morexGenes - Barley RNA-seq Database

Contig contig_2422805

Source Contig contig_2422805

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

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Map Locations of contig_2422805 (334 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location	No map location	No map location

Predicted Genes from contig_2422805

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_34072	1	289 bp	MLOC_34072.1	Available	Available	LOC_Os08g41960.1, FRAME:+3, EVALUE:1e-27, 13108.m04510 protein OsMADS37 - MADS-box family gene with MIKC* type-box, expressed

CDS Structure of MLOC_34072

Contig Sequence (334 bp)

>contig_2422805 334 assembly3_WGSMorex_rbca.fasta
ATTCTCTTATAGCTTCTTATAATGTATGCGATACGAAGTTGTTACGCCGCCCCGGCCACA
CTCCCCGACCCCTACCAACCAGGAAGCGAGAAAAGAGAGAGACGAGCGACGGCCGGAGGA
GGAGGAGGAGGAGGCTAGGTTTCCCGGTGGGCGATGGCGCGGCGCGGGCGTGTGGAGCTG
CGGCGGATCGAGGACCGATCGAGCCGGCCGGTGCGCTTCTCCAAGCGCCGCTCGGGGCTC
TTCAAGAAGGCGTTCGAGCTGTCGGTCCTCTGCGACGCCGAGGTCGCGCTGCTCGTCTTC
TCCCCCGCCGGCAGGCTCTACGAGTACGCCTCCT