Map Locations of contig_241671 (8849 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_241671

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_33952 2 998 bp MLOC_33952.1 Available Available None





CDS Structure of MLOC_33952






Contig Sequence (8849 bp)

>contig_241671 8849 assembly3_WGSMorex_rbca.fasta
GCACTTTGGTCTCTCAAAGTTGTCCCCAAGGTGCGTGTCTTCTGGTGGCGTGTCATGCGT
GGCATTCTACCTGATGAGAAGACGCTGCAATACAGACATATTCGAGATGCCAGTTTATGC
AAACTTTGCCGAGCACATGAGGAACACCTTGAACATGCGCTAATTTATTGCACGCATGCG
AGACAGTTCTGGGATGAAGCTCGCCTTGTACTGGACGTCAAGCTGCCGAGACTACACCCG
TCTTCCTGGGCTGGCGACATTTTATGTGGGTCTATGTTCACCACCAAGGAACGAGCAACG
ATTATCACGATAATGTGGTCCATCTGGAGTTCTCGCGATAGATGGACGCATGATGGCGAG
AAGTTTGATCCGGTGAGCTCCATTAAACTCACTCGAGAGGCTTTGGCCTTGCTTTACGTA
CCAAAACAGCAAGCAGCAATGCTACCAGGACATGGCTAGCGGCCACCTGAACTGGACCAA
GTGAAGATCAACACCGACGCAGCGGTGCGGTTCTTAAAGGAGAAGAGCGGAGCGGGGGGT
GTCGCCCGCTCCCAGACAACATTGATGGGCGCCTGGTGCAAGCCCCATCTAGGGGTCACT
GATCCTATGATCGTCGAGGCACTAGCCCTACGGGATGGAGTTATCTTTGCAAACCTGAGA
GGCTATGCCAATGTGATAATGGAGACCGACAGTCTAGAGATGGTGAATCTCTGGAACAAT
CGTCACAACAGTCGCTCTGTTGTGGCACCAGTTATCTACGAAATTGAGGAGCTAGCGGAT
AGTTTTCATTCTTTTGTAATTCATCATGTTAGTAGATCCGCCAACGGTCCAGCACACTTG
TGTGCCCAGCGTGCATGTAACGTGTCTGTAACCGAGAGTGGATCTCTGAGACTCCAAGTT
TTCTGGTTAGTAGCCTATTGGCTGACTGCCCAGCGAACACTTTTGTTTGAATAAAGCTCA
AAAGTTCAATGCAAAAAAATGGGCTCACTGTGTTCCTGTTCATTTAGTTGCCAGATTTTT
ATTTATTCTGACAGACTGGATATAAAGAAGCATCTATGCATATGTCTGTTCCAGTAGTTA
TGACTTATGACAAATGCTGCAAGTAAAGAGGTGCTTTGAAGTGAAGTGTAAAGATAATTT
GGAAGGGAAACTTGAGTTTCATCTTATAATTTTGAATAGAGGCCACCCAAGGGCTGGCCC
TGGAGGCCTCGACATAGCCAGGGGGCTTTGGAAAACCGGCCTGCCTCTCAAAATTAAAAT
TGTTCGTTGGCAAATGTTCCGAAACCGTCTTCCCATATCCGAGACACATGACCCTTCTCG
CTGTACTTGCGCCATATGTGGTGTCAGGACCTAGCTGAAGAAGAACAACACATTCAGCAA
ATTTAGACAAATTTAAACTTCAAGCCGTTGACGCGAACCAGCCTCAGCCATCCATCGTCT
ATCTAACGCTCTTCCTTCGCCCATACTGCTTCACTAGGTTAGTGGGACTCAAATCACGTT
CATCTGTGATCGGGACGGCTACCACGGGCGCGCGAGTCACTGTCGACTTTCAGGCACCCA
CTATAGGAGCGTCAGCCTCCATTTTTACTGCATTACATTTTTCCTGCTTGTAAGGCTACA
AAGCCATGATCCCAGCTCGTTTGTGGGCAGACTTGTATTCCCTTACCGCCGACAGTGTTC
CTAGCCGGCTTAGGTGCATCTGTTCTTGCACTAAAACATGAGACTAATTCCTCCGTAATC
GGGCTAGTGACTGTGAAATTCCATCCCCTGTTCTGAATGTTGATCTTCAGACTCCTCTGG
GTCTGACAAGTGGAATTCAGAGCTCGGTTTCTTCCTTGGCGGCGTTTTGGACCTGGAGTC
CGAGAAGGAGTTGGAGGAGCCGTAAAATCCTCCTTTTCCCCTCTCGATCACGACAGCGGT
GTTACTCTGGTGGCGGTGAAATTCGGTACGGGTCTGGACAAGTACGTGGTTGCTAAAGCA
ATTTGCTTGAGCGGTAAATCCCACCACCCTTCCGGATCCGGTGTACTTCGGCGGCGCGGC
GACGACAACGCTGCGGCCGGCGGCAGGATCAACGGCAAAAAGGTCGGGTTGCAGCATGAG
CTGTCATAAAATTCCTTCCTTTTTGCTTGTCGATCTCCGTAGTGAGGTGACTTGGTTCCC
TGCCAACTCTAAACCCTCTCTGCGCCCTTCATCCCACGATGACTGGGCCAACAGACTCTT
CAACAACCGGTCAGCTCGAGTTCCACTCTTTGCAGCTTGATGTTCAAATGGTACAAAAAA
CCGAGAGCAAGATCGATTGGAGTTTGATGAGTTTCGGGAGTATGTGCAAGAGAAATTTCA
GTCCCTACAGAAATCGTTGGGTGATTTACAAGGCTCGTTGTCAAACTTTATTTATGGATT
CCCCAAACCAGGAGAAGTCCCGCCCAATCCCCTGGATATCCTTCAAGCTAGTGGCAATGC
TCAGACACCTCAAGGTACAGTGCAAAAAATTTAGGATGCTCTGCAATCACCTTCCACACT
AGGCAATGCAACCCTGGTAGACAAGCACACTGGAAAAGAGCTTAACTTGGATGGTAGTAA
CAAGCTTCCTTATAGACATCCCCATTTTTCTGAGAACAGACAACATGCTACTGAAGCCAA
AGCACTTCCTGCAGCTCCTCCAACAGGACATGGTCAACAAGTAATTCAGTTGGAACAAGA
ACAAGGGGAGGATAAAATGCACATCTTGATACAAGATTTGGAAATCCACAAAGAGACCAG
GTCCAGGACAACCGAAGACTGGTGACACTGGTGAAACCTGCCAAGTATAACATACCTGAA
TTTGATGGCAGTGGTACTGACTCCTCGATACAAACCATTGACATGTACTTTGAGGCTGCT
AGAACACCTTTGGAACAAAAGACATAAATTGCAGTTACATATCTCAAAGGGCCTGCAATA
GAGTGGTGGAGAGGAACACGCATTATTGCCAATACACTTCCCTGGTACAGGTTTTGTAGA
CTCCTTGGTGACAGGTTTTCTAAAACATTTGTGTGTGGCAATGTCAGAACCTTTCATGCC
CTCAACCAGACTGGTTCTGCCAATGAATATGTGCTGAAATTTGAGCAATTCATGAACCTG
ATCACGAGGGATAATCCTGCTTTACCACAGGATTATTATAAAGCAAGTTTCACTGCTGGT
CTAGGTGACAACATACAACATTATGTCCAATGCCATGAACCGCAGACTTGCAGAAAGCCA
TCTGGTTGGCCAGAAGAATGGAACAAGCCCATCCTGCTAAGAAAACCCCTCTACCATATA
TAAATCAAACTGTTAAAAGGCAAATTCAGTTTGATCCTGGAAAACAACCCCCTAATAACA
CATCAACTGTTATTCAACAAGCTAAAATGAAGGGAATTTGCTACAAGCGCAAAGAACCAT
GGTTTCCTAGGCACAAGAAAGTTTGCAAACTGGCAATTCAAATGCAGATCCAGGCTATGC
AAGGTTGTTATCCAGATGATGCAAAGTTGGTTTATTACACTAAAGTCACTGATGAAACTG
ATGCTCCCCCTCCTGTGGATGGTGATGATACTCCACTACAAATCTCTATGCATGCTCTTA
TGGGCATGAGATCATCTAGAAAACTCAGTTTCACAGTTACTGACATGTTGGGCAACACTC
CATCTACTGCACTAATTGATAGTGGCAGTACTGCTACCTTCATTACACACAAGATTGCTA
AACTAGCACACTGTGTTCTCACCCCAACCAAAAGAAGACAAGTGATAGTAGCAAATGGAG
AAACACTTTGGTCAGAATTTATTTCTTTGTGGTACCCCTTTTCCCTACAAGGTACTCAGT
TCTCCACTAACTTTAGAGTCCTACAACTCCAGGGATATGATGTGATATTAGGAGAAGATT
GGATGGCTTCTTTCAGGCCAGTGGAACTGGACTTCGATGAAATGCATGTGAAAATCACAT
TGAAAAATGGGGAGAAGAAAATCTTTAAGGATGAAAGCTTACCTACTGTTGCTATCCAGG
AAATGGATACTGAAGAATCATTTCCAGCTGAACCTGTTTGTGGGGCTATGCTCATCCTAA
ATAGAATCTCTGTGCAGGAACTAGTGGACCAAATGATTCTAGAACCAGTCCAGCAGATCT
TGAGCAAATACTCCCCTGTTTTCAGCACCCCCACTACCCTCCCTCCAAAAAGAGCTATTG
ACCATGTCATCACCTTCACCCCTCATGCAAAAATCATTAATCAGAGGCCCCACAGATTAC
CACACCAACAGAAGGATGCTATGGAAAGCATCATCAAGGATATGATCCAATCAAAAGTTA
TAAGGGACAACACTAGCCCTTACTCTTCCTGTGTCCTCCTGGTCAAGAAAAAGGACATGA
CATGGAGACTGGTTAATGATTTTAGAAAAATCAATGAACAGATTGTTAAAAACAAATATC
CAATTCCTGTCATAGAAGACCTCCTCGATGAATTAAAAGGAGCAACTGTGTTTTCCAAGC
TAGGTCTGAGAAGTGGCTACCACCAGATCAGAATGCAAGAGGAGGACATTGGCAAAACTG
CTTTCAGTACCCATTGTGGCCACTATGAGTACTTAGTAATGCCCTTCGGATTGTCCAATG
CTCCAGCTACAATCGAGTTACTCATGAATACTATTCTAGCACCATATCTCAGAAAAATTG
TGTTGGTTTTCTTTGATGACATACTAATTTACAGCAGAAATCTAGAAGAACACCTTAAAC
TGGTCCTGGAAGCCTTGCATTCCAACCAGCTCTTTGCTAAACTCGATAAATGCTCTTTTG
CACAACCCCAAGTAGAATACTTGGGCCATGTCATCAGGGGAGATGGAGTGGCCACTGACC
CCACCAAAATTGAGGCAATTGTCCAATGGCCAACCCCTGAAAATGTCACCCAACTGAGAA
GCTTCTTAGGTCTTAATGGCTATTAGAGGAGATTCATCCAAAACTATGGGTTTATTTGCA
CACCACTGTTTCAATCCCTAAAGAAAGATAACTTCAAGTGGCAAAATGAACAAATGGAAG
CTTTCAACATATTGAAACACAAGATGATTCAGGCTCCCATCCTTGCCCTACCTGATTTCT
GCCAACCACTCATCTTGGAAATAGATGCTTGTGCTTATAGAATTGGGGCAATGCTTATGC
AGGATGGCAGACCACTCTCCTACTTTAGCAAGACAATTGGACCTAAAGCAGCTGCTATGT
CAACTTATGGAAAGGAGGCTATGTCCATCATTGAAGCCTTAAAACATTGGAAACACTATT
TTGCTGCATCTTCATTGATTATCAGAACTGATCAACAAAGTATGAATACATTCAAGAGCA
TAAACTCACAGAAGGAATTCAACACAAACTACTCATCAAGTTGTTGGGCTGCAATTTTAA
GATTGAGTACAAACAAGGGAAGAACAACATAGTTGTTGATGCTCTCTCTAGAGTTAAATA
CAGGCTCCGATCCTTGGTTGCAAGTCAAGCTCACCCACTTTGGCTATCCGAAGTGATCTC
TAGCTATGCACAAGACCAAAGATGCAACGATCTTCTCTCTCAGCTGGCTATATATGGAAC
TGCTGTCCCAAACTATGCACTTTAACAGGGCATCATCAGATATAAAAAGAGAATTGTCAT
TGGGTCTGATAATACTCTCAGAACCAAACTGGTCTCAGCATTACACAACTCTGAATTAGG
TGGACATTCTGGACACAGGGCTACATATCAAAGGCTCAAACTTCTTTCCCATTGGCCTGG
CATGAAACAATTCATTGTTGATTACATCAAACAATGCCCCACATGTCAAATCAACAAACG
TGAGCACTGCAAATACCCTGGGTTACTGCAACCTCTTCCTGTCCCTGATTTTCCTTAGTG
CCACATTAGCATGGATTTCATTGAAGGGCTTCCCTCCTCTCACCACAAGGACATGATTCC
TGTTGTTGTGGATAGATTCACCAGGTATGGGCATTTCATTGCAATGAAACACCCAATAAC
TCTCAGCACTGTAGCAACAACTTTTACTGAAAATATCTTCAAGTTGCATGGCCTCCCTTC
AGTTATAGTCACTGACAGAGACAAAATCTTCACAAGCTACCTTTGGTAGGAGCTTTTCAA
GAAACTCGGAATCAAGCTCCACATGAGTACTTCATACCATCCTCAATCAGATGGCCAAAC
TGAAAGAGTTAATCAATGTTTGGAGAACTACCTCAAATGCATGGCCTTCTTGCATCCTAA
GGAATGGTTGAACTGGCTTGCTCTAGCAGAATGGTGGTACAACACCAGCTACCACATCTC
TGAAGTTCACCCCTTTCCAAGCACTGTACAAGAGACCTCCAAACATGATGTCTGAGGCTG
CTCTATCCTTACTACTGAACAAGTTGCAGCACGGATTAAAGCAAATCTCCTTAAGGCACA
AGAAAGAATGAAACTTTATGCTGACAAGAAAAGATCCGAAAGAACTTTGGAAGTAGGGGG
CATGGTCTACCTAAAATTGCAGCCTTACAGACATACTACCTTGAGTGTCCACACATGTTT
AAAATTACACTCCAAGTATTATGGCCCCTTCAGAATCATTCAGAAAATAGGGCCAATGGC
TTACAAACTGCTCTTGCCTGACCATTGCAAACTGCATCCCACGTTTCATGTCAACAAGTA
AAGAAGCATCTGGGACCTCAAGCCATTCCAAACCCCAACCTACCACTACTACACGAATAT
GGTACTATTTTGCTAGAACCAAAGAAGTTGCTTGACCAAATGCTCATTCCCAGGATGCAA
GGTGACATTCAAATACCAATCGTCTGCTGGCTCATTAAATGGAGTAACCTGGAGGAACAT
GACGCCACTTTGGAAGATGCAACATTCATCCAGAAGGTCTTCCTGGCATTTCAGCCGTGA
GGACAGGTTTGATGTCGATCGGTGGGAGTTGTGAGGACCCATCCGAAGAAGAACAACACA
TTCAACAAATTCAGACAGATTTAAACTTCAAGCCGTTGGCGCGAACCAGCCTCAGCCGTC
CATCGTCGATCCAACGCTCTTCCTTCGCCCATACCGCTTCACTGGGTTAGTGGGACGCGA
ATCACGTTCATCTGCGATCGGACGACAACCTCGGGCGTGCGAGTCACTGTCAACTTTCAC
GCACCCACTACAGGAGCGTCGGCCTCCATTTTTACCGCATTACCATTTCTCCTGCTTGTA
AGGCTATAAAGCCATGATCCCAACTCGTTTGTGAGCAGACTTGTATTAGGATTTCTCCCT
TACCGCCGCCAGTGTTCCTGGCAGGCTTAGGTGCCTCTGTTCTTGCACTAAAACCTGAGA
CTAATTCCTCTGTAATCAAGCTAGTGACTGTGAAATTCCATCCCCTGTGCAGAATGTTGA
TCTTGATACTCCTCTGGGTCTGACATGCGGTAACGCCGAAGGTGCTAAGTGTTAAACACG
TTTTCTTCTGTTGTCACATAGCATGTTTTGCGTGGAGTGCCGTGCCGTGCAAGAGGCTTT
CGGTCAGACCTGGAACCCTTCCTCGGGTGCTGACCTGATCATCATTCTGAAGGCACTTAG
AGGGCCTTTCAACAGTGTTTGGCGTTGCGTTGGGGGAGAAGCTCTTCTGGATGGAGTGGT
GGACAACACAAAGGTTGTTGTCGCCGGCCCGGGTTCGAGTCTTCTCATCTTCTATAAGAA
TAAGACAGGGGGGAGTCTCCTCTCTGTTCTCATTCTTTTTGCGTTGCGTTGGGGCGGTTT
TCTAGGCTCTATGGTGTATTAGGAACAAAACTACTCCCTTGGTATCATAATATTTATAGT
TGAGGGTATTTGTATAAGTGTTTCCGAAGCGCTTCCCTTCTCACCTAGCTTACTGTATTT
TCAAATGCAGTCTTTTTTACAGCAACAAATGCTTCTGGGGAGATAGTGGGACGCTGAGCA
CATGCAAGAGGCGATGGAGTCATGGAGAAAATCAGAAACATTCAAGTCATCGCTCGGTAA
CCGTCACCGCCCGTTTGATTCTCTTTCGGTTCCTTTTGAGCTTGCAGGCCCTTGTGGATT
GGGGCTGGTTGAACCCCTGTATCATTCTATCTGCTCTAGACTTGTTCCCGGTCCGATATT
GCAATGCACTTTTTGTCTAGAAAGGAAAAATATGAGCAAATCTTCTCCTGTTCTTCTGCC
ACTTTGCCTCTTAGATATATTGGGATTCCCATTTATCCTAAGAGGTTGCGAAAAAAGAAC
CTGAAAGGAAGCGGAGCATCAACCAGACAGCAACTGACTATCAAAAATGCCCGGCATACA
ATATCTTGGTCTATATAGGATCAGCATGAACTCACACAAAAACATACACAGTTTGACCTC
GGATGCAAGCAGGTACCCTTTGAGTAGTTCTACCCCCCTCGGTTCATCCCCCTTCCATGC
GTTTCTTACTTTGAAATCGGGACTAGTTGTTTCAGATGAAGTTTGGGTCAACCTGTCACC
AGAGAATAAGGAAAATAAAAGGATTTGACAGTAGTGGCTCTTCAACAAGATTTCAAGAAG
CTACCAGCAGCAGAACTAAGGCCATTGATGGACTCGTCCATTTCGCCGGGTCCTGCCCTT
GAGTGGAGCGTCAGGCATCAGTGAGCCTTGCCAGCGATGACAATATACCACGGTCTGGAA
AGATGCCATTTACACAGATCAAAATCAGCATACCAACTTAGCATTTACAGCTTGATTTGA
TATACACACCATGTGCCAGAAAATAATAGAAAGATTCTAAGAAAAATCTGAGACAAAGTA
ACAACATAATAATAATACAATATCGACAGCTCTGCATGCATATTTAAGACTGTATGTTTT
TACCAATGTACTCCCTCTGTTCCTAAATA