morexGenes - Barley RNA-seq Database

Contig contig_242028
Source Contig contig_242028
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_242028 (6728 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location
Predicted Genes from contig_242028

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_34018	1	195 bp	None	Available	Available	None
MLOC_34019	6	2611 bp	AK366131	Available	Available	None
CDS Structure of MLOC_34018

CDS Structure of MLOC_34019

Contig Sequence (6728 bp)

>contig_242028 6728 assembly3_WGSMorex_rbca.fasta
TGGCGCGCCTGCCGCCACCCGGGGTGGGGGTCCTTTTCTTCCTTTTCATTCGCAGCTGGT
CTCTTTTAGCAATCTCGTTCGACAGGGGGTCCTTTTGAACAAAAATTCCCGCCACTGGTA
CTGTCTTCCTCGTGGTCACGCACAGAAACGTCCGTGCAGCTCGTTGTTGTGCCGGCAATC
GGTGTGGTAGCGGCCGCAGTTGCTAGTTGCAGCAAAAAAACATTCCCCACCATCGCCGAA
GGTAGCTGTTGTTCTCGTCGGTTGCAGCAAAAATACGGCAGCCTCCATCGCTGGTAGCTG
TCGTTGTTACCGGTTGTAGCAATGATTTGGCCGGTTCAAGCAAAAAAAAAAAAAAAAAAG
GTCGTCGCCGCTGCCGTCGCAACTCGGCCATTGCTGATGGTAGCAAAAACAGCTGCCAGT
TGTAGCATTCGGCTGGGTCGCAACTCGGCCATTGCCGACGGTAGCAAAAACAGCTGCCAG
TTGTAGCATTCGGCTGGCTGATTGCAGCAAAAGAAAGCTGGCACTACCGTCGTGGCAACA
CGGCCGTCGCTGGTGGTAGCTGCCGCTGTCGCCGGTTGCAGACCTGCCCTGGCCGGTTCC
AGCATCTGAGTTTGCCGGTTCCTCCAGCTGAAACCGCGCGCTACCTAATCCGACCTTGGC
TCCTGCACGGTCCCGGCTCGGCCTCGGCCCTCGGGGCAGAGTTTTTGCCTCCTTCTCTTC
TCCCAAATAATCGACTTGCAGCATTTATCTTTTGACAGTGCAACCTAGTCAATTTTTCCG
GATCAAATGGTGGAAAAAATCACTTACACCGTTTCACTTTTTTGGAACCCGTTACATTTT
CTCGGATCGAATGGAAAAAATAAATTGACTTGCACCAATTCAATTTCAGGCAAACTTACC
AATAGCAAATGCTATAAAAATCTGTTCAGACAAAGAGACCCTAAACACTGAAAATGTAAG
GGAGATACCTGTCATGGTGCAACGAAAAATAAGAACGGACTCCCCAACAAATTTAAAATT
TGACCAGCCAGGATACACTAACATGCTCTATAAAATCTCAGCAAACTGTACAAGCGAAAC
CAAGTTATCCTCTTCATTGGAGGGTTTGTTGACTGTTAGATTGCACATGAACAGGACAAT
GGTCCGCGATATGAACGAATGATAAAACTAGTTCACAAACTCAGGACAAACAAAGACCAC
ACATGTTTTGTTCATAGACAGGACAAACTCAGGGCATGGGCAAATTCACACCCCAGTACA
GCGAAAGATCAGCAGGCTCGAGCCCATTCGCAACACATTCTCTACCGTGGCACCTGAACG
AAGCAAGCAGGGGGAGGAAACAACCAGAAGGACCATGAACAGGCAAAACACTCGGTCGGC
TCTGAGGCAAACCTGGTTTTAGCTCCGTAGCCTACATGCCTCTCTGCAGCCGATCGGTTC
TTCACTCTACTCCTTTAGCTCACCAACTTTCTTGTCAATCTCTTTGCCGGAGGGATTTCA
TCGGATTTCCCAAGGAAGTCTGACTTGAGATGCCCAGCCTTCAACAGCGGGACAGGGGGC
TTCACAGTCGTGCGTGTTCGAGAGGTCACAGACATATGAGCAAGCCTTTCGGTGATACTC
GAAACCTTATGAACCGTTGCCCGACCAGTTTCAGGTAAGCTGCGTGAATGCCTTAACATC
GGGTTTGCGTTCACTATAGTTCCAATGAAAAAAAAGACAAAAGGTCTTCATAATCAGATC
ACAAGCTTTGGGATGGAAATTTCACAAAGCAAGCAGCTTTATATACGAAACTTGCCTGGG
CTATTCCTTGCCGGTACTCGACTAGTAGTTTGTTTGGTGTTACTCTCAGCGGGCCGTGTA
CTTTTTTTCTCTGGTGCCTGGCGATCCAATTGAAGTTTTCTTTGCACACCTGGAAGATGG
ATAAACAGATTTACGATATAGCTGGTAATGCTAGGTAATTATGAGCACTTCATGAAAAGA
GAGAATATATATATTACCGATCTTAGATAAGCTGTTCGGTTTTATAGAAATGTTGCCAGC
AGGTTTGCTTGTGGAGAGAGCTCCAGTGGAGTATCTCCGAGCAATGTGCCCTGAAACTCC
TCTTACTCCAACTGAAACAAATGGACCGATCATAATAAAACAAGGGCTTTAAGAACAAAC
ATGCTATGGGGCGAAAGTGTGTATACTAACCACCCGGAGGAGTTTTAGGGGGACCTGCAA
CTTTTGGCCGGACAGAAGCTGGAACATATGTACAATCCTAATGGTTGGATGACAAGAAGA
AAACCGATCAATCTCCAGAGCAAAGACAAAGCAACATAGTAATCAGAAGAATAGTTTACC
TTGAAGAAGGCATGCTGGAGAACTTCCGCAGCTTTCGGTCTCTTGCAAGGATCCCACGAG
CACAAAGACTACAAAATGTAGAAGGAAAAGGAAAATCAGGAAATCCAATGATTTTGGGAA
TGTCATCTAGGACAAAAGATTTGAAGGACTTACGGATATAAGGTCGACTGCCTCACTACT
GGCTGATTTCATTACCTCCGACAGTTGATTGCCTCTGATCTGCATATACAAACCACTCAA
GATTGTTAAATTAAGCCCAGAACGAGTATCCATGTGCATTCATAGTGCACGAGATCACAT
ATAACCTAGGTTAAAGTCATGAATCAAGTTAGAATAGGATGTTGACTCATGTATTGTTTC
AAATCTAACAGAGTTGCACTGCATAAACCATGCATAACATTAAAAAGGTGTGAAAGCTAC
ACAATATGCAAAGTGAAGCAGCCCCGATACTCTCAAGAAAACAGGATCCACATGATTAAC
ATGAGGACGTAAAATGCACGACGACGAAGAAAATAACACAGTTCACAGATGCTAGTAACT
TACAGATACTCAAATAACAGGTACTCCCTCTGTAAAGAAAATATAAAGCGTTAGGTCACT
AAAGTAGTGATCTAAACACTCTTATATTTTTCTACAGAGAGAGTATTAGTTATACTGCTT
ACACAAGAACGGCTGACCCGGACAACCACAACAAAAAGTACTAGAGACAAGGAAAGATGA
ACATTGACCTGTGGGAACTGATACTTCATCGCTTCTGCAAGAGACAATCCCTGGGGCCAT
GTTTGCTCGTCTGGACTACCAATAACGTTGCAAATCTTGAGAATTTCATCCGCTTCACTA
GATGAAATAAGAAACAAGAAGTGATCAAAGACGGTAACTACGAGGGGAAAGGAACGGATA
CAATCATACAAAGTATGGAGAGAGTGCCAGTCACAATAGCAGAAGATATGGTAAACCATG
TTACCTTGTGCCAGGGAAAAGAGGATGGAGTGTCAACAGCTCGGCCATTATGGCACCCAT
TGCCCACATATCTACCAAGTTTTGAAGAAGGTCCATTTATTAGTTGGTAGCATGTGTAGG
CAAGCACAAAGTAGAAAGTAGTAGGTTCTTACCAACTGCAGAATCATAAGCAGATGACTG
GAGCAATACTTCAGGTGCTCGGTACCTAAGGCATTGAAACACATAGGGGTTAAGAAAAAG
TATATCATTGTTGTTCTCTGCGTGTGGGGTTATGGGAGCAGCGCTAACCAGCGTGTTGAC
ACATATTCTGTGTATGGTGGTGCAGATGAAACTTCTCTTGCTAGACCAAAATCTGCTAGC
TTTAGGACATCTTTGCTAACCAGCAGATTCTCTGGAATGGTATAGCAATATAGTTAACAA
AACAATAAAATATAAATGAATGAAGAAAAAAATGCATCAGTTGATCTGCAAAATTGGAAC
GCCTATAGCTGCTAGAAGGCTTTAACAAACAACTCACAATACACTAGTGTCAGACTTCCA
TTTACTTTGGCTGGTAGAGAAATACAGGGAAGGGGATAGATGAGAACATAAGAAATCCTA
CCTGGTTTGAGGTCACGATGAAAGTATCCCCTCTGGTGCATATAAGCAAGAGCCTGGAAA
ATCTGAAAGCACCAATTACGGACATCTGACTCCGCGAAAGGCTTGACTCTGTCTTTCATA
AGTTGGTAGAGATTGCACTCCTAAATGAAACAATGGACAACATTCAACAAAAGCATGATA
TGTGGTAGTTATAAAGGTTGTTATCAATCACATGCCCAAGTACCATGTATTCCATTATGA
AGTATAATATATCATTTTCCCTTATGACCTCCTTGAGCTTCACTATGTTAGGGTGATTCA
TGCGCCGCAAAGACTTCAATAAAGAAGAGATGTTATTTGAAGGAAAGTAATATGCTAGAG
AACATCAGAGAGACGATTACATGTCTGGTTAAAGTACCTTTACTTCACGTAAACTCATAC
ATTCCTCGAAAGAATAATATTTTCTCTTCATTTTCTTAACGGCCACCTACATTAGATTAA
TATAAAACATTCACGTCAACTTCATTGTTTCAGAGTTCAGGTAAAGATAACAAGAGTGAT
ATATCATAGGATACGTACAACTTCACCATTTTGTTTATTTATAGCGCGCCATACGCTCCC
GAATGTCCCATCACCAACTTCTTTAATCAACTTAAATCTGCAAAGATAAGGCGCTCTAAG
AAAAATGCAACCCAAACTGTTATCCAGAGGAGAGAAAAATACAAAAAAGTTTACCTATCC
ATTTTTCCGGTAATTTTGTTGCCTGATAGAAGCTTTTTTCCTTTGGGACAACTAGGTATC
AAGAAAAATCAACAACAAGCACAGAGAAGTGTTTCAAAGTCTAAGCGACCAATATCTTGT
CTATCAGTTCGCGCAAACAGATATATTATCCGTCAATTGAACAGTGGGCCTCCACTAGCT
TGTGCTGTCTTGGATTTGGTCCCCTTACGAAGATCCCACAGCAACCATAGTAGAGTCGCA
GAATATAGCAAGGATGAGCCTTGACCTCAGATGGTATACAGCAAAGCAAATGGCAACTAA
CTAGAGAGTGACAGATGGAGACTGAATGCAGTAAAGATGATTCACCCTGCATATAATAGC
AAAGAGAGAAAAAAAATTAGAATGTTTCAAGAGATATGGTTGATTTAGTTTTTCACATGC
TAAGACATGGGTGAAAGAACAGTCTGAACTCCCAAAAGTAGAATTTAATTATTCTACAAG
CACATCATTAGCCAGTTTACATGGTCAGCATCTACTACTGAATTTGACTACAATGAGAAG
TTACTCTGGAGATGATGTACTGATAGACAGAGAATACAAAATGGGATGATAAAAAACTTA
GCAAATAGAACAAAAGAAAGGAAAAACAAAGCAGGTATTTTACATGTAAATGTGGAGCAT
GGACTGGAGTATCGCTTCAGGATCGCCTCAGCCCGCTGTCGTTGAGCATAGAACCACTAT
GTGCAGTTCACCAGAGAGAAGAGTTGGGTGTTCCCACCGGCTAAAACACGCCAATCAGAA
GTTTCTTCGGAAACAAATAGCTTGCACTGAAGGTGATATGCCCAGAAGACCACTTTTCCC
ATGTCTTTGATGGAACACTTTAAGCTCCCAGGATCACTGCTGGTGCAATCTGATACAATG
TATTTGAATCAGAATGCTGTGGTACATTCCAAAACTTTTTGTACTCAATGACATTGCATA
GTGTATGCCAAAGGAACTAAAATCATTTCCATGAAGCATGAACATTGGTGCACCACAGAA
CCATTTGGATCATATATAATGCAGACGACTGACGACCTCAATTAGAAAACAACACAAATT
TAGCAACATTTCCAAATCTTGTTTTTGCTAGAACCAACATGAATGCGCATAACGAAACCT
AGTTCTCAGGGAAATATCAGAATTAGATATAGCACTCTTTTACCTAATCGCATAATACCA
GGCATACATTAATACCAGGGTAGAAGTGTATAACATTGGTGGAGCTGGACATTGCAAACC
ATATCGATATCAATGATGCTATTCATCAATCACAATAACGACCCGGCATCTCAATTGGCA
TGGTGATCAAGCTATACCGGTGCTTGAAACATCGAAATTCGAAAATAATGTTGCTATCTC
ATATTACTGGCTCAAACGGTTTTATGTAGCAAAATCCACACATATATGTAGAAACATCCC
CCAACTGAAAATATCGCCTGAGGTTGGGATTGATGGGGAAACGCCAACATTGCTACCGTG
TTTTTTTCTGAGTTTCTTCTCTGTCAAACTTGTGCATTGCAACCTTAATACAATTTACAT
TGCAGGCACAAAAACAATCACATAGACTGTTTTTCTCATCTATAGGAAGAAAAAAGACGC
CTTTTAACGGGAAAAAGGGGACCTTTCCGCGCAAAAAACTAAATCAGCCAACAAAAGGAA
AGAAGAAAAATCCGAACAGAAAAGCACCGCAACATAATCCTGAAAACAAGCTAACGCAGC
ACCGCGAGGCACAAACCTAGACATGGATTCGCATTGGATGGAACGCCCGCTGGCCGCTCA
GATCCGGCGCCTGGGACACAGATCCGGGGCAAACCGCTGGGAGCAAGCAAAGCGAGGAGG
GAGAGGGACGGAGCGCGACGCGAGAAAGGCGGAGGCAATGGAGCGGAATCGATGCCATAC
CTTACCAGGCGGGCAAAGGAGCATAGGGTGGTGGTGGTGGTGGTGGTGGCTCCCCACGTG
CCGCGTGTCGGCGCGGCCCACCTCAGCCCAGCCCCGAGCGGCGCGGCGCAAAGGAGGAGG
CCTGTGGGGCGCGGCGCCGGTGATTGTGTCGCCGTGGCGGCGGCGGCGGCGGCGTGGAAC
GGCGCGGG