morexGenes - Barley RNA-seq Database

Contig contig_243680

Source Contig contig_243680

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_243680 (7515 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location

Predicted Genes from contig_243680

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_34374	3	2337 bp	MLOC_34374.2	Available	Available	LOC_Os08g42560.1, FRAME:+2, EVALUE:0.0, 13108.m04592 protein tRNA synthetase class II core domain containing protein, expressed
MLOC_34375	2	1763 bp	MLOC_34375.1	Available	Available	LOC_Os08g42570.1, FRAME:+2, EVALUE:0.0, 13108.m04593 protein plant protein of unknown function domain containing protein, expressed

CDS Structure of MLOC_34374

CDS Structure of MLOC_34375

Contig Sequence (7515 bp)

>contig_243680 7515 assembly3_WGSMorex_rbca.fasta
CCGCCACTCCCTCACCGCGACCCTCTCCTTCTCCTCCTCCATGGCCGGGGCAGCACCCTC
GGAGGAAGCGCTCCGCCGGGCGCTGGCGGAGAGGCAGGCGGCAGTGGACGCGCAGGCCGA
GGCCGTGCGGTCCCTCAAGGCCTCCGGCGCCAAGGCGGGGGTCGACGCGGCGGTCGAGGC
GCTGAAGGCGCTCAAGATCGAGGCTGGCGCTGCTGCGCGCAGGCTGCAGGCCTCCGTGGG
GTCCGGCGGCGGCGCCGCGCGGGAGGAGATGCGGCAGGCAGTGGTGAACACCCTTGAGCG
GAAGCTCTTCTACATACCGTCGTTCAAGATCTACCGCGGTGTCGCCGGCCTGTACGACTA
CGGGCCGCCGGGGTGTGCGGTCAAGTCCAACGTCCTGGCCTTCTGGAGGCAGGTGAGCGA
GGCCGCCAGCCCATCTCAGAATGTTGTGGTTTATTTTCCATGCTTGTATCCTAGTCAATG
TTGCGCAGGTGCTGCGATTTGATGTAGGGATACTCGCGTAGGGATGATTTACCACTTGCA
CTGTGGTTTATGTGGAATTTGCATATGGAATCTAGATATTGAACAAAGAAGACAGTTACC
CATGTTTCAGTAAAGAATCTAGATATTGAAACTTACAAGCGCACACCTCTAAAGGCAATT
AAACAAGCTCTTCTTAGTCTTACCTATCACTTGCATTTTCTGTCGCTGTAGTACTCGAAT
TACAATATGGCAATTTATTTATGACGAAGATTCCCGATGTCAATTCATTGTACTAGTTGG
CGAATATGGATTTTGTCAGTTCATTTCTATGCCTGATATTGGTGGAGATGAGGTTCGATT
TGCTAGTTTGTATTGGTACTGTTCTGTTTTTTCTGATTTATTTTCTGTGCTTGATGTTCG
TTGGGTTTAGATAGTAATATATTTTATGGTGCTGTATTTTATGACACCATCTTGTGCAAA
TTTTTCTGGAAGATGCTAATATCTCCATTCCCCTTCCAGCATTTTGTTTTGGAGGAGAAT
ATGTTGGAGGTCGACTGCCCCTGTGTGACACCTGAGGTTGTCTTGAAGGCATCAGGGCAT
GTCGAGAAGTTCACTGACCTCATGGTTAAGGATGAAAAGACAGGCACATGCTATCGTGCT
GATCACCTGTTGAAAGATTTCTGCAAGGACAAGCTTGAGAAGGATCTCACCTTGTCCCCT
GAGACGGCTGCCGAGTTTAAGCGCGTCCTTGCTGTGTTAGATGACCTCTCACCAGAGGAA
CTCGGTGCAAAGATCAAGGAATATGGCATTGTTGCCCCTGATACAAAGAACCCACTCTCT
GCTCCCTATCCATTCAATCTTATGTTCCAGACATCAATTGGCCCAACAGGTCTTAGCGTG
GGGTAAGAAGATTGCCAGTCACCACATTAATCATGTTTTTTTGGTGTTGATTGACCATGC
ATGCTCATTTTTTGTGTGAACAAACAGCTATATGAGGCCAGAGACTGCACAGGGTATTTT
TGTCAACTTCAAGGACTTGTACTACTACAATGGCCAAAAGCTTCCCTTTGCAGCAGCTCA
AATTGGTCAAGCATTCCGTAATGAGGTCTGTGTTGTGTCACACCATGCTTTAGCTTTCAT
TGGATTGTCAGTAACTGCCATTTCACTTGTTTATTCTTTGCATGTTAGCAACAGTATTAT
ACTCACTTAACTGTTTATTCTTCATGTGATTATTCAGCACATAGTGTTTGCTTCCTGAAT
TTTAATCAAATGTTCAATCTAGACTTCTTTTTTTCATGGAATTCATGATTCTGTTGACTT
AGACTACCTCTGTTTTTATTGAAAATATTTATGCAACATGATTTTATATGAATGATGGGT
GTTCTTCATGTTGCAACAATATTGCTAAACCTAGACTTCTTTATATAGAGAATGTATGAT
GCTGTTGTTTAAACTACCCTGCTTCCGTTTTTGTTAAAAATGTTTTGCGTAACGTGATTT
TTGAATGAATGTTGATACATGGCTAAACATACATTTGTCACACACTATAATGTTAATAAA
TATTCGAAGAGTGGTAAATTCGCTTGCAGTAGTTAGATATATATCCTTTTCATCTACTCA
CTACTTCCTACTTATTTGACAATCAGATCTCTCCGCGTCAAGGTCTTCTACGAGTGCGTG
AATTCACATTGGCCGAGATTGAGCACTTTGTAGATCCTGAGGATAAGTCACATCCCAAGT
TTGTTGATGTTGCTGATTTGGAGTTTTTGATGTTTCCGAGAGAGCTGCAGCTCTCAGGGG
AGTCGGCCAAGTTAACGAAGCTTGCGGAAGCAGTTTCGAAGGTTTGAGCTTGACGTCTAT
TTTATCTTTTGGCTGAGTCAGTTGTTTTTTTCTTCTTCTTCATTAGAGGCGGTTGAGTTA
GTCATTTGTCATCTTCTTCCATTTCGGATTAGAGGTGGTTTGCTTCCATTTCATGAACTT
ACTATATGTTTCTTCCTTACAGGGAACTGTTAATAATGAGACACTTGGTTACTTTATTGG
AAGGGTCTATCTTTTCCTGACACGTTTGGGAATTGATAAGAGCAAATTGCGCTTCAGACA
GCATCTACCTAATGAGATGGCTCATTATGCCGCTGACTGCTGGGATGCGGAGATTGAGTG
TTCTTATGGATGGATAGAGTGTGTGGGCATTGCAGATAGATCTGCATATGATTTAAAAGC
TCATTCTGTAAGCCTATATCACATCCATGAATAATTTGCAGTTACTGATTTTAGTCCTTT
GGACATGTTGGAATTGAAATTGAAGTAGCTCCTTTAATATATTTAGCTCCACTTTTCTTG
AGTGTGCAACTAATGTTGATCATGCTTTCCTGATTGGTGTATCATAGGAGAAAAGTGGTG
TTCCACTTGTTGCTCATGAAAAGTTTTCAAAGCCTAGAGAAGTTGAGGTGAGTTATCTAC
CGTCTTGATTCTTCAGTATTTTTGGAGTCACTAATAATGTACACCCTCTGTACAGCATCC
CCCAGCGACAAATATTATGGTACAGAGGGAGTACCATTAAATAATGTGTGCTACTTGTTA
TGTTTTATTTTTGCTCCTTAAGTATCTTACAAGTTCATCAAGAAGCATTCTTTGATGACA
TTATTATAGTCTTTGCCCTTTAACGCATAATCAATTAGGTCTAGCATTAATATATCTGAA
TTTCCTTGCTGCTACAGAAACTTGTTATCGTGCCCTCAAAGAAAGACCTAGGGCTTGCTT
TCAAGGGCAATCAGAAGATGGTGGTTGAAGCATTGGAGGTAACACATCTTGTGCTCTGTC
TGCAGTTTCTTAGGCGTTTTATCCTGTCTATCAAAGTAGAAACTTTTGTTGTTGACTTTA
TTCTTGGACAATCAGGCTATGAGTGAAAAGGAAGCAATGGACATGAAGGCTGCATTGGAA
TCTAAGGGGGAGATGAACTTCCAAGTTTGCACACTTGGAAAGGACGTGGTGATTACAAAG
AAAATGGTATCGATCAGTATGGAGAAGAAGGTGGAGCACCAGCGAGTCTTCACCCCTTCA
GTTGTTGAACCCTCATTTGGCATAGGGAGGATAATCTATTGTCTGTTTGAACATTCCTTC
TACACAAGACCTAGCAAATCAGAAGAGGAACAGCTGAATGTCTTCCGGTTCCCTCCTATC
GTGGCTCCTATCAAGTGCACTGTGTTCCCGCTGGTAAAGAATCAAGAGTTTGATGATGCC
GCCAAAGTGCTTGCTAAAGAATTAACAGCCGCAGGCATCTCACACATTATTGACACGACT
GGTACGTGATATACCATATCGAGCAGGAAAATAGTTTCTCGACCATTACCTTTATTAGCT
TCTCTTCTCTTAAATAAAGAAACTTAAAAAGCATTGGTTGTCATACCACGAAGTATATCA
TGCAATTTCATGATGGAAGATGATGTGGTTGAATAGCTGTCCAAATCATCATTGGACATA
ACACCAAGGATTACTAACTGCACATGCTCATATTATTATTTGCTTGTGAAGGCATTTCTA
TCGGGAGGAGGTATGCAAGGACGGACGAGATCGGTGTTCCTTTTGCAGTAACGGTCGATT
CTGCAACGGAGGTGACGATCCGAGAGAGGGACAGCAAGCAGCAGGTGAGGGTGGGCATCG
ACGAGGTGGCATCGGTGGTGAAGGAGCTGACAGAAGGACAAAGCACGTGGACCGATATCT
CATTCAAGTATCCCAGCCATATCGGTCCCCAAGCTGACCAGGAGTGAGTTGTCTGGCTAC
AGTTTGCACCGACCCCGTCCAGACCATCAAAACGTCATTCATCTTCCAGTTGCCCGGTTG
AAACCGTACTGCTGTTGATGCGAGCTCTGTATGAATACTTGCTGCAGACGCCTATACATT
TTGAGAATGTTTTACCATATACTCCCTCTGTCTCAAAATAACTGTCTCAACTTTGTATTA
GCTTTATTATAAATTTGTACTAAGCTTAAGACACTTATTTTGGGACGGAGTGGAATTGAC
ATCATTTTGAGTATTCCTTAAGGAGTAAGTTGTAATGAAGCTATTGAATTTTCAATCTTT
CACCTACTTGTGGCATCTTTTGTGGAGAGTCAAAGATTTTTCAAGCCACCCATGTGTTGT
TGGAAGTCTTGTTGGGTGGCTCCGGGTCTCCCACGCATTCTCCTCCAGTATCTTTGACGC
CTGTTTAACACGGCCTGTTGCACGGACATCGCCATTGCCTCCCCAGCTGCTATAGGTGAA
GATGGACCCCGCAGCCCAGCCACTGCTCGCCACGGCGGATCACGACGACGAGGTCACCGT
TATGCCCGGGAAGGGAAACAAACACGCAGAGGCGGAGGAGATGTCCACGTCCATGCAGAG
CAGGTTGGAGGAGAGCAGCACGGCCGTCGGCGAGGAGGCGGACGAAGAGATGGCATCCCG
CATGCAGCGGCGCCTGGACGCGCTTCCGGGGAAGCCGCACGAGAGCGAGCCCTTCACCAT
CTTCCGGGTGGCGGGGCCCATGCGCGACCGCAACCGCCACCTCTACGAGCCGCAGATGGT
CTCCGTCGGCCCCTTCCACCGGGGCGCCGCCCGCCTCCGCGCCATGGAGGAGCACAAGTG
GCGCTACCTCCGCGATCTCCTCGCACGGGGCGACGCGCCGCTCGCGTCCTACGCCCGCGC
CGCGCGGGACCTCGAGCCCGCGGCGCGCCGACGCTACGCTGAGCCCACCGAGGACCACCT
CCCTCAGCGGGACTTCGCCGAGATGCTCCTCCTCGACGGCTGCTTCATCGTCGAGTTCTT
CCTCAAGGGCGAGGACGGCGCCGCCGACGCGCTCATCGACGCCGCCTGGGCCATGCAGAA
CGTCTACAGCGACCTCTTCCTCCTGGAGAACCAGCTCCCCTTCTTCGTCCTCGAGCGCTT
CTACGCCATCGCCACCGGCGGACGAGGACGCGACCACTTTGTCACCAGCCTCCTCGCCAA
GTACCTCACCGTCGAGACCCCGCAGGATGCCTCCACGGCCACGCTCCCCGACGGCGAGAT
CCTCCACCTGCTGCACCTCTACTACCACTGGTTCCTCCCACCACAAGACGAGGGCGCCGC
CGTCCCTCCCGCCGGTGGCGGCGACAGCAAGATGGCCGAGGACGAGGCGTTCAACGAGTG
GCTGGCCAAGCCCATGGACGAACGCCTGCCGTGGCTGCTCCCCTCGGCGTCGGAGCTGGA
GGACGCCGGCATCACGTTCCGGGCCAAGAAGTCGCCCCGGAGCCTTGTCGACGTGACCTT
CCGCGCCCGCGACGGCGTGCTCGAGATCCCAGCCGTGGAAAGCTACACAAACCGCGCCAT
GTTCGCCAACCTCCTAGCATACGAGCAGAGCCGGGGCCGGTGGGAGCTGCAGCGGCTCAT
GAGCTACGTGGTGCTCATGGCGTCGGTGGCGGCGCACGGGCGGCGCGACGTGAAGATCCT
GCAGCGGGCCGGGGTGTTCGTCAAGGGGGACGAGGAGACGGCGGCGTTCTACGCGCACCT
TGGTGAGCTCTGCGGCGGTGCCGCCGCCGGCACGCCGGGTGTTACCAACAACTGCTACGC
CGACATGTTCCGCGAGGTGAAGGAGTACTGCGGCCGCAGCTGGAACCGTCACCGAGCCGT
GCTCGCTCACGACTACTTCAGCAACCCGTGGACGAGCATGTCCGCCGCTGCCGCCGTGCT
CCTGCTCGTTCTCACCGTCGTGCAGACCGTGTACACCGTATTGCCGTATTACCACCATTA
ATCATCGATCCATCATCCTGGATTCATGCATGCACCGGGGAAATATCGAGTGATGCCACC
ATTGAAGTTAACTCTAGCACTCCTTATAAGTGGTCAAGCCCGTATAAAATAACGGACCGC
ACGATCCATCAACCGTGCGCGTCCGCACCGTTGGATCTCCATGCAATATTTTTTTCCTCG
ATGCAACAAAAATTCGATGCGATGTAGTAATTTTTTCAACGGTTGCAACAAAAAATAAAA
TTTATAGAAAAAAAAATATTTACGTGATCATAACAAAAAACGAAGCTGATGGTGCGTGGT
AGCAAAAGTCAAACGCTGGTTGTAACAAATATTTACGTGACTTGCATGCAACTTTTTTAG
TGAACGGTTGCAAGAAAAAATGATGCCGATTGTAGCAAAAATTAACACGGTTGTACCAAA
AGTAAAAAACATCGATTGTAACGAAAAATCCGACGAACTGGAGTTGCAACCAAACATATA
TGCAGTTTTTTTACAGGATAAATGTAGCAAAAAAAATAACGCTTGGAGCAAAAATGACGC
TGGTTACAACAATTTAAACGAAAAAATGTTGCATGCCCAGTCAGCGATCGCGCACAGCCC
GCGCGCGACCGTCCGAACGGTTCGACCGATGTACCGGGTGAAAGCGTTTTCCTTAAAAGA
GACCAAACCCGTAAATTTTTACATGCACGTGAGAATCCACCCCGCCAACCTTACCGTTTT
GAAGGAAAAATTGAGGATGAGTTGTAAACCGGTCAATGCTAAGCGACAAGAGAATTCTAT
GCATACACGGGGTTTCCATGACCTTTAGTCATGGAACTCATCAGAATCAACAAGGAAATT
CCGCCGTGCGCAGACGGGATCCCGTGACCTTCGACCATAGAACTTGCCAAAATCTCACCG
AAAATGGGCATTGGCTGTTTTTTACATTCCAGTTTTTTAGTTTGCATATAAATTTTATTT
AAAATCAAAGTATCTTTATTTTGATCAAACATGTAGACTTTTTTATTGTAAAAATGTAGT
TAGAGCAACTTCAATGGGACGATCCATTTCGTTCACCGTCATCCGTTTGGGGGCGGACAA
AACTGATGGCCCAACGCGCCGACGCATTGCCAAAACACGTCCGCTTCGCGTCCGCGCCGA
TCCATTTTCGGCCGAAATTTGGGACTGAAATGCGTCGGTGCACATGCGAAGTGTATGCGC
GCGCCCTCTCGGTGTCCGCCCCAACCACCCGCGGTCAACATAATTTATGACGGCCGCCCT
CCACGGGCCCACGCG