATATAAAAACACGGGCACTGCTAAACTTCTTGG
AATCCAACCAATGCATTCGCTCAGCAAGTTGAGACTTTGCCTGCTCAAGTAACTAAATTA
CCGCTCTAGCCTTCTTCAAAAAAGTTTGCAGAAACAAATCAAGAAGAGAATTCATACATC
GCATTCAGGGAATACAATTCAGTCCACCTAGTCACTGAGATTGCAGCGAGTTTGACGAAG
TGCGAGTTGATTTACAGACTAACGGCCGCCATCCACCTAGTGATATCGACAGCATTTCAT
TTCCACTGTAATAACCTGGAAACAAACACAATTCCGGACCGGGTCTCCTGAACACACCAC
CCTCAAGTAAATGCCTGTTCAGTGCAATCAACCTGTCAAGACAGCTTAATACGATCAGAA
TTGAATCAACAAACCTTTACATTGACAGGGAAATTAACAGCTTGAGTTGGTGATCTACTG
ATCTTATCAACAGCAATAAAACCATCTCAATAGTATAACAGCAGTGCAATACCACCCTCA
TTCAGATTTCAACTTTACAAATTAAACTACACATGGAGTGTGAATCTGTATATTAAATAT
CCTATATCCCTTGAGAAAACAGCAGGTACCTTTACACGCACCCAAAAAAAAAATCATGGT
TATGTCACATTAATTACCAAAATCAATAATGCATGTTAAAATGAATGCCCAATGGCACCA
GCACATTAATCCTGACAGTAAGATATTCAACCAACGAGAACACCTTCAGAGCACATTATA
AACAGATAAGCGCTAGAATACCTTAAAAGCCAAAATGAGTCACTTCCTCGTCTTCACCTT
CATCTTCATCATCATCATCATCGGAAATCCTGAAATCCTCCAACGCCTCCTCTTCTTCCT
CCTCATCAGCGTCCCCCATCATTTCTGGGGCAGGGGTTTTGTCCTTCAAACCAGTGCTGA
GCACCACAGTTTGTCCTTTGGACTTCTCCATATCTCTCCTCAATCTTTCCATGTTCTCAT
TCCTACGCTCAGCTTCTAGTCTCTCCTTTTCAGCAATCCGCTTGTCAAGATCAGCCCTGA
TAAAATTGTTAGACAATAGCAACTAATAAGTTCTTTAGTTCTTTAGTATCAACAATTCAT
TCAGCAATAGTAGAACTATATCATAAGCGGCAGACCTGTAAGTCTCCATGTATTCATTAG
CGCTTGCTTCTATAGCTTCAAAAAATGCATCAACTCCAGTGCCAGATACCGCTGATACTC
CAACAGAGCGTAGGTTATTGTAGAATTCGTCCAGCACAAGAGAGAGACTCCGGGTAAATG
AAGATGAGTACGATGAGTCAGAATCCAAAGCTGTCTGAAATGCTTCAAAGTCTTGCATCC
ACTGGTCCAGCAAATAAATGAAGGCCAAGTTACCAAAATTTGAAGAAAAAAAAGTAAACC
AAGAGCAAAATTGAAGAAACATCATGGACAAAAGCCATGTTTGTGTATTGTCGATTAATA
TAAATGTTTTAATAAACCTAATTCATATGGCTCAGCATGGCAGCTCAAATGTTACATATT
GACAAAAGTATACCAAAAAGAGAACCCTACACACTGCATACAACACAATGTGAATACATG
ATAGAAGCTAAATGCAATACCAGTGTACATAATCAAGAACAGTGAAACTGAAATCGTCAC
AAGGGTGTACTCACCTCAAGAGCAAACTCGTGCTTGGCTACATCAACCTTATTAAATGTC
AGCACCAGAGGCAAACGAGTCTTGTAGAGGATACTGCACGCGTACATCATGTTGCTCATA
AAGGTCACAGGGTTTGTCGACCTGGGGGTGTCAACCACATATGCAACAACTGTTGGAAAT
GTTGATGCAAAAGCTTCAGTTATGATAGCTCCTGAAGCCGACCAAGTAAAGATTTCAATC
TGCCCTGGGGTGTCCACCAGCACATAATCCAGCTGGTCTGCTCGCTTTTCAATAACAGAT
ATAACCTGTAAGGATGAATATTGGACATATATTAGCTGAATGGCACAGGATAGAGGGGGA
AAAGATGTCTCACATACCATAAATGTAGCATACAATTTTGCAAAAAGAAGTTGTCACTAT
TCAGAGCAGAATCAAATAATATTCTACAACCTCTACATCACGCCATAAATTAAGCACAAT
TTCTGCAACAGTTCACATTGAATGATGGAGAATTACATGAATCAATTATCCACAAAAATG
AAACAATCCAGTTTGACTGGGTGGTTGTAAGTTTGTACTGCCTTGAAAGTTTTATAGCCT
AACACTCTAACAGAGTACATAAAAAGTGCACATTACCATTCCAAACATTTGAGATGCATA
TAAGATGCGTACCTCGTCAAACTTGGTTGAGAACAGGTTGAGTGAGGTAAGAATGCCACC
ATTGGGACCAAGTCCGTACTCTTTCATCACCTCCTTGTAACGCACGGTATCGCGGATATC
AATGTTGGCTCCGAATGGCAGTGTCATCACCGCAGGGTCAAGGTTGAGCACATAACCCCT
CATGTTCGCTGATGCCTGCATATGACACACCAGACGGTGCATGAAGGTGGTCTTCCCCGT
CCCTACATTGTAGGCCGAAACAGTAAGCTTCCCATCCCAAAATCCCCCAATAAAAGCTCA
GCATATCACAGGTTCGGTCGTCCATCCGTCCTCTACTAAAATGATAATTGAATAGGGCAA
ACGAAATCGACGCACCGGCCATGCCGATGACAAGGATGATCACCGGCTTTTTCTTGAAAA
TGGTCCGCCCCGGGCCGATAGATAAACTCCCGATGGAGTCCGCAAGCTCGTCGCCATTCC
CCTTCCCCTTCCCTTCCTCCTCTCCCGCTGCATCGGCCTTCCCCTTCCCCTTCGCGTCCG
CCTGCGCACGGAAAATCACATTCAAAACCCCCAAAAAGAAAGAAAAATCCCCCAGAATAA
GTTCGGCCGCGGCGGCGGAGACGGCGGCTTGCCTGGTCCTCGAGGTCCATCTGGGTGGGC
TTGTTGCTCTCGGCGGACAGTTCGGAGTCGATGTCCATGGGCGGCTCGGGTGGTGCCGGG
AGACGGCTGCAGGCTCTGCTAAACCCTAGACTTGACGGCTATGGGTGCGTCGAGTGGGGA
AAGGGAGAAGAAAGACGAAAGAGTCACAGCAGTGGTCGTCGCCCTTGTTGGGCTTTGGTC
ATAGACTTGCCGACCGAGGAGTCCACTCGGTTTGCTCTTTCTTTCTGGTTTCCGGGAAAA
TCGGCTTCTCACGCGTAACTCGTAAGAGCATCTCTAGTTAAAAACTTTATTCCCCTATAA
AGAAAAGTTAAAAACTTTATTCCCTATTAAAAATAATAATGAATCTGTATTGCATGGTTA
CGAGTTCAACGGTATCCTTATCCCATCAGAATTCAAGTCTAAAACTTGACACTCATGTTT
GCATTTTTTTTTAATTTATTTCAGGTCTTTCGATGATATGCGTTGAGTGGGAAAGGACGT
TTCGATCGCCTACGAAGGCATATGTAATGATTTCGTCAGTCTTAAGATGATGTACTATCT
CGGTCCTTTGAAGGAGTTCGTAGGATGAATGTGTATGTATGAAGGTGTTAAAATAAGGAT
TCTTGTTTTCCTTAGCTAGTGGACCCCCTAAACTTATTCCCTTCAGGAAAAAAATCCCCG
ATTTCATCCACCATTTACAAACTTTTCACAACACATTAGTTCAATATACATAAAAATTCG
AGTACATACAATTCAAATACATAGCAAAATCAACGTTCTCAAGCATAATCATGCAAATTC
AAAAACAACATACAAAAATGAGCTAATAATTTATATAAAACATGATAAAAGCACAAGAAT
CAAGTGCTATGAAGGCGCTAATGATGCTCAATTAGATCTTGAAGTTTTTTTGTGAGCTTG
ATAGTTGTCGATCCTTCGATGTGCTTGGTGCTTCGAGGAAGGCTTCGATCTCTATATGGG
TTATGTTTCGGTTCCATCATGTGCCCGTTGACGAGATACTGGAAGTCTTGTGGGTCTTCT
CTCACATCCTCAATGACCATGTTGTCTAAGATAACACATGTTGTCGCGATCTTCCACAAG
GTCATCGGCTTCTAGTACTCAACATGGGATACCAAAAACGTAGTTGAAGTACACCAAAGT
TCTCTCTAACATCATTTCTAACAAATTCTTGCATCATTGCAAAGTGAGATTCCTTATTGC
CTTCGGGGCGATGGATTGTCTTCACGAATGTGGTTGAAAGCACAATTGCTAAGGTGGTTT
TGATAATTGATCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTCAG
AAAAGTTCAAAGATGTCTTGGCCATAGGATTGTGAGGAGAAACCCCTTGATGAAGGAACG
GAATAGGATTGTCTCAAGCTTCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGAAATC
ACTTTTGAGTCCGTAGGATAGCCAATACTATTAAAAGGG