Contig Data
morexGenes
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Map Locations of contig_241979 (6274 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_241979

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_34004 1 1970 bp MLOC_34004.1 Available Available LOC_Os03g22880.1, FRAME:-3, EVALUE:0.0, 13103.m02766 protein nucleolar protein 5A, putative, expressed





CDS Structure of MLOC_34004






Contig Sequence (6274 bp)

>contig_241979 6274 assembly3_WGSMorex_rbca.fasta
GCGCGCGGCAAACAAGTTTTTTGCGCGCGACGCGAAGCGCGGCTGTTGGAGATGCTCTAA
GGACTGATCCAAAGAAGAACCAAGGACTGATGAAATAAGCACTGATGAAAGGGTACTGAT
AATAAGACAGAACAACACTGAAGAATGAACAATGACTTAAACTGAAGAGAGAAAAACTGT
CGCATCAGGAAGCTCACACAAGATAATAAATGACTGAAATAAAAAATAAAGAAACATGAC
TGATTTTACAAACAAAGATGTACTGAGAAAGACACTTAAGTATTGCAAAGACTGAGCTTT
GATTGATAAGCAATCAAGTAGTGAACAATCAGGAAAGATGGGAAACTGAGGACACTGATT
GACAAGTAATCTAACGGAGACTGATGATTGGATACTGAAGACTGATAACTGGTACTGAGA
ATTAGCTAAGTGAGCCACACCGGCGGCGAGCTCTATGACTGTCTACGCGTGTGGTGCGTG
CAAGAAATTTCAGAGCGTTCCTGATGAACTAAGCTATGACAAACTTTCCTGGCCAAAACA
ACCACCTAACTGAGCAACACCTGCGACGAGCTCTATGACCGGCGAGTTGGCGACCATGAC
GATGAACTGAATGATAAACAGCAGGACACAGGGGAAATCACATCGAGCAACACAAGGGCA
AATTGGGCAGAGCGATTACTACCTCCCCCACCAACATGCGCTTGCTGGTAGCGAGCACGA
CAGGAGAGCCCTGCCGAGCTCCTCTCCAGCGGCCGTCCCTGTGAAGAACACATCCCGCAT
TCAAGCGCACCTTGTCAGGGACGTGCCGCTCGCCATCTCTGCCTGGCCGACCTGCCGCTA
ATCACCGGTGAGGAGCCTCCTTCCCTCCGCAGGACAAACGAACACGCAAAGATTGGTGCA
GATCCGACGGACAGAAAAACGACCTGAACCGAATTCAAAAAACAAAACAGGCCCAAAAAA
TAGTAAAACTGTATTTCTATGTGACCATTCAACTACTGCCAGTGCGAACAATGCCATCCC
ATTTATAACTAGGAAAGGTAAGCTATCCCAAACATCAAAAGCAATACAGATACGCCGCTT
CAGTCCATGCCATGCTACATTACAGAACTCATCAAGGGCTAAAAGAGGCTCACAGAGTAC
ACACTTAAACAGTTGGTACAAAAAAATCGATCCTTGATCCATCAACTTCAACACTCGCTA
TTAGGCACTAAGCTACTACTCGTCAGCCTCAGTCTTGGATTTCTTCTTCTTTTTCTTGGA
TTTCCCCTCGGTGCCAGTCTTAGGGTCAACAGACTCGGCATCGCGGTTCTTCTTTTTCTT
CTTCTTGGGGGTCTCGTCGTCGCCGTTGGCTTGCATCTCCTCGTCCTGCGGCTCCTCAAG
CTTGTGCTTCTTCTTCTTCTTCTTCTCGGTTCCCGTTTCAGCCTCGGCCGCAGCACTGTC
AACGTCCATCGCGTCACCGTTAGCCTCAGCTTTGGACTTCTTCTTTTTGCTTTTCTTCAC
GGATGCATCACCATTCTCTTTGCCTGTGAATGGATTTTTGCGGTTGACACTTATAATGGA
TTGGCAAAATATGACCAGAAAGTAAGAAACCGGCACAGTAGTGAAAGAACAGATGTATCT
TTACCGTCATCATCCTCTGTGTTCGTCAAGCCGTCAATAGCAGCTTTCATCACATCAAGG
TTCTTGCGGGGTGCAACACCCTTGTCGTAAAAGTCTAGTCTCTCCTCAACCTGTTCACGC
AGCTTCTCACCAAAAATGGAGCTGCTCATATCTGGAATTCATAACCCCATGAGAAAAGCA
ATCTGGAAAGGGAATCAGAATGTGCAATGATGATTGCAAACAACCTTAAACTTACCTGAA
TAGCAGTCAATACGTGAAGCAATGGAACATTTGTTTGCCAGGTATCGAGCCATTCTTCCC
TTGTTCTTAGTTGATGCACGCCCAATAAAAGATGAGTGGAATATGAGGCCATACTTCGGT
GTGTTTCCACGTGTTTTAAGAGCTCTGCAGTACAATTAGGAAATAGGAAATTAACAACAA
GGTTTCAGAAGCATAAAGAACAATCTTCGAATACTTAACAAAACAGTAAATAAGGTGCTC
GAATGCAAGAAGCCCAAGTATTAAGTACCTAAAGAGTGCCTTTTCAGCACCCAGTATCTG
CAGAGTAGAGGCAGGGCATTTTGCAAGATTTGAAAGACTGCCAGCATGAGAGATTAGCCG
AGCTCCAACCATTTCACCAATCAATGATGTCAGGTTTGGTGCAATATCATTCATCTTTGT
CACCAGATATTCATAGAGATTTTTACGGTACTCGGATAGATTCATGACCCTCTGAGCAAA
CTGTTGGACATTGATCAAATCAACAGGTGAAAGATCCTGGCCTAAAGATACAAAGGGGAT
TGAGTAAGCCACAACGTCACCACCCCAACTATAGAGAAGCAAAAGTAATTGTGGACATAT
TTGTTACCCATAGATGCCTTTGCTGCCTCAACAATTTCCTTTGCCTTGTCTTCATCTCCA
ATTAGATCCGCTAAAGCTGGAATGTCCTTCTCTGACAAGTCAGATTTGTTTACCACAAAC
TTGGCAAGCTTAGCATAGAGGTAGTTGTCATTCACAATCTTCACCAGCTCAGGAAAATGC
CATCCATACCACTCCCTGCATTATGGATTAACAGTAATTTAATATCTGCAGAACTGCCAC
CACCATCCATGATGAAGGTATATATAGGCATGTTGAAGGGGAGAGAAGGACATCTCACAT
TAGCACCTACTTTAGATGATAAGGGAAGTGATACTACAAATATACATGAACCGGAAGGGT
AATGAACACAAACATGGATTGAAACACCGATACACCGATACCTTCAATATTACATATACT
TCTACTAGATACACACTAAAACGAAATCAAGGTGATTCCAAGTGCCTACACAACATCTAA
ACTGAAGCACCGAACAAGTTAAACAACAGAAAGGGTGAGGAACCAACCTCACTCTCATGG
AGAAGGAATTAACATCCTTATCAAGTGTATCCAACAGAAAGATGGCTTGAATCACCATAT
TATCCACACGATTCACATTGAACTTCACCTTGGCCCTGCTATAGCTATGCCCCAGACCAA
GCTGGGCCTTCTCCAGGTCAGATGGCTGCAACAAAGAAAAAGGAATAAATAAACAAACAA
GCAAGGATGAAATTAACAATGTTTGTGCACACAAAACAGTTGCAGGCTAATGAACTGACA
CTATACAGCTGTACTATACAATCAGCTGTGTACAAAACTGCATATATGCCATCCGCTCTA
TTTACTGACAAAAGTCAAGCAAGATCAGATTTTTAAGTCGTTTCACCAGGACTAAAAATT
TCGCCGCTTCTAGGGAAACCTCTAATAAACAACCAGGTGGTGCTAACTGCCAAAACATCC
TACAGCAACAGCGCAAAAGATACATTGACCCTAGTACAGTCTGAACTCCCTATTCTTATC
AGTCAAGGGACAGTCTTAAACATATAACGAAAGTAGGCTCAGCAGTAAATCCATCACCTT
GAGTTGTTCAATGAATTGATCAAAATGCAGCCGCACCGCACGAAGCAGTTCCTGGATATA
GTCGTTGGACTCGCAAGGGATTCCGGTGGCCTCGGTGATGTGGGACCCGACCTTGGGCTC
CATGACACCGACCCTGAACTTGGCCTTCTTCCCCTCCTTCACCTTGGGCAGGTTGAGCTC
CAGGAAGTTCCTCAGCTCGTCCGTCATGATCCCTGCACCACCAAAATCAGCACCCACACA
TCATTGGGCCGTCACAGGAGACTTCAAGCGAGGGTCTGTAGGGGCGAGAGGGGGAGAGGA
CACAATACCTTCGGAGATGGCGTTGCACTGGTTGAGGGCGTCGACGGCGGACAGGAAGGG
GGTGAAGCCGGCGAGCTTGACGGCCTTGCTGAACCGCTGGAGGTCCAGCACGGTGGAGCG
GACGGCGTCCACGCTCTGCCCAATCTCGTCGATGCCGTAGGCGTGGAAGAGCGCGTACCC
GGAGGCGGACTCGAAGAGCAGATAGAGCGCCATCTCGCCGCGCGCTTCGCCGGCGGCGGC
TGAGGGGTTTGGGGGCGGAGGCGGGGGAAAGGTTAGGGTTTTAGGGAGAGGGGGAGAGGG
GAATGCGTTTCGCGGGGGGCATATTTATGGTGAGTTCTCGTTGTTGTCTGGGCCGTCCGA
TTGGATCAATGGTCGATATCGAAACCATCTTTTAAACTAATTTTAATTTTAAAAAGGCTT
GAACCAAACACATTGGCGATGATCTCTGCCGTGCATGAAAGATGTGGAAAAAAACTCGTG
ATTTTATTTTTGCAGGGTTGCATTTGTCTCAAAATATAATATTTGCTTGCATTTTGACCT
TTTATATTTTTCTGATGTGCATGCGTCAAAAAAAAACTCCAATGCGCATTTTTGACCATG
ATCTTACTACATGTCTAAAAGGACAGTATTACAAAAAAGTATGGAAATGTTATAGTAAGA
TATGCATAAAGGAATTATTCTACCTTCCATATTAGCGGTTGAAAAAATAAAACTTGGTTG
TGTGTGTAATAGTGTACCTTATTTTCAAGATCGATGGGGTATTTACGGGTTTATTCATTA
TGTTTTTTGTAGATTTGAAGTCATGACACCCCATACCAAATAAAGATGGTCACATGTAAG
GAATTTGTGCAAATCAATCTGTGACTGAATGGTTAAAGGGACAATAGTATTCCGAGTCCA
CGAGGGTTCAAGTCCTCGTGCTTGTATTATTCCTAGATTTATTTCAGGATTTTCGGAGAT
ATCACTTTCAGTGGGAGGAGACGTTCCTATCAACGACGAGACGCCTACGACGTTTGTAGA
TATGAGTGTATGCGTGTGTATATGAGCGCTTCCATTTGTACTGTGTTTAAAAATATATAA
AATATTGTATTCGCAGGAAGACAAGTTAACTTATAAGAAAATAATAATTACAAGTAAGCA
TTAAACATTAGGTATACATCATCACTTCACGGGGACTGATAACTGGCTGCAAACCGTAGT
CCAATATTGATAGATTTTCGTGATATAGCACATCCTTGAATGGAAAATTAGTCTTTTTTA
AAAGGGGGCAAAAGCTTTGCCTCGTCTCATTAATAAAGAAGAAGGGTAACAAGATTTCAA
GAGAGTCATTATTCCTCGACAAATGAAAATAAACAAAACCCTACTCTTGCGGCATGAAAG
AGCCCAAGTGTTTTGCCCCATCGAGAACCCAATTTCTCGACTCCGCTTTGATACGGTCGA
CCACGACAGTCGGCATCATAGCTTTCTTTTGGAACACTCTCGCATTTCTCTAGTTCCACA
ACTCCCATGATACAAGAATTGGAAGAGAGGACACGACCTTCCTCCTGTAGCCTTGTCCAA
CGACGGTCCTCTCCCACCACTGCTCGACCCTCGGGAGTCCAACCCGGGCGGCGACATCCA
ACTCCAAAACGTCGATCCAACACTTAATTGCATTCCAAATGCATGTGGAGAACATGCAAT
GTAAGAGGAGGTGAGCCGCCGTCTCACGCTCCCTCTTACAGAGTTGACATAAGTTACAGT
TTGGCCATCCTCTCTCTTTTGAAGTCGATCTATCGTCCAAATCGGATTCATGATGACAAA
TCACACAAAGAATTTGCACTTTAAAGGGCCCTAGTTACCCAAAATGACCCGTGTCATGTT
AGAGGCCACGGTCCCCTCGAACTGCGCCTTGTAGGTTGAGGCCGAAGAGTAAACTCCATT
GGCTATGAGGTTCCATACTATGCTATCAACCCTGTCATCATGCATCTACACTTACCGGAT
TCTCTCCCACGGTGCGCAAAATTGCTCAATATGTTGCATTGCTAGCTCATCACACATACT
CATCCATTGGATCCAATTAAGGTCCTGGAGGGCATCCCTAACCGACTTGTTCTTGTTTTG
CACAGATCGCAAAAATGGATGGTGTTATATCTTTGGGCTTCTTCCTTCCCTCCAGCCAAG
GGGTGCCAAAACTTCATCATCAGGGCATCCTCCAGAGTGATAGTTGAGGCCGCATAGGAA
AGTTCCATGTCCATCGAATCGCATTGGTTGCCCATGCCCACCCAGGCTCGTTCTGGCTCT
TTCCACTCATACTAGAGCCACCTCAATCGTAGAGCTCGAGCATGCATATTTGGGACAATT
ATATTTATGCCCCTAGTTGTGTCCCNCTCGGCTGTTTTACCCCTAATTTCCAAAAGTCAC
CGGTTCTGTCCAAGTCACTTCGCTCCTCTTATGC