morexGenes - Barley RNA-seq Database

Contig contig_243535

Source Contig contig_243535

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_243535 (4580 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location

Predicted Genes from contig_243535

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_34316	3	1705 bp	MLOC_34316.2	Available	Available	LOC_Os10g30850.2, FRAME:+1, EVALUE:7e-131, 13110.m02665 protein zinc finger, RING-type, putative, expressed

CDS Structure of MLOC_34316

Contig Sequence (4580 bp)

>contig_243535 4580 assembly3_WGSMorex_rbca.fasta
CCCCCCCTCCCGGGGGGGGGGGGGTTGGGGCGGTGCCTTCCACTCTCGGGCCATGGTAAC
CGAGGCGGAGAGTGCGGCGAGGTAGCACGAGCGACACAACCTGTGCAATGTGAGTCGCCG
CTCCAGGTTCGCCAAGACGGACGTGGCGCCAAAGTGGGACTGTAAGGACCTTGACCTCGT
TGTCGCGTGGATACTCGACTGTTCCTTCACCATTGCGTAGACAACCGCATGGCGCCGCCA
CCGCAGCGAGGAGTGGTTGTTTAAGGACCACTCCGCCAACGCACGCAATGGCAAAGCCGT
CGCTAGGGCTCCACCGATGTTGTCGGCAGTTACCAAGGCGACCCTCCGCACCACATAACA
GGAGGTCGAGCGGCTCCTCCGCGAGCGGCAGCCGCCACACAAGGCTGTCACGACCCTCCA
GCTCCATGCGCCATTGGAGCGACGACGACGATACGGGCGACGACGGTGTGGCAGGACAGG
AACCACGCTTAGGAATTGATCGTCCGATAAATGGTTTAGTTTTTTAATAGTTTTTAGTAA
AACAAAAATTGCCTGTCCGATAAATGGTTTAGTTTTTTAATAGTTTTTAGTCAAATATGT
ATATTATAGTATGTCCGAATTTTATATAAAATATGTCTAGTTTTCATGAATTTCGTCTCA
TTCATTCAAATTATTTTTAAAATATATGTGGACAACGTTGGATGGCAGCTTCCGACATAA
GCGGACGGATGCTGGAGAGGATTAGCGGATCGTTATTGGAAATGCAGTGTATAAGTCTCT
AAAACATGTTATAATTGTTTACAAAGGTTGTAGGAAGAAAGAGGGAGTACAAGATAACCA
TCATAGTGAAATTAATTACAAACATTTGTACCACATGGTAGATGTCATATGCAAATCGAA
ATTAAGTTTTGATACTCTAGACCGTTAGATAAGAAACTTTGGAGTACTATTAGTATAAAA
CATTTGCCCCCTCGTCCAAGAAAGAGCCATTGGCTTGCTCCCCAATCATCATTCGCCGAG
GCATGTCCCGAGATAACCACAACCTTGCGTGCTTAACCGAACCACCAACCATTCTTTGCC
CCGGGTCAAGTGCACCAACCTACCTAGATAAGGTTTTCACGGCCCCACCTTGAGCCGCAC
CCGGCATCCTAAACCGAGGGAGCCCCCTGATTTCTATCTTCCGCTCCTACGGGACCCACA
AATCCACTGCACCTCATCCGGTCCGCCACGAAAAGAAAAATATCCCATCGCCACCACTGC
CACTTCGGCCTAGGCTTCTGGGGGACCCATCTGTCCGTGACCAGTTGGTACTTGCAGACC
GGGGCACAGCGCCCGTAGGTGGACGTTGCTTCCGGATATTTCTCTGTGGGCCCTGGCCTG
GCAGGAAGTCCAACGTACCCGTGCGATTTAGCTGCTTACGGTGACCGGAAGGCCCCACCT
TTGGACGGACGCACCTGTCAGGGAGGAAGTGTAAACTTTGTGTCTTTTTGGCAGGTGGAC
GAGGGATGTCAATGCTCCACTGGATCGCGCAAAGGACTGCCACGCGGGCCCCGTGTACTG
TTCCTCGTCGCCTCCCCCTCCCCTCGAGAGTCGAGAGTGGCAACAAAAGGAGGAGTACGG
CTCGGATTAGAGTTGGACTCGGCAAAGAGCGCAGCAAAAGTGGAGGGAAAGAAAGAAATC
CGCAGCCTAAGGGGGAGGCAGCTGATTACAATCCAGTCCAATCCGATCGCCTCCCGAGCA
GACCCGAGCGGAGCGGGCGGGAGGAGGAGGAGGTTTAGCTAAGGTTCTCGCCTGCGGTCG
CATCGATGCGGAGGTTCCAGGAGTCCGTCAAGGCCCTCGAGGCCGACATCGAGCACGCCA
ATGCGCTGTGAGTGCACCGGCCCTCCCCTATTCCCCAGATTTTGCGTGCGCGTTTCGTCG
CTTGATGTGCCTCACTGATGAATTTGGTTGCGTCCTCTGCTCCTGGCGTGCAGGGCGTCC
GAGTTCCTGAGGGACTACGACGGGTCGTTCATCCAGATGCGGATGGCCTACAGCGCCGTC
GCGCATGTCCTCGTCCAGTGGACCGACTGCAGACTCGCCAGCGCGCTCGGCCTCCTCAAG
ATTATGATTTACAAGGTGCTCTCTCTTGCTAATTCGCTTTCCTCACAGCCCTTTTGCAAT
CTCAGAGTTTGCTCTGTCCGATTAGTTCTTCTCATCTTGTTGCTTACTGAATTTTGATAA
ATTTCTGGTAACGCAGATGTACGCGGAGGATCGCACCACGACCCTGCCAAGTTGGGAGAG
GGAGGCCAGCATCAGAGAATTCTACGGTAGTTAATTGTCATTACCTCTCAATCCAAGCAA
AACCATGGAAGACCCCACATGTTCATCCATAGTGTTTGCGTTTTGGCAGGTATTATATTC
CCGTCGTTGCTTCAGCTGCCAAGCGGGATCACTGAACTGGACGACAGGAAGCAAAGGAGG
CTGTGCATCGACAAGTTCAAGAGAAGGGATGGCGATTTCTCTCAGGTGGATTTGGAGAGG
GAGGTCGAGTGCGGGATTTGTCTCGAGGTGAACGCTAAAATCGTGCTACCCGACTGTACG
CACTCCTTGTGCTTGAGGTGCTTCGAAGAATGGTATGAAATTCCCTCTTCTCCCTCATTC
GATTGCCTGCAAAAGTCATTGATTCAATCATTTGCACGGAATTTTGTATTGTTGGCTTAT
ACATGTTGCAATTATTCTGTGTTACAAGTGCGCGGAAGTATGTAGTCAAGTAGTTCATCT
CCGACGCACGCTTTATTCTACTGATCTACTAATTAACAACCTGTTGCCATTACCAGAACT
AACTACAATCTGCTTCGTTTTGGTTACATTTCATGACCCTCAGAAGAAAACGGCGAACTT
TTGTAGTTGAACAATAAGTTCCATACATACAGATTATACCGAAACAGAGCTCCAAGATTT
ATTCAAATTATGAGACACTGATACATACACAAAGCTGCATCATATGTTCATCAGGTTCTG
TCAGTAAAATTGCAATGTTCAGCTCAGTGCTTTAATTGCCTCAGCAGATTTGCTTCAGTT
CCTAGATGTCATATTGTGTTTGTTTGTCATCGAGCAAAACAACTCCATCCATGCTCTTCC
TGCCTAACTTGTTAATGTTCTTCATTTTTATTTGACCACTTGATATGTTTGATGACGATA
GCAAGGTCAACTCTCCTCGCAGGAATGCTAAATCAAAGTCGTGCCCCTTTTGCCGCGCCT
GTCTCCAGAAGGTGAAGCCGAGCAGTCTGTGGGTGTACACCGATAAACGTGATGTTGTAG
ACATGGATGCGTTGACTAGGGAAAACATTAGGAGACTGTTTATGTACATAAATAAGCTAC
CACTTGTAGTCCTCCATGTTGTTGACCTTGACATTTATGAGTACCATAGCAAATAGAATG
CCTTGTTCACACTTGATTGTGTTTACCACCGAGTCGATGCCTCCATTTGAGGCTGCTGAT
TCTGACTTCTTCTAGTCGACAGAAACTAATTACTCCTACTAGTTGTATCGGTACCGAGGT
TAGAAGTTTAGAAAACTACTTGGGTAAGAAGTTAGTAGATTCCGAATAATTAAAATGGAA
AATATGAAAAATAGCAAAGCTCCCGTAGCTCAGTTGGTTAGAGCGTTGGTCTTATGAGCC
GAAGGTCGCGGGTTCGAGCCCCGCCGGGAGCAACACACACTTGTAAGCGCTTAGTACAAA
AAGATCCTGGGTTGTTTATTCTTTTTAGTAAGAATGGACGCACCGTGAGTTCCTATGAAC
AGTAAAATATGAAGCATGTTTTTGGGTGAGGAGTACAATCCAAAAAATAAAACCAGATGC
CTCTTAGTTGGTAAAACTCCTGTTTTCACAAAGATTTATACTATATACCTCTCTTCCTAA
ATATAAGTCTTTTATATGTTTCATTAGAAAATTCTATATGGATGTATATAAACACATTTT
AGAATATAGATTCACTCATTTTGTTTGTATGTAGTCCCCTTATGAAATTTATAAAAAAAC
TTATATTTAGGAAAAAAATACTAAATATGGACACGATGTTGAGCTGAGGTGAACAATAAA
ATCCAAAAATAAGTGTAAAAGATAACATGATGTTGAGCTCATGTGAACAAGAGAATATCA
AGCATAAAAACGAGCCGGCTTCCGTAAGAAGAACTCATGTTTCAAAAAAGAGTTATAGTA
TACATGATCTTGAGTTGTTTATTTGTTCTTTTTAGTAAAAATGGACGCAGTGTGAGTTCT
GATCAATAAAATTAAAATAAATAAATATGAACAATGTTTATGGGTCAGCAGTACAATCCG
AAAAGTAAAACCAGATGCCTCTTAGTTGGTAAAACTCCTGTTTTTACAATGGTTTATACT
ATACCTCCGTTTCTAAATATAGGTCTTTTATAGGTTTCATTAGAAAATTACATATGGATG
TATATAAACACATTTTAAAATATAGATTCACTTATTTTGTTTTGTATGTAGTCCCTTTAT
GAAATTTGTAAAAAGACTTATATTTATGAGTTCTGATGAACAGTAAAATCTAAATAAAAT
ATGAAGCATGTTTTTGGGTG